View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7745_low_21 (Length: 378)
Name: NF7745_low_21
Description: NF7745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7745_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 13 - 362
Target Start/End: Original strand, 26165453 - 26165797
Alignment:
| Q |
13 |
aatataaaattataaagaaaagaagatatttaatgtgtgttaagatgtaacaaatgnnnnnnnnnnnnttaagataatacattccttaatatgctccctc |
112 |
Q |
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| T |
26165453 |
aatataaaattataaagaaaagaagatattgaatgtgtgttaagatgtaacaaatgaaaaaaa-----ttaagataatacattccttaatatgctccctc |
26165547 |
T |
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| Q |
113 |
gacatggtttgtaaagacaaattcgaaatgagtgtgacaattacgatgtacacgatccccttttttctc--cctgagaatagcttttatttatgtgaaat |
210 |
Q |
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| T |
26165548 |
gacatggtttgtaaagacaaattcgaaatgagtgtgacaattacgatgtacacgatccccttttttctctccctgagaatagcttttatttatgtgaaat |
26165647 |
T |
|
| Q |
211 |
taataatttaagagtagtgctatgaattgaagatggatgacagtatggctaaatatggtaacttgacaaaatcatcagaactcaacaattcacatttttc |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
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| T |
26165648 |
taataatttaagagtagtgctatgaattgaagatggatgacagtatggctaaatatggtaacttgacaaaatcat--gaactcaacaattcatatttttc |
26165745 |
T |
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| Q |
311 |
ataacatatagaagagtttattatcgtatagagtcatttgacatgataatac |
362 |
Q |
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| T |
26165746 |
ataacatatagaagagtttattatcgtatagagtcatttgacatgataatac |
26165797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 81 - 154
Target Start/End: Original strand, 26183087 - 26183160
Alignment:
| Q |
81 |
ttaagataatacattccttaatatgctccctcgacatggtttgtaaagacaaattcgaaatgagtgtgacaatt |
154 |
Q |
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| T |
26183087 |
ttaagataatccattccttaatatgctccctcgacatggtttgtaaagacaaatttgaaatgagtgtgacaatt |
26183160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 189
Target Start/End: Original strand, 26194184 - 26194256
Alignment:
| Q |
117 |
tggtttgtaaagacaaattcgaaatgagtgtgacaattacgatgtacacgatccccttttttctccctgagaa |
189 |
Q |
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| T |
26194184 |
tggtttgtaaagacgaatttgaagttagtgtaacaatttcacagtacacgatccccttttttctccccgagaa |
26194256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 117 - 184
Target Start/End: Original strand, 26177782 - 26177849
Alignment:
| Q |
117 |
tggtttgtaaagacaaattcgaaatgagtgtgacaattacgatgtacacgatccccttttttctccct |
184 |
Q |
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| T |
26177782 |
tggtttgtaaagacgaatttgaagttagtgtaacaatttcacagtacacgatccccttttttctccct |
26177849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 26183016 - 26183071
Alignment:
| Q |
13 |
aatataaaattataaagaaaagaagatatttaatgtgtgttaagatgtaacaaatg |
68 |
Q |
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|||||||||| ||||||||||| |||||| ||| |||||||||||||||| |||| |
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| T |
26183016 |
aatataaaatcgtaaagaaaagaggatattgaatatgtgttaagatgtaacgaatg |
26183071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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