View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7745_low_13 (Length: 448)
Name: NF7745_low_13
Description: NF7745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7745_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 19 - 309
Target Start/End: Original strand, 42161476 - 42161775
Alignment:
| Q |
19 |
ccaacaactcaaaccagttgttcaacaacttcctcaaccaacacc---------accgtcatcaccaccgtctcaacaaccacaacctccacgtaaggtt |
109 |
Q |
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| T |
42161476 |
ccaacaactcaaaccagttgttcaacaacttcctcaaccaacaccaccatcaccaccgtcatcaccaccgtcgcaacaaccacaacctccacgtaaggtt |
42161575 |
T |
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| Q |
110 |
gcttcctttcacacacttgaagagttagatgcaaagtcaagcccaaagaagaaaaacgagtcccagtcaccaaaaccaccacaaccacaagctgaaccaa |
209 |
Q |
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| T |
42161576 |
gcttcctttcacacacttgaagagttagatgcaaagtcaagcccaaagaagaaaaacgagtcccagtcaccaaaaccaccacaaccacaagctcaaccaa |
42161675 |
T |
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| Q |
210 |
cgaagaacaacgttgttgatgttggttcagtgagaacattaaaaccatctttgtcatcatcaaaactgaaggataacatattcataaaacgagacatatt |
309 |
Q |
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| T |
42161676 |
cgaagaacaaagttgttgatgttggttcagtgagaacattaaaaccatctttgtcatcatcaaaactgaaggataacatattcataaaacgagacatatt |
42161775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 370 - 432
Target Start/End: Original strand, 42161836 - 42161898
Alignment:
| Q |
370 |
cccactaagcagatatccagaaaaatgtccaccaaatggaaacgacgccgtagtaatatatac |
432 |
Q |
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| T |
42161836 |
cccactaagcagatatccagaaaaatgtccaccaaatggaaacgacgccgtagtaatatatac |
42161898 |
T |
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