View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7745_low_27 (Length: 322)

Name: NF7745_low_27
Description: NF7745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7745_low_27
NF7745_low_27
[»] chr4 (11 HSPs)
chr4 (72-302)||(9750479-9750709)
chr4 (188-292)||(19335316-19335420)
chr4 (154-239)||(21166555-21166640)
chr4 (16-75)||(9760083-9760142)
chr4 (211-300)||(25117996-25118085)
chr4 (122-231)||(9739960-9740069)
chr4 (118-285)||(20316208-20316373)
chr4 (150-240)||(17380925-17381015)
chr4 (118-292)||(17661837-17662016)
chr4 (258-300)||(9849883-9849925)
chr4 (154-234)||(7613681-7613761)
[»] chr7 (17 HSPs)
chr7 (118-298)||(2505724-2505904)
chr7 (118-292)||(17887766-17887939)
chr7 (125-285)||(21228354-21228514)
chr7 (125-223)||(21229051-21229149)
chr7 (118-299)||(26133236-26133418)
chr7 (175-229)||(12865159-12865214)
chr7 (188-231)||(16799156-16799199)
chr7 (188-230)||(1280399-1280441)
chr7 (192-233)||(1465404-1465445)
chr7 (255-300)||(10418436-10418481)
chr7 (118-231)||(10479431-10479546)
chr7 (190-275)||(8158844-8158927)
chr7 (190-300)||(14968727-14968837)
chr7 (190-300)||(15398203-15398313)
chr7 (255-300)||(21502733-21502778)
chr7 (188-229)||(21546450-21546491)
chr7 (214-297)||(8038901-8038984)
[»] chr3 (9 HSPs)
chr3 (118-239)||(51118517-51118639)
chr3 (175-300)||(3002936-3003060)
chr3 (118-232)||(25530767-25530881)
chr3 (118-165)||(3462100-3462147)
chr3 (154-231)||(30510771-30510848)
chr3 (188-300)||(20338332-20338444)
chr3 (127-261)||(20290470-20290604)
chr3 (219-297)||(23637494-23637572)
chr3 (154-231)||(7487477-7487554)
[»] chr8 (9 HSPs)
chr8 (118-239)||(20268329-20268450)
chr8 (118-239)||(21054958-21055079)
chr8 (154-227)||(27305669-27305742)
chr8 (255-300)||(19784953-19784998)
chr8 (118-231)||(33983061-33983174)
chr8 (118-273)||(26613776-26613931)
chr8 (157-223)||(17970468-17970534)
chr8 (187-232)||(12656308-12656353)
chr8 (255-300)||(24381499-24381544)
[»] chr1 (7 HSPs)
chr1 (118-300)||(27911944-27912125)
chr1 (118-233)||(10828459-10828574)
chr1 (125-300)||(31260668-31260844)
chr1 (118-231)||(34104866-34104979)
chr1 (159-231)||(21448734-21448806)
chr1 (118-232)||(21536942-21537056)
chr1 (228-300)||(35133763-35133835)
[»] scaffold0059 (1 HSPs)
scaffold0059 (118-298)||(63984-64164)
[»] chr5 (8 HSPs)
chr5 (122-299)||(28280162-28280339)
chr5 (118-231)||(32415866-32415979)
chr5 (128-273)||(20680485-20680631)
chr5 (118-233)||(23032611-23032726)
chr5 (255-300)||(15520854-15520899)
chr5 (159-233)||(20102969-20103043)
chr5 (263-300)||(18939399-18939436)
chr5 (188-249)||(26456045-26456106)
[»] chr2 (8 HSPs)
chr2 (118-217)||(42153596-42153695)
chr2 (118-290)||(16042699-16042868)
chr2 (255-300)||(34579946-34579991)
chr2 (255-300)||(34585695-34585740)
chr2 (190-225)||(27747651-27747686)
chr2 (255-300)||(8445646-8445691)
chr2 (154-231)||(19104003-19104080)
chr2 (190-297)||(32438788-32438895)
[»] chr6 (10 HSPs)
chr6 (170-232)||(20404100-20404162)
chr6 (188-273)||(15550961-15551046)
chr6 (125-297)||(9941364-9941536)
chr6 (126-232)||(34395402-34395507)
chr6 (123-231)||(12585860-12585967)
chr6 (122-195)||(20723570-20723643)
chr6 (258-300)||(21079896-21079938)
chr6 (186-231)||(17358397-17358442)
chr6 (263-299)||(22564730-22564766)
chr6 (260-292)||(34395540-34395572)
[»] scaffold0468 (1 HSPs)
scaffold0468 (117-281)||(2192-2357)
[»] scaffold0340 (1 HSPs)
scaffold0340 (154-231)||(16883-16960)


Alignment Details
Target: chr4 (Bit Score: 183; Significance: 6e-99; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 72 - 302
Target Start/End: Complemental strand, 9750709 - 9750479
Alignment:
Q  72 atggggttgtagaataaggttttagttttgcttgtgttagatccactttcagtcatttttatttagttttaattcaagataaaggagttttagaaaaact 171  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  9750709 atggggttgtagaagaaggttttagttttgcttgtgttagatccactttcagtcatatttatttagttttaattcaagataaaggagttttagaaaaact 9750610  T
Q  172 gcatatggttttcagaacattttgtaatgttttcatttcgagtcatttaattctagtttttctgaaacttagtaattccaagttgttttttatgtaattc 271  Q
