View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7745_low_20 (Length: 384)
Name: NF7745_low_20
Description: NF7745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7745_low_20 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 128; Significance: 4e-66; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 37146394 - 37146612
Alignment:
| Q |
1 |
aacatttgggaattaacaaatcttccagaaggacagaaatctattggagtaaaacaagtgtatatgacaatgctcaatgcagatggtaaggtggataaat |
100 |
Q |
| |
|
|||| |||||||||||||||||||||| | |||||||||||||||||| ||||||| ||||||| | ||| |||||||||||||||||| |||| ||||| |
|
|
| T |
37146394 |
aacacttgggaattaacaaatcttccaaagggacagaaatctattggattaaaacaggtgtataagccaaagctcaatgcagatggtaacgtgggtaaat |
37146493 |
T |
|
| Q |
101 |
acaaggcttgaccggtagtttaaggctataagcaagaatatggggttgattatgaagaggtatttgctccagtgtatacacatgacacaattagattggt |
200 |
Q |
| |
|
|||||||| | | |||||| |||||||||||||||||||||||||||||||| |||||||||||||| | ||| ||| ||||||||||| ||||||||| |
|
|
| T |
37146494 |
acaaggctcggctagtagttaaaggctataagcaagaatatggggttgattataaagaggtatttgctacggtggatagacatgacacaa-tagattggt |
37146592 |
T |
|
| Q |
201 |
tattttagtcgcaactcaat |
220 |
Q |
| |
|
||||| |||||||||||||| |
|
|
| T |
37146593 |
tatttcagtcgcaactcaat |
37146612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 227 - 366
Target Start/End: Original strand, 37147113 - 37147244
Alignment:
| Q |
227 |
atgtaaattgtgagatggaatacaattaaaatgaactttggaggagtcttatgcacccttatacaaatggcattcctcaaaagcctattcatactcatgt |
326 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||||| ||||||||| |||||||| |||||| ||||||||||||||||| || | |
|
|
| T |
37147113 |
atgtaaattatgaaatggaatacaattaaaatgaactttgtaggagtcttttgcaccct----caaatgtaattcctcaaaagcctatatat----gtcg |
37147204 |
T |
|
| Q |
327 |
tgctctaccatagcattagatatatatgggtaggagttag |
366 |
Q |
| |
|
| ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
37147205 |
tcctctaccatagcattagatatatattggtaggagttag |
37147244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 101; Significance: 6e-50; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 7 - 219
Target Start/End: Original strand, 144302 - 144514
Alignment:
| Q |
7 |
tgggaattaacaaatcttccagaaggacagaaatctattggagtaaaacaagtgtatatgacaatgctcaatgcagatggtaaggtggataaatacaagg |
106 |
Q |
| |
|
||||||||||||||||| ||| | || |||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
144302 |
tgggaattaacaaatctaccaaaggggcagaaatctattggagtaaagtgggtgtataagacaaagctcaatgcagatggtaaggtggataaatacaagg |
144401 |
T |
|
| Q |
107 |
cttgaccggtagtttaaggctataagcaagaatatggggttgattatgaagaggtatttgctccagtgtatacacatgacacaattagattggttatttt |
206 |
Q |
| |
|
|| ||| |||||| ||||||||||||| ||||| ||||| |||||| ||||||||||||||| ||| | | ||||||||||||||||||||||| |
|
|
| T |
144402 |
ctcgactagtagttaaaggctataagcaggaatacggggtcgattataaagaggtatttgctctggtggctcgccttgacacaattagattggttatttc |
144501 |
T |
|
| Q |
207 |
agtcgcaactcaa |
219 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
144502 |
agtcgcagctcaa |
144514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 7 - 219
Target Start/End: Original strand, 152323 - 152535
Alignment:
| Q |
7 |
tgggaattaacaaatcttccagaaggacagaaatctattggagtaaaacaagtgtatatgacaatgctcaatgcagatggtaaggtggataaatacaagg |
106 |
Q |
| |
|
||||||||||||||||| ||| | || |||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
152323 |
tgggaattaacaaatctaccaaaggggcagaaatctattggagtaaagtgggtgtataagacaaagctcaatgcagatggtaaggtggataaatacaagg |
152422 |
T |
|
| Q |
107 |
