View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7745_high_26 (Length: 295)

Name: NF7745_high_26
Description: NF7745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7745_high_26
NF7745_high_26
[»] chr4 (2 HSPs)
chr4 (1-269)||(20425791-20426059)
chr4 (8-121)||(20456065-20456178)
[»] chr2 (3 HSPs)
chr2 (13-132)||(44938441-44938560)
chr2 (39-225)||(44913178-44913364)
chr2 (39-149)||(44919174-44919284)
[»] chr8 (5 HSPs)
chr8 (50-149)||(15338845-15338944)
chr8 (50-149)||(15427910-15428009)
chr8 (50-149)||(15519214-15519313)
chr8 (209-273)||(12646273-12646337)
chr8 (209-268)||(12651410-12651469)
[»] chr1 (2 HSPs)
chr1 (164-277)||(51869178-51869291)
chr1 (56-132)||(51869323-51869399)
[»] chr5 (2 HSPs)
chr5 (52-121)||(31777247-31777316)
chr5 (63-121)||(30650901-30650959)
[»] scaffold0129 (1 HSPs)
scaffold0129 (84-126)||(9770-9812)
[»] scaffold0831 (1 HSPs)
scaffold0831 (233-269)||(2126-2162)


Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 20426059 - 20425791
Alignment:
Q  1 tttaagacaaagagttccggtaataatatcacaatcaataaaatcaaagaaagggttttcctcttgaaatggatttggtaactctaatttgactcgattc 100  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  20426059 tttaaggcaaagagttccggcaataatatcacaatcaataaaatcaaagaaagggttttcctcttgaaatggatttggtaagtctaatttgactcgattc 20425960  T
Q  101 tcaaacctctcaccagaaagtaaatagaaagagtaacgaatagaataatgagtctcgataaactgatataagatgacagatgtatcattgtagtaagagt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  20425959 tcaaacctctcaccagaaagtaaatagaaagagtaacgaatagaataatgagtctcgataaactgatataagatgagagatgtatcattgtagtaagagt 20425860  T
Q  201 gagactttgatatgaagttagtgcgaaactcgttcatgaaatgagagtcttcaaataaaagagaccatg 269  Q
    ||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  20425859 gagacttagatatgcagttagtgcgaaactcattcatgaaatgagagtcttcaaataaaagagaccatg 20425791  T

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Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 8 - 121
Target Start/End: Original strand, 20456065 - 20456178
Alignment:
Q  8 caaagagttccggtaataatatcacaatcaataaaatcaaagaaagggttttcctcttgaaatggatttggtaactctaatttgactcgattctcaaacc 107  Q
    |||||||||||||||||||||| | |||||| ||||||||||||| |||||||||| ||| || |||||||||| ||||||||||||| ||||||||||     
T  20456065 caaagagttccggtaataatattagaatcaacaaaatcaaagaaatggttttcctcgtgacatagatttggtaagtctaatttgactctattctcaaact 20456164  T
Q  108 tctcaccagaaagt 121  Q
    | ||| ||||||||    
T  20456165 tatcatcagaaagt 20456178  T

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Target: chr2 (Bit Score: 64; Significance: 5e-28; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 13 - 132
Target Start/End: Original strand, 44938441 - 44938560
Alignment:
Q  13 agttccggtaataatatcacaatcaataaaatcaaagaaagggttttcctcttgaaatggatttggtaactctaatttgactcgattctcaaacctctca 112  Q
    ||||||||||||| |||||||| ||  |||||||| |||||||||||||||||||||  | || || || ||||||||||||||||||||| ||||| ||    
T  44938441 agttccggtaatagtatcacaaccataaaaatcaatgaaagggttttcctcttgaaactggttgggaaagtctaatttgactcgattctcatacctcgca 44938540  T
Q  113 ccagaaagtaaatagaaaga 132  Q
    ||||||||| ||||||||||    
T  44938541 ccagaaagtgaatagaaaga 44938560  T

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Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 39 - 225
Target Start/End: Original strand, 44913178 - 44913364
Alignment:
Q  39 taaaatcaaagaaagggttttcctcttgaaatggatttggtaactctaatttgactcgattctcaaacctctcaccagaaagtaaatagaaagagtaacg 138  Q
    |||||| |||||||| ||||||||||||||| |||||||| || |||||||| ||| |||||||| |||| ||||||||||| |||||| ||||| || |    
T  44913178 taaaattaaagaaagagttttcctcttgaaacggatttggaaagtctaattttacttgattctcatacctatcaccagaaagcaaataggaagagcaatg 44913277  T
Q  139 aatagaataatgagtctcgataaactgatataagatgacagatgtatcattgtagtaagagtgagactttgatatgaagttagtgcg 225  Q
    ||||||||||| |    ||| || || |||||||| ||||||| |||||||| | |||||| |||   ||||||| || ||||||||    
T  44913278 aatagaataatcatgggcgacaacctcatataagaggacagatatatcattgcaataagagggaggaattgatataaaattagtgcg 44913364  T

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Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 39 - 149
Target Start/End: Original strand, 44919174 - 44919284
Alignment:
Q  39 taaaatcaaagaaagggttttcctcttgaaatggatttggtaactctaatttgactcgattctcaaacctctcaccagaaagtaaatagaaagagtaacg 138  Q
    ||||||||||||||  |||||||||||||| ||||| ||| || |||||||| ||| |||||||| |||| ||||||||||| |||||| ||||| ||||    
T  44919174 taaaatcaaagaaaaagttttcctcttgaattggatctggaaagtctaattttactagattctcatacctatcaccagaaagcaaataggaagagcaacg 44919273  T
Q  139 aatagaataat 149  Q
    ||| |||||||    
T  44919274 aattgaataat 44919284  T