    ||||||| || ||| || |||||||||||||||||||||||||||| ||||| ||||||| ||||||| ||||||||||||| |||||||||||||||||    
T  9750609 gcatatgattgtcataatattttgtaatgttttcatttcgagtcatctaattttagttttcctgaaacctagtaattccaaggtgttttttatgtaattc 9750510  T
Q  272 aagaagaaatcatgaaaatcgacaaagcaca 302  Q
    ||||||||||||||||||||| |||||||||    
T  9750509 aagaagaaatcatgaaaatcggcaaagcaca 9750479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 188 - 292
Target Start/End: Original strand, 19335316 - 19335420
Alignment:
Q  188 acattttgtaatgttttcatttcgagtcatttaattctagtttttctgaaacttagtaattccaagttgttttttatgtaattcaagaagaaatcatgaa 287  Q
    |||||||||||||||||||||||||||||| |||||||||| || || ||||  || |||| |||| ||||||| ||||||||||||||||||||||| |    
T  19335316 acattttgtaatgttttcatttcgagtcatgtaattctagtcttcctaaaaccgagcaatttcaaggtgtttttgatgtaattcaagaagaaatcatgca 19335415  T
Q  288 aatcg 292  Q
    |||||    
T  19335416 aatcg 19335420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 154 - 239
Target Start/End: Original strand, 21166555 - 21166640
Alignment:
Q  154 aggagttttagaaaaactgcatatggttttcagaacattttgtaatgttttcatttcgagtcatttaattctagtttttctgaaac 239  Q
    |||||||||||||||| |||||||| ||| ||  |||||||||||| |||||||||||||| || |||||||||||||||||||||    
T  21166555 aggagttttagaaaaattgcatatgatttacatgacattttgtaatattttcatttcgagtaatgtaattctagtttttctgaaac 21166640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 9760142 - 9760083
Alignment:
Q  16 ataacaatttcaccctctatatttagaaaaatatgttcttttgaccctttatctatatgg 75  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  9760142 ataacaatttcaccatctatatttaggaaaatatgttcttttgaccctttatctatatgg 9760083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 211 - 300
Target Start/End: Original strand, 25117996 - 25118085
Alignment:
Q  211 gagtcatttaattctagtttttc-tgaaacttagtaattccaagttgttttttatgtaattcaagaagaaatcatgaaaatcgacaaagca 300  Q
    ||||||| ||||||||||||||| |||||| ||| ||||| ||| ||||||  ||||||||||||||||||||||| ||||||||||||||    
T  25117996 gagtcatgtaattctagtttttcctgaaacatagcaattctaaggtgttttg-atgtaattcaagaagaaatcatgcaaatcgacaaagca 25118085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 122 - 231
Target Start/End: Original strand, 9739960 - 9740069
Alignment:
Q  122 agtcatttttatttagttttaattcaagataaaggagttttagaaaaactgcatatggttttcagaacattttgtaatgttttcatttcgagtcatttaa 221  Q
    |||||||||||||||||||| ||  ||  || ||||||||||||| || |||||||| ||||  | |  |||||||||||||| |||||||||||| |||    
T  9739960 agtcatttttatttagttttgatctaaattagaggagttttagaacaattgcatatgatttttgggatgttttgtaatgtttttatttcgagtcatgtaa 9740059  T
Q  222 ttctagtttt 231  Q
    ||||||||||    
T  9740060 ttctagtttt 9740069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 118 - 285
Target Start/End: Original strand, 20316208 - 20316373
Alignment:
Q  118 tttcagtcatttttatttagttttaattcaagataaaggagttttagaaaaactgcatatggttttcagaacattttgtaatgttttcatttcgagtcat 217  Q
    ||||||| ||||||||||||||||||| ||| ||| | |||| |||||| || | | || | ||||  || |||||||||||| ||||  || |||||||    
T  20316208 tttcagttatttttatttagttttaatccaaaatagatgagtattagaataatttcctacgattttggga-cattttgtaatgctttctatttgagtcat 20316306  T
Q  218 ttaattctagtttttctgaaacttagtaattccaagttgttttttatgtaattcaagaagaaatcatg 285  Q
     |||||||||||||||  |||| | ||||||  | | || |||| |||||||||||||||||||||||    
T  20316307 gtaattctagtttttccaaaacattgtaattttatggtg-ttttgatgtaattcaagaagaaatcatg 20316373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 150 - 240
Target Start/End: Complemental strand, 17381015 - 17380925
Alignment:
Q  150 ataaaggagttttagaaaaactgcatatggttttcagaacattttgtaatgttttcatttcgagtcatttaattctagtttttctgaaact 240  Q
    |||||||||||||| || |||| | |||||||||  | | ||||||| ||||||||||||||||||||  |||||||||||| | ||||||    
T  17381015 ataaaggagttttaaaacaacttcctatggtttttgggatattttgtgatgttttcatttcgagtcatgcaattctagttttcccgaaact 17380925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 118 - 292
Target Start/End: Complemental strand, 17662016 - 17661837
Alignment:
