View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7745_high_9 (Length: 497)
Name: NF7745_high_9
Description: NF7745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7745_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 433; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 19 - 483
Target Start/End: Complemental strand, 45145236 - 45144771
Alignment:
| Q |
19 |
aattccataaccaccaagttctccacaagctgatttcacaagtcctaaaagagcatgttttgatgtagtataaccattaggacctgttccaccaatagaa |
118 |
Q |
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| T |
45145236 |
aattccataaccaccaagttctccacaagctgatttcacaagtcctaaaagagcatgttttgatgtagtgtaaccattaggacctgttccaccaatagaa |
45145137 |
T |
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| Q |
119 |
gctgcaacactagtagtgcatataatcgatccacggannnnnnn-gcaatcatggcgcgtgcagcatgcttaattgtagcagctgcaccaacaacatttg |
217 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45145136 |
gctgcaacactagtagtgcatataatcgatccacggattttttttgcaatcatggcgcgtgcagcatgcttaattgtagcagctgcaccaacaacatttg |
45145037 |
T |
|
| Q |
218 |
tagccatagttttctcaaattcattcagatcaagatcaagtattccagataaagagcctattattcctgcattactaaacaaaatatcgatgcaaccgtg |
317 |
Q |
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| T |
45145036 |
tagccatagttttctcaaattcattcagatcaagatcaagtattccagataaagagcctattattcctgcattactaaacaaaatatcgatgcaaccgtg |
45144937 |
T |
|
| Q |
318 |
tttttccaaagtgaaatgaattgtttcttcgacttgtttttcgtccctgacatcacaatgatggtatgttactttgtctgagcctattgaatctgcaact |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45144936 |
tttttccaaagtgaaatgaattgtttcttcgacttgtttttcgtccctgacatcacaatgatggtatgttactttgtctgagcctattgaatctgcaact |
45144837 |
T |
|
| Q |
418 |
ttatgacccaattcatcttgaatgtctactgcaataacaaatgctccattttcggcgaacaatttc |
483 |
Q |
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| T |
45144836 |
ttatgacccaattcatcttgaatgtctactgcaataacaaatgctccattttcggcgaacaatttc |
45144771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 339 - 434
Target Start/End: Complemental strand, 45141584 - 45141489
Alignment:
| Q |
339 |
tgtttcttcgacttgtttttcgtccctgacatcacaatgatggtatgttactttgtctgagcctattgaatctgcaactttatgacccaattcatc |
434 |
Q |
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| T |
45141584 |
tgtttcttcaacttgtttttcatctctcacatcacaatggtggtaactcactttgtctaacccaattgaagttgcaacttggtgacccaattcatc |
45141489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 434
Target Start/End: Complemental strand, 45152226 - 45152132
Alignment:
| Q |
340 |
gtttcttcgacttgtttttcgtccctgacatcacaatgatggtatgttactttgtctgagcctattgaatctgcaactttatgacccaattcatc |
434 |
Q |
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| T |
45152226 |
gtttcctcaacttgtttttcatcactcacatcacaatggtggtaactcactttgtctaacccaattgaagttgcaacttggtgacccaattcatc |
45152132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 20 - 488
Target Start/End: Original strand, 12700903 - 12701371
Alignment:
| Q |
20 |
attccataaccaccaagttctccacaagctgatttcacaagtcctaaaagagcatgttttgatgtagtataaccattaggacctgttccaccaatagaag |
119 |
Q |
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|||||||||||||||||||| | ||| |||| | | |||||||| ||||||||||||||||||| |||||||||| ||||||| |||||||| |||||| |
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| T |
12700903 |
attccataaccaccaagttcactacatgctgctcttacaagtcccaaaagagcatgttttgatgcagtataaccactaggaccagttccaccggtagaag |
12701002 |
T |
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| Q |
120 |
ctgcaacactagtagtgcatataatcgatccacggannnnnnng-caatcatggcgcgtgcagcatgcttaattgtagcagctgcaccaacaacatttgt |
218 |
Q |
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| || |||||| |||||||| ||||||||||| | | ||| ||| || || ||||| ||||||||| ||||||||| ||||| ||||||| | |
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| T |
12701003 |
ccgccacactaccggtgcatatgatcgatccacgaacatttttggcaaccatagcacgagcagcgtgcttaattatagcagctgtaccaataacatttat |
12701102 |
T |
|
| Q |
219 |
agccatagttttctcaaattcattcagatcaagatcaagtattccagataaagagcctattattcctgcattactaaacaaaatatcgatgcaaccgtgt |
318 |
Q |
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| | || || |||| |||||||| ||||| | || |||| || ||||||||||| |||||| ||||| || |||| | ||| | ||| ||| |
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| T |
12701103 |
atctattgtcttcttgaattcatttagatcgaattcgagtacgcccaataaagagccttgtattccggcattgctgaacatgacatcaagttgaccatgt |
12701202 |
T |
|
| Q |
319 |
ttttccaaagtgaaatgaattgtttcttcgacttgtttttcgtccctgacatcacaatgatggtatgttactttgtctgagcctattgaatctgcaactt |
418 |
Q |
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|||||||||||||||| || |||||||| || |||||||| | | | | || |||||||||||||| ||||| | ||| ||||||||| | |||||| |
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| T |
12701203 |
ttttccaaagtgaaattaacagtttcttcaacctgtttttcatgc-taatgtcgcaatgatggtatgtcactttatttgaacctattgaagatacaactt |
12701301 |
T |
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| Q |
419 |
tatgacccaattcatcttgaatgtctactgcaataacaaatgctccattttcggcgaacaatttctctgc |
488 |
Q |
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|||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||| |||| |
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| T |
12701302 |
gatgacctaattcatcttgaatgtctactgcaacaacaaatgctccattttcgacgaacaacttcactgc |
12701371 |
T |
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