View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7745_high_8 (Length: 542)
Name: NF7745_high_8
Description: NF7745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7745_high_8 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 499; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 13 - 523
Target Start/End: Complemental strand, 974174 - 973664
Alignment:
| Q |
13 |
aagaatattaggtttacgtcggggtccaatatgttgcatggccatgcaccaaagtgggtaataaggaaaagtagagttgtgtttttgccaaaaatggcta |
112 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
974174 |
aagaaaattaggtttacgtcggggtccaatatgttgcatggccatgcaccaaagtgggtaataaggaaaagtagagttgtgtttttgccaaaaatggcta |
974075 |
T |
|
| Q |
113 |
ataggtttctattcacaaccacgtgtcagttttctagtggtttaagttaggcagtgtatgggcaatttctttttccaaaatttgaatgcaagttgatgcc |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
974074 |
ataggtttctattcacaaccacgtgtcagttttctagtggtttaagttaggcagtgtatgggcaatttctttttccaaaatttgaatgcaagttgatgcc |
973975 |
T |
|
| Q |
213 |
catactcgcatggtgtgtctttccatttatactcttataagataagtttgaaactatactatataaaataatatcttataatcacccacatcttacataa |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
973974 |
catactcgcatggtgtgtctttccatttatactcttataagataagtttgaaactatactatataaaataatatcttataatcacccacatcttacataa |
973875 |
T |
|
| Q |
313 |
ccttacctaatctactagaaagaaataagaaacaccaagtttaagattataagagaaaagtaactaacttataatgattaaaatcttaacttttgactaa |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
973874 |
ccttacctaatctactagaaagaaataagaaacaccaagtttaagattataagagaaaagtaactaacttataatgattaaaatcttaacttttgactaa |
973775 |
T |
|
| Q |
413 |
tcaacttttgtacaaatttcttattctaactaattaaaagtctttatatagcatgtacgaataaatctatctagattatgtaaggacaactaatcattag |
512 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
973774 |
tcaacttttgtacaaatttcttattctaactaattaaaagtctttatatagtatgtacgaataaatctatctagattatgtaaggacaactaatcattag |
973675 |
T |
|
| Q |
513 |
ctagagcttga |
523 |
Q |
| |
|
|| |||||||| |
|
|
| T |
973674 |
cttgagcttga |
973664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University