Q  118 tttcagtcattttt-atttagttttaattcaagataaaggagttttagaaaaactgcatatggttttcagaacattttgtaatg-ttttcatttcgagtc 215  Q
    |||||||||||||| ||||||||||||| ||| |||||||||| |||||| ||  || |||| |||||   ||||||  ||||| ||||||||| |||||    
T  17662016 tttcagtcattttttatttagttttaatccaaaataaaggagtattagaacaatcgcctatgattttctcgacatttcataatgtttttcattt-gagtc 17661918  T
Q  216 atttaattctagtttttct-----gaaacttagtaattccaagttgttttttatgtaattcaagaagaaatcatgaaaatcg 292  Q
    || |||||||||| ||| |      |||| ||| ||||| | | || |||| ||||||||||||||||||||||| ||||||    
T  17661917 atgtaattctagtatttttatttcaaaacatagcaattctagggtg-ttttgatgtaattcaagaagaaatcatgcaaatcg 17661837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 300
Target Start/End: Original strand, 9849883 - 9849925
Alignment:
Q  258 tttttatgtaattcaagaagaaatcatgaaaatcgacaaagca 300  Q
    ||||||||||||||| |||||||||||| |||||| |||||||    
T  9849883 tttttatgtaattcacgaagaaatcatgcaaatcggcaaagca 9849925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 234
Target Start/End: Complemental strand, 7613761 - 7613681
Alignment:
Q  154 aggagttttagaaaaactgcatatggttttcagaacattttgtaatgttttcatttcgagtcatttaattctagtttttct 234  Q
    |||||| |||||| || |||||||||| |||   | ||||||||||||||||  || |||| || ||||||||||||||||    
T  7613761 aggagtattagaacaattgcatatggtcttcgagatattttgtaatgttttctatttgagttatgtaattctagtttttct 7613681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 118 - 298
Target Start/End: Complemental strand, 2505904 - 2505724
Alignment:
Q  118 tttcagtcatttttatttagttttaattcaagataaaggagttttagaaaaactgcatatggttttcagaacattttgtaatgttttcatttcgagtcat 217  Q
    |||||||||||||||||||||||  || ||| ||| ||||||||||||| || ||  |||||||||| |||||||||| ||||||||| |||||||||||    
T  2505904 tttcagtcatttttatttagtttcgatccaaaatagaggagttttagaacaattgtctatggttttcggaacattttgcaatgttttcttttcgagtcat 2505805  T
Q  218 ttaattctagtttttctgaaacttagtaattccaagttgttttttatgtaattcaagaagaaatcatgaaaatcgacaaag 298  Q
     ||||||||||||| | ||||| ||| ||||  |||    |||| ||||||||||||||||||||||| |||||| |||||    
T  2505804 gtaattctagttttcccgaaacatagcaattttaagggtgttttgatgtaattcaagaagaaatcatgcaaatcgtcaaag 2505724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 118 - 292
Target Start/End: Original strand, 17887766 - 17887939
Alignment:
Q  118 tttcagtcatttttatttagttttaattcaagataaaggagttttagaaaaactgcatatggttttcagaacattttgtaatgttttcatttcgagtcat 217  Q
    ||||||||||||||| |||||||| || ||||||| |||||||||||| ||| ||| |||||||||  | |||||||||||||||||||||| |||||||    
T  17887766 tttcagtcatttttagttagttttgatccaagatagaggagttttagagaaattgcctatggttttagggacattttgtaatgttttcattttgagtcat 17887865  T
Q  218 ttaattctagtttttctgaaacttagtaattccaagttgttttttatgtaattcaagaagaaatcatgaaaatcg 292  Q
     ||||| || ||||||  |||   || ||||| | | ||||||| |||||||||||||||||| |||| ||||||    
T  17887866 gtaattgtactttttc-aaaatcaagcaattctatggtgtttttgatgtaattcaagaagaaaacatgcaaatcg 17887939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 125 - 285
Target Start/End: Complemental strand, 21228514 - 21228354
Alignment:
Q  125 catttttatttagttttaattcaagataaaggagttttagaaaaactgcatatggttttcagaacattttgtaatgttttcatttcgagtcatttaattc 224  Q
    ||||||||||||||||| || |||| || ||||||||||||  || ||| |||||||||  | ||||||| ||||||||||||||||| |||| |||||     
T  21228514 catttttatttagttttgatccaagttacaggagttttagagcaattgcctatggtttttgggacattttttaatgttttcatttcgaatcatgtaatta 21228415  T
Q  225 tagtttttctgaaacttagtaattccaagttgttttttatgtaattcaagaagaaatcatg 285  Q
    |||||||   |||||  || | ||| | | ||||||| |||||||||||| | ||||||||    
T  21228414 tagttttctcgaaacgaagcagttctagggtgtttttgatgtaattcaaggaaaaatcatg 21228354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 125 - 223
Target Start/End: Complemental strand, 21229149 - 21229051
Alignment:
Q  125 catttttatttagttttaattcaagataaaggagttttagaaaaactgcatatggttttcagaacattttgtaatgttttcatttcgagtcatttaatt 223  Q
    ||||||||||||||||| || |||| || ||||||||||||  || ||| |||||||||  | ||||||| ||||||||||||||||| |||| |||||    
