View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7745_low_1 (Length: 848)
Name: NF7745_low_1
Description: NF7745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7745_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 740; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 740; E-Value: 0
Query Start/End: Original strand, 19 - 838
Target Start/End: Complemental strand, 18255770 - 18254951
Alignment:
| Q |
19 |
taaattccttttttatatccaattgttctaatagtttaggttgtttatgcaaaagttgtttaggatgaagcataaatctgctgaaagaatctatggacat |
118 |
Q |
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| T |
18255770 |
taaattccttttttagatgcaattgttctaatagtttaggttgtttatgcaaaagttgtttaggatgaagcataaatctgctgaaagaatctatggacat |
18255671 |
T |
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| Q |
119 |
attctactatgtgctgaaagactgaaatttcgtatggatcatctatggtcaatgtatgacgtattggccactaaaaccgtcagatctaaagagagaaatt |
218 |
Q |
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| T |
18255670 |
attctactatgtgctgaaagactgaaatttcgtatggatcatctatggtcaatgtatgacgcattggctactaaaaccgtcagatctaaagagagaaatt |
18255571 |
T |
|
| Q |
219 |
tctgatctgacgattctataagccgctgcatcatttagtgactttaacgaagattgacaacactcctaggaagtaagctcaagtttcacctcatcttcag |
318 |
Q |
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| T |
18255570 |
tctgatctgacgattctataagccgctgcatcatttagtgactttaacgaagattgacgacactcctaggaagtaagctcaagtttcacctcatcttcag |
18255471 |
T |
|
| Q |
319 |
agatgagacggtaacttgatcagtgttgtgtaactttttatttcttttgtcaaaccggcacggattaaatcaccatcttatcgtaagaacattaaacacc |
418 |
Q |
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| T |
18255470 |
agatgagacggtaacttgatcagtgttgtgtaactttttatttcttttgtcaaaccggcacggattaaatcaccatcttatcgtaagaacattaaacacc |
18255371 |
T |
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| Q |
419 |
gcgagtttgtacttttgaaagatgggatctaaacaattttgaatgaaaataacttgtgtaggctagaagttctaccttctgtattagatgcagcagttct |
518 |
Q |
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| T |
18255370 |
gcgagtttgtacttttgaaagacggggtctaaacaattttgaatgaaaataactcgtgtaggctagaagttctaccttctgtattagttgcagcagttct |
18255271 |
T |
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| Q |
519 |
aatgttctctttactcctgagaacaacagccatgtgactttgacccttcttgaattgattcagtatatcatatagtggccaattttcacctactctgtta |
618 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18255270 |
aatgttctctttactcttgagaacaacagccatgtgactttgacccttcttgaattgattcagtatatcatatagtggccaattttcacctactctgtta |
18255171 |
T |
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| Q |
619 |
accaaaaagaaaatcataaaccaaattcagataattctcttcttactaatattatattaatcaattacaactagcagaatgtccgagcattatgttagac |
718 |
Q |
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| T |
18255170 |
accaaaaagaaaatcataaaccaaatttagataattctcttcttactaatattatattaatcaattacgattagcagaatgtccgagcattatgttagac |
18255071 |
T |
|
| Q |
719 |
tcaagttgtcgattagttttagttaacgacaggttgttctagagaatccaaattcgaacttctgagaatcggagggttatgnnnnnnnngattattttct |
818 |
Q |
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| T |
18255070 |
tcaagttgtcgattagttttagttaacgacaggttgttctggagaatccaaattcgaacttctgagaatcggagggttatgaaaaaaaagattattttct |
18254971 |
T |
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| Q |
819 |
tatcaaccttcatattcttc |
838 |
Q |
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| T |
18254970 |
tatcaaccttcatattcttc |
18254951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 541 - 606
Target Start/End: Original strand, 18052582 - 18052647
Alignment:
| Q |
541 |
acaacagccatgtgactttgacccttcttgaattgattcagtatatcatatagtggccaattttca |
606 |
Q |
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| T |
18052582 |
acaacagccatatggctatgacccttcttgaattgattcaatatttcatatagtggccaactttca |
18052647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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