View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7745_low_17 (Length: 395)

Name: NF7745_low_17
Description: NF7745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7745_low_17
NF7745_low_17
[»] chr1 (3 HSPs)
chr1 (43-377)||(33092231-33092559)
chr1 (43-190)||(1182141-1182284)
chr1 (1-45)||(33092602-33092646)


Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 43 - 377
Target Start/End: Complemental strand, 33092559 - 33092231
Alignment:
Q  43 tctcagttgtgtgtcgaaggtctacttgatgaatgcatgtcttaagactatatatggagcaagaaattgtctcgcttgtcactaagcaaaagaagaatca 142  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||    |||||| ||||| |||||||||||||||||||||||||||||||    
T  33092559 tctcagttgtgtgtcgaatgtctacttgatgaatgcatgtcttaagactata----gagcaaaaaattctctcgcttgtcactaagcaaaagaagaatca 33092464  T
Q  143 agtgaaatttgtgagagtcctaacaacatatagtgtagaaggtaaatttgtttgaacatctgtttagatttgttattggtctcatggatttttgtttgct 242  Q
    |||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33092463 agtgaaatttgtgagaatcctacaaacatatagtgtagaaggtaaatttgtttgaacatctgtttagatttgttattggtctcatggatttttgtttgct 33092364  T
Q  243 agtttagttaactatgtatgtgtgttggtttagttattaagagataattattttgatttttgtccccttcaaaaaatatttgcctttgattatagataaa 342  Q
    |||||||||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33092363 agtttagttaactatgtat--gtgttggtttacttattaagagataattattttgatttttgtccccttcaaaaaatatttgcctttgattatagataaa 33092266  T
Q  343 atgaatctgaaaattgacactgcaatattgaatct 377  Q
    |||||||||||||||||||||||||||||||||||    
T  33092265 atgaatctgaaaattgacactgcaatattgaatct 33092231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 43 - 190
Target Start/End: Complemental strand, 1182284 - 1182141
Alignment:
Q  43 tctcagttgtgtgtcgaaggtctacttgatgaatgcatgtcttaagactatatatggagcaagaaattgtctcgcttgtcactaagcaaaagaagaatca 142  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||| |||||||||| ||| ||||||||||||||| ||||||    
T  1182284 tctcagttgtgtgtcgaaggtctacttgatgaatgcatgtcttaagactat----ggagcaaaaaattgtctcacttttcactaagcaaaagacgaatca 1182189  T
Q  143 agtgaaatttgtgagagtcctaacaacatatagtgtagaaggtaaatt 190  Q
    ||||||||||||||| ||| | |||  | |||||||||||| ||||||    
T  1182188 agtgaaatttgtgagtgtcttgacagaaaatagtgtagaagataaatt 1182141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 33092646 - 33092602
Alignment:
Q  1 tagattttgctttgagatccaataatatgatgatgtgaacattct 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  33092646 tagattttgctttgagatccaataatatgatgatgtgaacattct 33092602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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