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Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 50 - 149
Target Start/End: Original strand, 15338845 - 15338944
Alignment:
Q  50 aaagggttttcctcttgaaatggatttggtaactctaatttgactcgattctcaaacctctcaccagaaagtaaatagaaagagtaacgaatagaataat 149  Q
    |||||||| |||||||||||||||||||| || |||||||||||| |||||||| |||||||| |||||||||||||||||||  || ||| ||||||||    
T  15338845 aaagggttgtcctcttgaaatggatttggaaagtctaatttgacttgattctcatacctctcatcagaaagtaaatagaaagaacaatgaagagaataat 15338944  T

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Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 50 - 149
Target Start/End: Original strand, 15427910 - 15428009
Alignment:
Q  50 aaagggttttcctcttgaaatggatttggtaactctaatttgactcgattctcaaacctctcaccagaaagtaaatagaaagagtaacgaatagaataat 149  Q
    |||||||| |||||||||||||||||||| || |||||||||||| |||||||| |||||||| |||||||||||||||||||  || ||| ||||||||    
T  15427910 aaagggttgtcctcttgaaatggatttggaaagtctaatttgacttgattctcatacctctcatcagaaagtaaatagaaagaacaatgaagagaataat 15428009  T

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Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 50 - 149
Target Start/End: Original strand, 15519214 - 15519313
Alignment:
Q  50 aaagggttttcctcttgaaatggatttggtaactctaatttgactcgattctcaaacctctcaccagaaagtaaatagaaagagtaacgaatagaataat 149  Q
    |||||||| |||||||||||||||||||| || |||||||||||| |||||||| |||||||| |||||||||||||||||||  || ||| ||||||||    
T  15519214 aaagggttgtcctcttgaaatggatttggaaagtctaatttgacttgattctcatacctctcatcagaaagtaaatagaaagaacaatgaagagaataat 15519313  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 209 - 273
Target Start/End: Complemental strand, 12646337 - 12646273
Alignment:
Q  209 gatatgaagttagtgcgaaactcgttcatgaaatgagagtcttcaaataaaagagaccatggttt 273  Q
    |||||||| |||||||| |||  |||||||||||||| || || |||||||||||||||||||||    
T  12646337 gatatgaaattagtgcggaacaagttcatgaaatgagggttttgaaataaaagagaccatggttt 12646273  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 209 - 268
Target Start/End: Complemental strand, 12651469 - 12651410
Alignment:
Q  209 gatatgaagttagtgcgaaactcgttcatgaaatgagagtcttcaaataaaagagaccat 268  Q
    |||||||| |||||||| |||  |||||||||||||| || || ||||||||||||||||    
T  12651469 gatatgaaattagtgcggaacaagttcatgaaatgagggttttgaaataaaagagaccat 12651410  T

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Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 164 - 277
Target Start/End: Complemental strand, 51869291 - 51869178
Alignment:
Q  164 tgatataagatgacagatgtatcattgtagtaagagtgagactttgatatgaagttagtgcgaaactcgttcatgaaatgagagtcttcaaataaaagag 263  Q
    ||||| |||| || ||||| ||||||| |||| |||||||   | |||||||| |||||||  || | |||||||||||||| |||||||||||| ||||    
T  51869291 tgatacaagaggagagatgcatcattggagtatgagtgaggaatagatatgaaattagtgcagaagttgttcatgaaatgagggtcttcaaataagagag 51869192  T
Q  264 accatggtttgtat 277  Q
    ||||||||||||||    
T  51869191 accatggtttgtat 51869178  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 56 - 132
Target Start/End: Complemental strand, 51869399 - 51869323
Alignment:
Q  56 ttttcctcttgaaatggatttggtaactctaatttgactcgattctcaaacctctcaccagaaagtaaatagaaaga 132  Q
    ||||||| ||||||||||||||| |  ||||||||||||| ||||||| ||||||||||| | ||| |||| |||||    
T  51869399 ttttcctattgaaatggatttggaacatctaatttgactccattctcatacctctcaccacatagtgaatacaaaga 51869323  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 121
Target Start/End: Complemental strand, 31777316 - 31777247
Alignment:
Q  52 agggttttcctcttgaaatggatttggtaactctaatttgactcgattctcaaacctctcaccagaaagt 121  Q
    |||||| ||| |||||||||||||||| |  |  ||||||| || |||||||||||||||||||||||||    
T  31777316 agggttctccacttgaaatggatttggcatatggaatttgagtctattctcaaacctctcaccagaaagt 31777247  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 121
Target Start/End: Complemental strand, 30650959 - 30650901
Alignment:
Q  63 cttgaaatggatttggtaactctaatttgactcgattctcaaacctctcaccagaaagt 121  Q
    |||||||||||||||| |  |  ||||||| || |||||||||||||||||||||||||    
T  30650959 cttgaaatggatttggcatatggaatttgagtctattctcaaacctctcaccagaaagt 30650901  T

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Target: scaffold0129 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 126
Target Start/End: Complemental strand, 9812 - 9770
Alignment:
Q  84 ctaatttgactcgattctcaaacctctcaccagaaagtaaata 126  Q
    |||||||||||  |||||||||||||||||||||||| |||||    
T  9812 ctaatttgactttattctcaaacctctcaccagaaagcaaata 9770  T

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Target: scaffold0831 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0831
Description:

Target: scaffold0831; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 269
Target Start/End: Original strand, 2126 - 2162
Alignment:
Q  233 ttcatgaaatgagagtcttcaaataaaagagaccatg 269  Q
    |||||||||||||  ||||||||||||||||||||||    
T  2126 ttcatgaaatgaggatcttcaaataaaagagaccatg 2162  T

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