View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7745_high_2 (Length: 686)
Name: NF7745_high_2
Description: NF7745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7745_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 383; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 12 - 418
Target Start/End: Original strand, 16663115 - 16663521
Alignment:
| Q |
12 |
tgagaagaaccaggggaatgaagtagatgttcttgaggattatctgaaggaacttgagagtatgttggatcaccttgtaatcaagaatgtctagttttct |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
16663115 |
tgagaagaaccaggggaatgaagtagatgttcttgaggatcatctgaaggagcttgagagtatgttggatcaccttgtaatcaagactgtctagttttct |
16663214 |
T |
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| Q |
112 |
tgcttttctatgtgctgaatggaaacgtttatgataaatgtctgatataactcatatctactagtagtattttgaaggttggacaaaatttgcagtggtt |
211 |
Q |
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| T |
16663215 |
tgcttttctatgtgctgaatggaaacgtttatgataaatgtctgatataactcatatctactagtagtattttgaaggttggacaaaatttgcagtggtt |
16663314 |
T |
|
| Q |
212 |
atgttatctaaaattgttacttcttttgacttgtaaaccaacattaccatgccaatcttgtgctaaaagactgtaaccataatttgggcactcttgttac |
311 |
Q |
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| T |
16663315 |
atgttatctaaattttttacttcttttgacttgtaaaccaacattaccatgccaatcttgtgctaaaagactgtaaccatgatttgggcactcttgttac |
16663414 |
T |
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| Q |
312 |
cttttcagttaattttgattttatttgattggcttaaaagtttatgtgattagtttacaaagccaaactcttgtggtctgctctagttaacctatttggt |
411 |
Q |
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| T |
16663415 |
cttttcagttaattttgattttatttgattggcttaaaagtttatgtgattagtttacaaagccaaactcttgtggtctgctctagttaacctatttggt |
16663514 |
T |
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| Q |
412 |
tatgttg |
418 |
Q |
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||||||| |
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| T |
16663515 |
tatgttg |
16663521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 170; E-Value: 7e-91
Query Start/End: Original strand, 481 - 658
Target Start/End: Original strand, 16663569 - 16663746
Alignment:
| Q |
481 |
atgcttattttaggaaaactatatcatttcataacttgcatggcattggaataaggagccttttaattagtacttataaactatagtcatttttcctatt |
580 |
Q |
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| T |
16663569 |
atgcttattttaggaaaactatatcatttcataacttgcatggcattggaataaggagccttttaattagtacttaaaaactatagtcatttttcctatt |
16663668 |
T |
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| Q |
581 |
aaataatgctagtttgcacatggactcctaaactttttgtatcatgttatatttgcataactatgtctagtgtgttac |
658 |
Q |
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| T |
16663669 |
aaataatgctagtttgcacatggactcctaaactttttgtatcattttatatttgcataactatgtctagtgtgttac |
16663746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 376 - 404
Target Start/End: Original strand, 16663531 - 16663559
Alignment:
| Q |
376 |
aaactcttgtggtctgctctagttaacct |
404 |
Q |
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| T |
16663531 |
aaactcttgtggtctgctctagttaacct |
16663559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 6e-42; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 181 - 364
Target Start/End: Complemental strand, 30774107 - 30773924
Alignment:
| Q |
181 |
ttttgaaggttggacaaaatttgcagtggttatgttatctaaaattgttacttcttttgacttgtaaaccaacattaccatgccaatcttgtgctaaaag |
280 |
Q |
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| T |
30774107 |
ttttgaaggttggacaaaatttgctgtgaccatgttatctaagattgtgactgttcctgacttgtaaaccaacattattatgccaaccttgtgctaaaag |
30774008 |
T |
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| Q |
281 |
actgtaaccataatttgggcactcttgttaccttttcagttaattttgattttatttgattggcttaaaagtttatgtgattag |
364 |
Q |
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| T |
30774007 |
attgtaaccatgacttgggcgctcatgttaccatttcagttaattttgattttatttgattggtatacaagtttctttgattag |
30773924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 112
Target Start/End: Original strand, 8586828 - 8586926
Alignment:
| Q |
14 |
agaagaaccaggggaatgaagtagatgttcttgaggattatctgaaggaacttgagagtatgttggatcaccttgtaatcaagaatgtctagttttctt |
112 |
Q |
| |
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|||| ||||||| |||||| |||||||||||| |||| |||||||||| |||||||| |||||||| ||||| | |||||| || ||||||||||| |
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| T |
8586828 |
agaataaccaggagaatgacatagatgttcttgtggatcatctgaaggagcttgagagcatgttggaagaccttttggtcaagagtggctagttttctt |
8586926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 27849288 - 27849336
Alignment:
| Q |
29 |
atgaagtagatgttcttgaggattatctgaaggaacttgagagtatgtt |
77 |
Q |
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| T |
27849288 |
atgaagtagatgttcttgaggatcatttggaggatcttgaaagtatgtt |
27849336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 109
Target Start/End: Complemental strand, 15594067 - 15593986
Alignment:
| Q |
28 |
aatgaagtagatgttcttgaggattatctgaaggaacttgagagtatgttggatcaccttgtaatcaagaatgtctagtttt |
109 |
Q |
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|||||||||||||||||||||| | || ||||||| || ||||| ||||| || |||||||| |||||| || |||||||| |
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| T |
15594067 |
aatgaagtagatgttcttgagggtaatttgaaggagctcgagagcatgttcgaaaaccttgtagtcaagactggctagtttt |
15593986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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