T  21229149 catttttatttagttttgatccaagttacaggagttttagagcaattgcctatggtttttgggacattttttaatgttttcatttcgaatcatgtaatt 21229051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 118 - 299
Target Start/End: Original strand, 26133236 - 26133418
Alignment:
Q  118 tttcagtcatttttattt-agttttaattcaagataaaggagttttagaaaaactgcatatggttttcagaacattttgtaatgttttcatttcgagtca 216  Q
    ||||| |||||||| ||| |||||| ||  ||| || ||||| ||||||| || ||  |||||||||||| ||||||||||||||||||||||  | | |    
T  26133236 tttcaatcatttttttttcagttttgatcaaagttataggagatttagaagaattgactatggttttcaggacattttgtaatgttttcatttataataa 26133335  T
Q  217 tttaattctagtttttctgaaacttagtaattccaagttgttttttatgtaattcaagaagaaatcatgaaaatcgacaaagc 299  Q
    | ||||| || |||| | ||||   || ||||  | ||||||||| ||||||||||||   |||||||| |||||||||||||    
T  26133336 tgtaattatatttttcccgaaatcaagcaattatatgttgtttttgatgtaattcaaggcaaaatcatgcaaatcgacaaagc 26133418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 229
Target Start/End: Complemental strand, 12865214 - 12865159
Alignment:
Q  175 tatggttttcaga-acattttgtaatgttttcatttcgagtcatttaattctagtt 229  Q
    ||||||||| ||| |||||||||||||||||||| ||||||||| |||||||||||    
T  12865214 tatggttttaagagacattttgtaatgttttcatatcgagtcatgtaattctagtt 12865159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 231
Target Start/End: Original strand, 16799156 - 16799199
Alignment:
Q  188 acattttgtaatgttttcatttcgagtcatttaattctagtttt 231  Q
    ||||||||||||||||||||||||| |||| |||||||||||||    
T  16799156 acattttgtaatgttttcatttcgaatcatgtaattctagtttt 16799199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 230
Target Start/End: Complemental strand, 1280441 - 1280399
Alignment:
Q  188 acattttgtaatgttttcatttcgagtcatttaattctagttt 230  Q
    |||||||||| ||||||||||||||||||| ||||||||||||    
T  1280441 acattttgtattgttttcatttcgagtcatgtaattctagttt 1280399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 192 - 233
Target Start/End: Complemental strand, 1465445 - 1465404
Alignment:
Q  192 tttgtaatgttttcatttcgagtcatttaattctagtttttc 233  Q
    |||||||||||||||||||||||||| ||||| |||||||||    
T  1465445 tttgtaatgttttcatttcgagtcatgtaattatagtttttc 1465404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 255 - 300
Target Start/End: Complemental strand, 10418481 - 10418436
Alignment:
Q  255 tgttttttatgtaattcaagaagaaatcatgaaaatcgacaaagca 300  Q
    |||||||||||||||||| |||||||||||| |||||| |||||||    
T  10418481 tgttttttatgtaattcacgaagaaatcatgcaaatcggcaaagca 10418436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 231
Target Start/End: Original strand, 10479431 - 10479546
Alignment:
Q  118 tttcagtcatttttatttagttttaattcaagataaaggagttttagaaaaactg--catatggttttcagaacattttgtaatgttttcatttcgagtc 215  Q
    ||||||||||||||||||||||| |||||||  || ||||||||||||   | ||   || |  |||| || | ||||||||||||||||||||| ||||    
T  10479431 tttcagtcatttttatttagtttaaattcaaattagaggagttttagagcgattgttgatgttttttttaggatattttgtaatgttttcatttcaagtc 10479530  T
Q  216 atttaattctagtttt 231  Q
    || ||||| |||||||    
T  10479531 atgtaattttagtttt 10479546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 275
Target Start/End: Complemental strand, 8158927 - 8158844
Alignment:
Q  190 attttgtaatgttttcatttcgagtcatttaattctagtttttctgaaacttagtaattccaagttgttttttatgtaattcaaga 275  Q
    ||||||||||||||  |||||||||||| ||||| ||||||| | |||||  || ||||  | | |||||||||||||||||||||    
T  8158927 attttgtaatgttt--atttcgagtcatgtaattttagttttcccgaaaccaagaaattttagggtgttttttatgtaattcaaga 8158844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 300
Target Start/End: Original strand, 14968727 - 14968837
Alignment:
Q  190 attttgtaatgttttcatttcgagtcatttaattctagtttttctgaaacttagtaattccaagttgttttttatgtaattcaagaagaaatcatgaaaa 289  Q
    ||||||||||||||| |||||||||||| |||||| ||||||  |||| |  |  |||||  || | |||||||||||||||||    || ||||| |||    
T  14968727 attttgtaatgtttttatttcgagtcatgtaattcgagttttcttgaatccaatcaattcttagcttttttttatgtaattcaatgcaaagtcatgcaaa 14968826  T
Q  290 tcgacaaagca 300  Q
    |||||||||||    
T  14968827 tcgacaaagca 14968837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 300
