View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7745_low_24 (Length: 369)
Name: NF7745_low_24
Description: NF7745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7745_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 53127842 - 53127492
Alignment:
| Q |
1 |
gttcacgccatttggatttgatgttgcatccagaagttcgagaaatattcaaaactagatgtaaaatcgttaaatacattcggaagtaccttgatgaccg |
100 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
53127842 |
gttcacgccatttggatttgatgttgcatcctgaagttcgagaaatattcaaaactagatgtaaaatcgttaaatacattcggaaataccttgatgaccg |
53127743 |
T |
|
| Q |
101 |
tgatttcttggaggtttgttctctgtccaagtattttgacaccatctgcttataatttctttccttccatttaccttttcttttcactactttcaggttg |
200 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53127742 |
tgatttcttggaggtttgttctctgtccaagtattctgacaccatctgcttataatttctttccttccatttaccttttcttttcactactttcaggttg |
53127643 |
T |
|
| Q |
201 |
aaacacctatgatgagcaagattgccggtggagcagcagctcgtccatttgtaactcatcacaatgaacttgacatgaaattattcatgagaattgctcc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53127642 |
aaacacctatgatgagcaagattgccggtggagcagcagctcgtccatttgcaactcatcacaatgaacttgacatgaaattattcatgagaattgctcc |
53127543 |
T |
|
| Q |
301 |
agaactttatctcaagcagctggttattggtgggctgggtcgtgtttatga |
351 |
Q |
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| T |
53127542 |
agaactttatctcaagcagctggttattggtgggctgggtcgtgtttatga |
53127492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 11 - 351
Target Start/End: Complemental strand, 53109988 - 53109650
Alignment:
| Q |
11 |
tttggatttgatgttgcatccagaagttcgagaaatattcaaaactagatgtaaaatcgttaaatacattcggaagtaccttgatgaccgtgatttcttg |
110 |
Q |
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| T |
53109988 |
tttggatttgatattgaattcagaaattcgagaaatattcaaaactagaagtaatatcatttcttacatccgaagattccttgatggccttgatttcatg |
53109889 |
T |
|
| Q |
111 |
gaggtttgttctctgtccaagtattttgacaccatctgcttataatttctttccttccatttaccttttcttttcactactttcaggttgaaacacctat |
210 |
Q |
| |
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|||||||||||| |||||| |||| ||| ||| |||||||||| |||| | |||| ||||||| |||||||||||||||||||||||||||||||| |
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| T |
53109888 |
gaggtttgttct--gtccaaatattctgatgccagttgcttataatatcttccattccctttacctactcttttcactactttcaggttgaaacacctat |
53109791 |
T |
|
| Q |
211 |
gatgagcaagattgccggtggagcagcagctcgtccatttgtaactcatcacaatgaacttgacatgaaattattcatgagaattgctccagaactttat |
310 |
Q |
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||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
53109790 |
gatgaacacgattgccggtggagcagcagctcgcccatttgtaactcatcacaatgaacttgacttgaagttattcatgagaattgctccagaactttat |
53109691 |
T |
|
| Q |
311 |
ctcaagcagctggttattggtgggctgggtcgtgtttatga |
351 |
Q |
| |
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| T |
53109690 |
ctcaagcagctggttgttggtgggctggaacgtgtttatga |
53109650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 12 - 351
Target Start/End: Complemental strand, 53115411 - 53115072
Alignment:
| Q |
12 |
ttggatttgatgttgcatccagaagttcgagaaatattcaaaactagatgtaaaatcgttaaatacattcggaagtaccttgatgaccgtgatttcttgg |
111 |
Q |
| |
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||||||||||| ||| || |||| |||||||||||||| | |||||| || |||| || ||||| | || | |||||||||||| |||||| ||| |
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| T |
53115411 |
ttggatttgatattgaattcagatattcgagaaatattccacactagaaatagaatcatttcttacatccagaggcaccttgatgaccttgattttatgg |
53115312 |
T |
|
| Q |
112 |
aggtttgttctctgtccaagtattttgacaccatctgcttataatttctttccttccatttaccttttcttttcactactttcaggttgaaacacctatg |
211 |
Q |
| |
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|||||||||||||||||||||||| ||| ||| |||||||| | |||| | | || ||||||| |||||||| ||||||||||||||||||||||||| |
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| T |
53115311 |
aggtttgttctctgtccaagtattctgatgccagttgcttatactatcttccatcccctttacctattcttttcgctactttcaggttgaaacacctatg |
53115212 |
T |
|
| Q |
212 |
atgagcaagattgccggtggagcagcagctcgtccatttgtaactcatcacaatgaacttgacatgaaattattcatgagaattgctccagaactttatc |
311 |
Q |
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|||| ||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
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| T |
53115211 |
atgaacaagattgctggtggagcagcagctcgcccatttgtaactcaccacaatgaacttgacttgaagttattcatgagaattgctccagaactttatc |
53115112 |
T |
|
| Q |
312 |
tcaagcagctggttattggtgggctgggtcgtgtttatga |
351 |
Q |
| |
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|||||||||||||| |||||||| ||| ||||||||||| |
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| T |
53115111 |
tcaagcagctggttgttggtgggatggaacgtgtttatga |
53115072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 193 - 351
Target Start/End: Original strand, 15839349 - 15839507
Alignment:
| Q |
193 |
tcaggttgaaacacctatgatgagcaagattgccggtggagcagcagctcgtccatttgtaactcatcacaatgaacttgacatgaaattattcatgaga |
292 |
Q |
| |
|
||||||||||||||||||||||| || |||||| ||||| || || ||||| ||||||||||||||||| ||||| ||| |||||| ||||||||||||| |
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| T |
15839349 |
tcaggttgaaacacctatgatgaacatgattgctggtggtgctgctgctcggccatttgtaactcatcataatgaccttaacatgagattattcatgaga |
15839448 |
T |
|
| Q |
293 |
attgctccagaactttatctcaagcagctggttattggtgggctgggtcgtgtttatga |
351 |
Q |
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|||||||||||||| ||||||||| || ||||| ||||||| ||| ||||||||||| |
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| T |
15839449 |
attgctccagaactctatctcaagaagttggttgttggtggtctgaaccgtgtttatga |
15839507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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