View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7745_high_28 (Length: 290)
Name: NF7745_high_28
Description: NF7745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7745_high_28 |
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Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 24 - 274
Target Start/End: Original strand, 302560 - 302812
Alignment:
| Q |
24 |
tttcgtgttcctaccaccaggtgaaaatgctttgaacttgcaaatgcttcttgcccgtagccaagaaaatatctcaaaagcaatgtcttgagaaacttcc |
123 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
302560 |
tttcatgttcctaccaccaggtgaaaatgctttgaacttgcaaatgcttcttgccggtagccaagaaaatatctcaaaagcaatgtcttgagaaacttcc |
302659 |
T |
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| Q |
124 |
atgttgagaatcatgaaaacctacatttaagaaacatgttacatcattctcatcaatctcaaaagcaacgtcttatgcaattatgtgattttttcagaaa |
223 |
Q |
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| T |
302660 |
atgttgagaatcatgaaaacctacatttaagaaacatgttacatcattctcatcaatctcaaaagcaatgtcttatgaaattatgtgattttttcagaaa |
302759 |
T |
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| Q |
224 |
catgttgnnnnnnnngtt--tgtctcattttggataaaattcaagttcatttt |
274 |
Q |
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| T |
302760 |
catgttgaaaaaaaagtttatgtctcattttggataaaattcaagttcatttt |
302812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 274
Target Start/End: Original strand, 300340 - 300372
Alignment:
| Q |
242 |
tgtctcattttggataaaattcaagttcatttt |
274 |
Q |
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| T |
300340 |
tgtctcattttggataaagttcaagttcatttt |
300372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 54 - 142
Target Start/End: Complemental strand, 22176840 - 22176752
Alignment:
| Q |
54 |
tttgaacttgcaaatgcttcttgcccgtagccaagaaaatatctcaaaagcaatgtcttgagaaacttccatgttgagaatcatgaaaa |
142 |
Q |
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| T |
22176840 |
tttgaacttgcaaatgctttttgccggtagccaagaaaatatctcaaaagtaatgtcttgagaaacttccatgttgagaatgatgaaaa |
22176752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 54 - 142
Target Start/End: Complemental strand, 38237438 - 38237347
Alignment:
| Q |
54 |
tttgaacttgcaaatgcttcttgcccgtagccaagaaaatatctcaaaagcaa---tgtcttgagaaacttccatgttgagaatcatgaaaa |
142 |
Q |
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| T |
38237438 |
tttgagcttgcaaatgctttttgtcggtagccaagaaaatatctcaaaagcaatattgtcttgagaaacttccatgttgagaatgatgaaaa |
38237347 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 54 - 142
Target Start/End: Complemental strand, 38253907 - 38253816
Alignment:
| Q |
54 |
tttgaacttgcaaatgcttcttgcccgtagccaagaaaatatctcaaaagcaa---tgtcttgagaaacttccatgttgagaatcatgaaaa |
142 |
Q |
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| T |
38253907 |
tttgagcttgcaaatgccttttgccggtagccaagaaaatatctcaaaagcaatattttcttgagaaacttccatgttgagaatgatgaaaa |
38253816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 54 - 125
Target Start/End: Complemental strand, 38248778 - 38248707
Alignment:
| Q |
54 |
tttgaacttgcaaatgcttcttgcccgtagccaagaaaatatctcaaaagcaatgtcttgagaaacttccat |
125 |
Q |
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| T |
38248778 |
tttgagcttgcaaatgctttttccgggtagccaagaaaatatctcaacagcaatgtcttgagacacttccat |
38248707 |
T |
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