Target Start/End: Original strand, 15398203 - 15398313
Alignment:
Q  190 attttgtaatgttttcatttcgagtcatttaattctagtttttctgaaacttagtaattccaagttgttttttatgtaattcaagaagaaatcatgaaaa 289  Q
    ||||||||||||||| |||||||||||| |||||| ||||||  |||| |  |  |||||  || | |||||||||||||||||    || ||||| |||    
T  15398203 attttgtaatgtttttatttcgagtcatgtaattcgagttttcttgaatccaatcaattcttagcttttttttatgtaattcaatgcaaagtcatgcaaa 15398302  T
Q  290 tcgacaaagca 300  Q
    |||||||||||    
T  15398303 tcgacaaagca 15398313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 300
Target Start/End: Complemental strand, 21502778 - 21502733
Alignment:
Q  255 tgttttttatgtaattcaagaagaaatcatgaaaatcgacaaagca 300  Q
    ||||||| | |||||||| |||||||||||| ||||||||||||||    
T  21502778 tgtttttgaggtaattcacgaagaaatcatgcaaatcgacaaagca 21502733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 229
Target Start/End: Complemental strand, 21546491 - 21546450
Alignment:
Q  188 acattttgtaatgttttcatttcgagtcatttaattctagtt 229  Q
    |||||||||||||||||||| || |||||| |||||||||||    
T  21546491 acattttgtaatgttttcatatcaagtcatgtaattctagtt 21546450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 297
Target Start/End: Complemental strand, 8038984 - 8038901
Alignment:
Q  214 tcatttaattctagtttttc-tgaaacttagtaattccaagttgttttttatgtaattcaagaagaaatcatgaaaatcgacaaa 297  Q
    |||| ||||||||||||||| |||||| ||| ||||| | | ||||||  ||||||||||| ||||||||||  |||||||||||    
T  8038984 tcatgtaattctagtttttcctgaaacatagcaattctagggtgttttg-atgtaattcaaaaagaaatcatccaaatcgacaaa 8038901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 5e-25; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 118 - 239
Target Start/End: Original strand, 51118517 - 51118639
Alignment:
Q  118 tttcagtcatttttatttagttttaattcaagat-aaaggagttttagaaaaactgcatatggttttcagaacattttgtaatgttttcatttcgagtca 216  Q
    |||||||||||||||||||||||| || ||| || ||||||||||||||| || ||| |||||||||| | |  | |||||||||||||||||||| |||    
T  51118517 tttcagtcatttttatttagttttgatccaaaattaaaggagttttagaacaattgcctatggttttcgggaattattgtaatgttttcatttcgaatca 51118616  T
Q  217 tttaattctagtttttctgaaac 239  Q
    | ||||||||||||| |||||||    
T  51118617 tgtaattctagttttcctgaaac 51118639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 175 - 300
Target Start/End: Complemental strand, 3003060 - 3002936
Alignment:
Q  175 tatggttttcagaacattttgtaatgttttcatttcgagtcatttaattctagtttttctgaaacttagtaattccaagttgttttttatgtaattcaag 274  Q
    |||| ||||||| | ||||||||||||||||  || ||||||| |||||||| |||| ||||||| ||| ||||| | | ||||||  ||||||||||||    
T  3003060 tatgattttcaggatattttgtaatgttttctatttgagtcatgtaattctacttttcctgaaacatagcaattctacggtgttttg-atgtaattcaag 3002962  T
Q  275 aagaaatcatgaaaatcgacaaagca 300  Q
    ||||||||||| |||||| |||||||    
T  3002961 aagaaatcatgcaaatcggcaaagca 3002936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 118 - 232
Target Start/End: Original strand, 25530767 - 25530881
Alignment:
Q  118 tttcagtcatttttatttagttttaattcaagataaaggagttttagaaaaactgcatatggttttcagaacattttgtaatgttttcatttcgagtcat 217  Q
    ||||||||||||||||||||||||||| ||| ||| |||||| |||||| ||||   ||| |||||  | ||||||| || || ||||  || |||||||    
T  25530767 tttcagtcatttttatttagttttaatccaaaatagaggagtattagaacaactatttatagtttttgggacattttttagtgctttctatttgagtcat 25530866  T
Q  218 ttaattctagttttt 232  Q
     ||||||||||||||    
T  25530867 ataattctagttttt 25530881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 118 - 165
Target Start/End: Original strand, 3462100 - 3462147
Alignment:
Q  118 tttcagtcatttttatttagttttaattcaagataaaggagttttaga 165  Q
    ||||||||||||||||||||||| | |||||||||||||| |||||||    
T  3462100 tttcagtcatttttatttagtttaatttcaagataaaggaattttaga 3462147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 154 - 231
Target Start/End: Complemental strand, 30510848 - 30510771
Alignment:
Q  154 aggagttttagaaaaactgcatatggttttcagaacattttgtaatgttttcatttcgagtcatttaattctagtttt 231  Q
    ||||||||||||| || ||  |||||||| | | |||||||||||||||||||||| || |||| ||||| |||||||    
