View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7745_high_39 (Length: 240)
Name: NF7745_high_39
Description: NF7745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7745_high_39 |
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| [»] chr7 (4 HSPs) |
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| [»] scaffold0103 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 24721315 - 24721092
Alignment:
| Q |
17 |
atcttgttgtgaaggtaatagaaaggttcccactttacaatcaaagtacaaatctctttcattcgcaggtattaaacttttgaaagtaatgttaattctt |
116 |
Q |
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| T |
24721315 |
atcttgttgtgaaggtaatagaaaggttcccactttacaatcaaagtacaaatctctttcattcgcaggtattaaacttttgaaagtaatgttaattctt |
24721216 |
T |
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| Q |
117 |
gatttagcatttgtggtttggtcgtattgatgtttggcatcggttgaaacattaaagagaacaaatacaagagcaaggnnnnnnncaacataggttgaca |
216 |
Q |
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| T |
24721215 |
gatttagcatttgtggtttggtcgtattgatgtttggcatcggttgaaacattaaagagaacaaatacaagagcaaggaaaaagacaacataggttgaca |
24721116 |
T |
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| Q |
217 |
ttttgatgtttcttaaagtttgat |
240 |
Q |
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| T |
24721115 |
ttttgatgtttcttaaagtttgat |
24721092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 193
Target Start/End: Complemental strand, 13279930 - 13279861
Alignment:
| Q |
124 |
catttgtggtttggtcgtattgatgtttggcatcggttgaaacattaaagagaacaaatacaagagcaag |
193 |
Q |
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| T |
13279930 |
catttgttgtttggttttctagatgattggcatcagttgaagaattaaagagaacaaatacaagagcaag |
13279861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 220
Target Start/End: Complemental strand, 13257811 - 13257750
Alignment:
| Q |
159 |
gttgaaacattaaagagaacaaatacaagagcaaggnnnnnnncaacataggttgacatttt |
220 |
Q |
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| T |
13257811 |
gttgaagcattaaagagaacaaatacaagagcaaggaaaaaggcaacatagggtgacatttt |
13257750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 220
Target Start/End: Complemental strand, 13265151 - 13265090
Alignment:
| Q |
159 |
gttgaaacattaaagagaacaaatacaagagcaaggnnnnnnncaacataggttgacatttt |
220 |
Q |
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|||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||| |
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| T |
13265151 |
gttgaagcattaaagagaacaaatacaagagcaaggaaaaaggcaacatagggtgacatttt |
13265090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0103 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 19 - 236
Target Start/End: Complemental strand, 28537 - 28320
Alignment:
| Q |
19 |
cttgttgtgaaggtaatagaaaggttcccactttacaatcaaagtacaaatctctttcattcgcaggtattaaacttttgaaagtaatgttaattcttga |
118 |
Q |
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||||||| |||||||||| ||||||||||||||||||||||||||| | || |||||||||| ||||||||||||||| |||| || |||||| | || |
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| T |
28537 |
cttgttgagaaggtaatacaaaggttcccactttacaatcaaagtagacatacctttcattcggaggtattaaacttttaaaagcaagattaattataga |
28438 |
T |
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| Q |
119 |
tttagcatttgtggtttggtcgtattgatgtttggcatcggttgaaacattaaagagaacaaatacaagagcaaggnnnnnnncaacataggttgacatt |
218 |
Q |
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| T |
28437 |
tttagtatttgtggtttgggagtattgatgcttggcatcagttgaaacattaaagagaacaaatacaagagcaagaaaaaaggcaacataggttgacatt |
28338 |
T |
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| Q |
219 |
ttgatgtttcttaaagtt |
236 |
Q |
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|||| |||| ||||||| |
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| T |
28337 |
ttgaagtttgctaaagtt |
28320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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