View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7745_low_15 (Length: 411)
Name: NF7745_low_15
Description: NF7745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7745_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 18 - 394
Target Start/End: Complemental strand, 2862559 - 2862183
Alignment:
| Q |
18 |
gaacccaaatccatcaccacaatcaagctccctcaatttcaacaaaaagtaaagtacaatcccaacaaaaaaccctaaagcagcactagacccagtcaaa |
117 |
Q |
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| T |
2862559 |
gaacccaaatccatcaccacaatcaagctccctcaatttcaacaaaaagtaaagtacaatcccaacaaaaaaccctaaagcagcactagacccagtcaaa |
2862460 |
T |
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| Q |
118 |
gaaacagcagcacaaacaaacataataaaagactcttgtttactattcatatctttagaagccatagccaactcaatcccagcaaacaaaagcaacaccc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2862459 |
gaaacagcagcacaaacaaacataataaaagactcttgtttactattcatatctttagaagccatagccaattcaatcccagcaaacaaaagcaacaccc |
2862360 |
T |
|
| Q |
218 |
ctaatatgccaataggaaactgacccaaaattcttccaaaagagttcccaaaaaccaaagcaatcaacaatttaccaaccccaagaaaaacaacagaagc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2862359 |
ctaatatgccaataggaaactgacccaaaattcttccaaaagagttcccaaaaaccaaagcaatcaacaatttaccaaccccaagaaaaacaacagaagc |
2862260 |
T |
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| Q |
318 |
accactcctacctccaaacctatactgaccagccaatccaccagctccatggcaacaaggcatagcaccaaaccaac |
394 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2862259 |
accactcctacctccaaacctatactgaccagccaatccaccagctccatggcaacaaggcatagcaccaaaccaac |
2862183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 96 - 239
Target Start/End: Original strand, 49992957 - 49993100
Alignment:
| Q |
96 |
agcagcactagacccagtcaaagaaacagcagcacaaacaaacataataaaagactcttgtttactattcatatctttagaagccatagccaactcaatc |
195 |
Q |
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||||||||||||||| | ||||||||||| ||||| || ||||| |||||| || | ||| |||||||||| || |||||||||| || |||||| |
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| T |
49992957 |
agcagcactagaccccacaagagaaacagcagtacaaagaagcataacaaaagaatcctctttgttattcatatccctacaagccatagctaattcaatc |
49993056 |
T |
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| Q |
196 |
ccagcaaacaaaagcaacacccctaatatgccaataggaaactg |
239 |
Q |
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| T |
49993057 |
ccagcaaacaacaacaacacccctaaaattcccacaggaaactg |
49993100 |
T |
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