T  30510848 aggagttttagaataattgtttatggtttgcgggacattttgtaatgttttcattttgaatcatgtaattttagtttt 30510771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 300
Target Start/End: Original strand, 20338332 - 20338444
Alignment:
Q  188 acattttgtaatgttttcatttcgagtcatttaattctagtttttctgaaacttagtaattccaagttgttttttatgtaattcaagaagaaatcatgaa 287  Q
    ||||||||||||||||||||||||| |||| || ||  |||||| | ||||| ||  |||| || | ||||||| |||||||| |||   |||||||| |    
T  20338332 acattttgtaatgttttcatttcgaatcatgtagttaaagttttcccgaaacctaacaattacagggtgtttttgatgtaattaaaggcaaaatcatgca 20338431  T
Q  288 aatcgacaaagca 300  Q
    ||||| |||||||    
T  20338432 aatcggcaaagca 20338444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 127 - 261
Target Start/End: Original strand, 20290470 - 20290604
Alignment:
Q  127 tttttatttagttttaattcaagataaaggagttttagaaaaactgcatatggttttcagaacattttgtaatgttttcatttcgagtc-atttaattct 225  Q
    ||||||||||| ||| || ||||||  | ||||||||||| |||||| |||| ||||  ||  |||||||||||||||||||||| ||| || |||||      
T  20290470 tttttatttaggtttgatccaagattgaagagttttagaacaactgcctatgatttttggat-attttgtaatgttttcatttcgtgtcaatgtaattaa 20290568  T
Q  226 agtttttctgaaacttagtaattccaagttgttttt 261  Q
    |||||| | ||||| ||  ||||||||| |||||||    
T  20290569 agttttcccgaaacctaacaattccaagatgttttt 20290604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 297
Target Start/End: Complemental strand, 23637572 - 23637494
Alignment:
Q  219 taattctagtttttctgaaacttagtaattccaagttgttttttatgtaattcaagaagaaatcatgaaaatcgacaaa 297  Q
    |||||||| |||| ||||||  ||| ||||| | | ||||||| |||||||||| ||| |||||||| |||||||||||    
T  23637572 taattctatttttcctgaaatatagcaattctagggtgtttttgatgtaattcacgaataaatcatggaaatcgacaaa 23637494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 231
Target Start/End: Original strand, 7487477 - 7487554
Alignment:
Q  154 aggagttttagaaaaactgcatatggttttcagaacattttgtaatgttttcatttcgagtcatttaattctagtttt 231  Q
    |||||||||| || || |||||||| |||   | ||||||  |||||||||| ||||||||||| |||||||||||||    
T  7487477 aggagttttataacaattgcatatgatttaagggacatttcataatgttttcgtttcgagtcatgtaattctagtttt 7487554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 118 - 239
Target Start/End: Complemental strand, 20268450 - 20268329
Alignment:
Q  118 tttcagtcatttttatttagttttaattcaagataaaggagttttagaaaaactgcatatggttttcagaacattttgtaatgttttcatttcgagtcat 217  Q
    ||||| |||||||||||| ||||| ||  |  ||| ||||||||||||| || ||  |||||||||| ||| ||||||||||||||||||||||||||||    
T  20268450 tttcaatcatttttatttggttttgatctataatagaggagttttagaacaattggttatggttttcggaatattttgtaatgttttcatttcgagtcat 20268351  T
Q  218 ttaattctagtttttctgaaac 239  Q
     ||||||||||||  |||||||    
T  20268350 gtaattctagtttccctgaaac 20268329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 118 - 239
Target Start/End: Complemental strand, 21055079 - 21054958
Alignment:
Q  118 tttcagtcatttttatttagttttaattcaagataaaggagttttagaaaaactgcatatggttttcagaacattttgtaatgttttcatttcgagtcat 217  Q
    ||||| |||||||||||| ||||| ||  |  ||| ||||||||||||| || ||  |||||||||| ||| ||||||||||||||||||||||||||||    
T  21055079 tttcaatcatttttatttggttttgatctataatagaggagttttagaacaattggttatggttttcggaatattttgtaatgttttcatttcgagtcat 21054980  T
Q  218 ttaattctagtttttctgaaac 239  Q
     ||||||||||||  |||||||    
T  21054979 gtaattctagtttccctgaaac 21054958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 27305742 - 27305669
Alignment:
Q  154 aggagttttagaaaaactgcatatggttttcagaacattttgtaatgttttcatttcgagtcatttaattctag 227  Q
    ||||||||||| |||| ||  ||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  27305742 aggagttttagtaaaaatgtctatggttttcagaacattttgtaatattttcatttcgagtcatgtaattctag 27305669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 255 - 300
Target Start/End: Original strand, 19784953 - 19784998
Alignment:
Q  255 tgttttttatgtaattcaagaagaaatcatgaaaatcgacaaagca 300  Q
    ||||||| |||||||||| |||||||||||| ||||||||||||||    
T  19784953 tgtttttgatgtaattcacgaagaaatcatgcaaatcgacaaagca 19784998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 118 - 231