cttgaccggtagtttaaggctataagcaagaatatggggttgattatgaagaggtatttgctccagtgtatacacatgacacaattagattggttatttt |
206 |
Q |
| |
|
|| ||| |||||| ||||||||||||| ||||| ||||| |||||| ||||||||||||||| ||| | | ||||||||||||||||||||||| |
|
|
| T |
152423 |
ctcgactagtagttaaaggctataagcaggaatacggggtcgattataaagaggtatttgctctggtggctcgccttgacacaattagattggttatttc |
152522 |
T |
|
| Q |
207 |
agtcgcaactcaa |
219 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
152523 |
agtcgcagctcaa |
152535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 114 - 219
Target Start/End: Original strand, 28005627 - 28005732
Alignment:
| Q |
114 |
ggtagtttaaggctataagcaagaatatggggttgattatgaagaggtatttgctccagtgtatacacatgacacaattagattggttattttagtcgca |
213 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| ||| ||||||||| |||||| ||| || || ||||||||||| ||||||||||| || |||| |
|
|
| T |
28005627 |
ggtagttaaaggctataagcaagaatatggggttgactataaagaggtatatgctccggtggctatacttgacacaattatattggttatttcagccgca |
28005726 |
T |
|
| Q |
214 |
actcaa |
219 |
Q |
| |
|
|||||| |
|
|
| T |
28005727 |
actcaa |
28005732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 93 - 165
Target Start/End: Original strand, 27924654 - 27924726
Alignment:
| Q |
93 |
ggataaatacaaggcttgaccggtagtttaaggctataagcaagaatatggggttgattatgaagaggtattt |
165 |
Q |
| |
|
|||||||||||||||| | | ||||||| |||||||||||||||| ||||||||||||||| ||||| ||||| |
|
|
| T |
27924654 |
ggataaatacaaggctaggctggtagttaaaggctataagcaagagtatggggttgattataaagagttattt |
27924726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 101; Significance: 6e-50; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 7 - 219
Target Start/End: Original strand, 24326486 - 24326698
Alignment:
| Q |
7 |
tgggaattaacaaatcttccagaaggacagaaatctattggagtaaaacaagtgtatatgacaatgctcaatgcagatggtaaggtggataaatacaagg |
106 |
Q |
| |
|
||||||||||||||||||||| | || |||||||||||||||||||| || |||| ||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
24326486 |
tgggaattaacaaatcttccaaaggggcagaaatctattggagtaaagtgggtttataagacaaagctcaatgcagatggtaaggtggataaatataagg |
24326585 |
T |
|
| Q |
107 |
cttgaccggtagtttaaggctataagcaagaatatggggttgattatgaagaggtatttgctccagtgtatacacatgacacaattagattggttatttt |
206 |
Q |
| |
|
|| ||| ||||||| |||| |||||||| ||||| ||||| |||||| |||||||||||||||| ||| | | ||||||||||||||||||||||| |
|
|
| T |
24326586 |
ctcgactggtagttaaagggtataagcaggaatacggggtcgattataaagaggtatttgctccggtggctcgccttgacacaattagattggttatttc |
24326685 |
T |
|
| Q |
207 |
agtcgcaactcaa |
219 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
24326686 |
agtcgcagctcaa |
24326698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 228 - 314
Target Start/End: Complemental strand, 46627738 - 46627652
Alignment:
| Q |
228 |
tgtaaattgtgagatggaatacaattaaaatgaactttggaggagtcttatgcacccttatacaaatggcattcctcaaaagcctat |
314 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||| ||||||| |||| |
|
|
| T |
46627738 |
tgtaaattgtgaaatggaatacaattaaaatgaactttggaggagtcttctgcaaccttatacaaatgtcattcttcaaaagtctat |
46627652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 227 - 300
Target Start/End: Complemental strand, 46622044 - 46621971
Alignment:
| Q |
227 |
atgtaaattgtgagatggaatacaattaaaatgaactttggaggagtcttatgcacccttatacaaatggcatt |
300 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
46622044 |
atgtaaattgtgaaatggaatacaatcaaaatgaactttggaggagtcttctgcacccttatacaaatgtcatt |
46621971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University