Target Start/End: Complemental strand, 33983174 - 33983061
Alignment:
Q  118 tttcagtcatttttatttagttttaattcaagataaaggagttttagaaaaactgcatatggttttcagaacattttgtaatgttttcatttcgagtcat 217  Q
    |||| |||||||||||||| |||| ||  ||| |  ||||||||||||  ||  || |||||||||| |||||||||||||| ||||||||| |||| ||    
T  33983174 tttcggtcatttttatttacttttgatctaagttgtaggagttttagatcaatagcctatggttttcggaacattttgtaatattttcattttgagtaat 33983075  T
Q  218 ttaattctagtttt 231  Q
      ||||||| ||||    
T  33983074 gcaattctaatttt 33983061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 118 - 273
Target Start/End: Original strand, 26613776 - 26613931
Alignment:
Q  118 tttcagtcatttttatttagttttaattcaagataaaggagttttagaaaaactgcatatggttttcagaacattttgtaatgttttcatttcgagtcat 217  Q
    |||||||||||||||||||||||| ||  ||  || |||| |||||||| || ||| |||||| ||  | | |||||||||| |||||||||| |||||     
T  26613776 tttcagtcatttttatttagttttcatctaaattagaggaattttagaataattgcctatggtatttgggaaattttgtaattttttcatttctagtcaa 26613875  T
Q  218 ttaattctagtttttctgaaacttagtaattccaagttgttttttatgtaattcaa 273  Q
     ||||| || |||| | |||||| |  | ||| | | ||||||| |||||||||||    
T  26613876 gtaattatatttttccagaaactaaacagttctaggatgtttttgatgtaattcaa 26613931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 223
Target Start/End: Complemental strand, 17970534 - 17970468
Alignment:
Q  157 agttttagaaaaactgcatatggttttcagaacattttgtaatgttttcatttcgagtcatttaatt 223  Q
    |||||||||| || ||| | ||||||||||||  |||| |||||||||||||| ||||||| |||||    
T  17970534 agttttagaacaattgcttctggttttcagaatcttttttaatgttttcattttgagtcatgtaatt 17970468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 12656308 - 12656353
Alignment:
Q  187 aacattttgtaatgttttcatttcgagtcatttaattctagttttt 232  Q
    ||||||||||||||||||| ||||||||| | ||||||||| ||||    
T  12656308 aacattttgtaatgttttcttttcgagtcgtgtaattctagctttt 12656353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 300
Target Start/End: Original strand, 24381499 - 24381544
Alignment:
Q  255 tgttttttatgtaattcaagaagaaatcatgaaaatcgacaaagca 300  Q
    ||||||| |||||||||| |||||||||||| |||||| |||||||    
T  24381499 tgtttttgatgtaattcacgaagaaatcatgcaaatcggcaaagca 24381544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 118 - 300
Target Start/End: Complemental strand, 27912125 - 27911944
Alignment:
Q  118 tttcagtcattttt-atttagttttaattcaagataaaggagttttagaaaaactgcatatggttttcagaacattttgtaatgttttcatttcgagtca 216  Q
    |||||||||||||| ||||||||||||| ||| ||| |||||| |||||| || ||  |||| ||||||| |||||||||||||||| |  || ||||||    
T  27912125 tttcagtcattttttatttagttttaatccaaaatagaggagtattagaacaattgtctatgattttcaggacattttgtaatgtttgctatttgagtca 27912026  T
Q  217 tttaattctag-tttttctgaaacttagtaattccaagttgttttttatgtaattcaagaagaaatcatgaaaatcgacaaagca 300  Q
      ||||||||| |||||| ||||| ||| ||||| | | || |||| |||||||||||||| |||||||| |||||| |||||||    
T  27912025 --taattctagttttttcggaaacatagcaattctagggtg-ttttgatgtaattcaagaaaaaatcatgcaaatcggcaaagca 27911944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 118 - 233
Target Start/End: Complemental strand, 10828574 - 10828459
Alignment:
Q  118 tttcagtcatttttatttagttttaattcaagataaaggagttttagaaaaactgcatatggttttcagaacattttgtaatgttttcatttcgagtcat 217  Q
    |||||||||||||  || |||||| ||||||  ||  |||||||||||| || ||||||||||||  || ||||||||||||||||||||||||||||||    
T  10828574 tttcagtcattttacttaagtttttattcaaattattggagttttagaacaattgcatatggtttaaaggacattttgtaatgttttcatttcgagtcat 10828475  T
Q  218 ttaattctagtttttc 233  Q
      ||||| ||||||||    
T  10828474 gcaattcaagtttttc 10828459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 125 - 300
Target Start/End: Original strand, 31260668 - 31260844
Alignment:
Q  125 catttttatttag-ttttaattcaagataaaggagttttagaaaaactgcatatggttttc-agaacattttgtaatgttttcatttcgagtcatttaat 222  Q
    ||||||||||||  |||| || ||||||| ||||||||||||  || ||| |||  ||||| ||||||||||||||||||||||| |||| |||| ||||    
T  31260668 catttttatttaaattttgatccaagatagaggagttttagagcaattgcctatttttttccagaacattttgtaatgttttcatatcgattcatgtaat 31260767  T
Q  223 tctagtttttctgaaacttagtaattccaagttgttttttatgtaattcaagaagaaatcatgaaaatcgacaaagca 300  Q
    | ||||||| |  |||| ||  ||||  ||| || |||| |||||||| |||||||||||||| ||| ||||||||||    
T  31260768 tatagttttcccaaaacatatcaattttaaggtg-ttttgatgtaatttaagaagaaatcatgcaaaacgacaaagca 31260844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 118 - 231
Target Start/End: Complemental strand, 34104979 - 34104866
Alignment:
Q  118 tttcagtcatttttatttagttttaattcaagataaaggagttttagaaaaactgcatatggttttcagaacattttgtaatgttttcatttcgagtcat 217  Q
    ||||| ||||||||||||| |||| || |||| ||  ||| || || || || ||||| ||||||||||||||||||||||| ||||||||| |||||||    
T  34104979 tttcaatcatttttatttaattttgatccaagttaggggaattataaaacaattgcatgtggttttcagaacattttgtaatattttcattttgagtcat 34104880  T
Q  218 ttaattctagtttt 231  Q
      ||||||||||||    
T  34104879 gcaattctagtttt 34104866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 159 - 231
Target Start/End: Original strand, 21448734 - 21448806
Alignment:
Q  159 ttttagaaaaactgcatatggttttcagaacattttgtaatgttttcatttcgagtcatttaattctagtttt 231  Q
    |||||||| || ||| |||| ||||| | |||||||||||||||||||||| ||||||| |||||||||||||    
T  21448734 ttttagaacaattgcctatgattttcgggacattttgtaatgttttcattttgagtcatgtaattctagtttt 21448806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 232
Target Start/End: Original strand, 21536942 - 21537056
Alignment:
Q  118 tttcagtcatttttatttagttttaattcaagataaaggagttttagaaaaactgcatatggttttcagaacattttgtaatgttttcatttcgagtcat 217  Q
    ||||||||||||||| |||||||| || |||  || |||||||||| || || ||| | || ||||  | ||||||||| || |||| |||| |||||||    
T  21536942 tttcagtcatttttagttagttttgatccaaattataggagttttaaaacaattgcctgtgatttttgggacattttgtgatctttttattttgagtcat 21537041  T
Q  218 ttaattctagttttt 232  Q
     ||||||||||||||    
T  21537042 gtaattctagttttt 21537056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 300
Target Start/End: Complemental strand, 35133835 - 35133763
Alignment:
Q  228 tttttctgaaacttagtaattccaagttgttttttatgtaattcaagaagaaatcatgaaaatcgacaaagca 300  Q
    |||||||||||| ||| ||||  | | |||| || |||||||||| ||||||||||||||||||  |||||||    
T  35133835 tttttctgaaacatagcaattttagggtgttcttgatgtaattcacgaagaaatcatgaaaatcagcaaagca 35133763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 118 - 298
Target Start/End: Original strand, 63984 - 64164
Alignment:
Q  118 tttcagtcatttttatttagttttaattcaagataaaggagttttagaaaaactgcatatggttttcagaacattttgtaatgttttcatttcgagtcat 217  Q
    |||||||||||||||||||||||| || |||  || ||||||||||||| || ||  | |||||||  | ||||||| |||||||||| |||||||||||    
T  63984 tttcagtcatttttatttagttttgatccaaattagaggagttttagaacaattgtctttggtttttgggacattttataatgttttcttttcgagtcat 64083  T
Q  218 ttaattctagtttttctgaaacttagtaattccaagttgttttttatgtaattcaagaagaaatcatgaaaatcgacaaag 298  Q
     || |||||||||| |  ||||  || | ||||| | |||||||  ||||| ||||| | |||||||| ||||||||||||    
T  64084 gtatttctagttttcccaaaaccaagcagttccagggtgtttttgctgtaactcaaggaaaaatcatgcaaatcgacaaag 64164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 122 - 299
Target Start/End: Complemental strand, 28280339 - 28280162
Alignment:
Q  122 agtcatttttatttagttttaattcaagataaaggagttttagaaaaactgcatatggttttcagaacattttgtaatgttttcatttcgagtcatttaa 221  Q
    ||||||||||||||||||||||| ||| ||| |||||| |||||| || ||  |||||||||  | |||||||||||||||||   || |||| || |||    
T  28280339 agtcatttttatttagttttaatccaaaatagaggagtattagaacaattgtctatggtttttgggacattttgtaatgttttatatttgagttatgtaa 28280240  T
Q  222 ttctagtttttct-gaaacttagtaattccaagttgttttttatgtaattcaagaagaaatcatgaaaatcgacaaagc 299  Q
    || |||||||||| ||||| ||  ||||| |   || |||| ||||||||||||||||||||||| |||||| ||||||    
T  28280239 ttatagtttttctagaaacataacaattctagagtg-ttttgatgtaattcaagaagaaatcatgcaaatcggcaaagc 28280162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 118 - 231
Target Start/End: Original strand, 32415866 - 32415979
Alignment:
Q  118 tttcagtcatttttatttagttttaattcaagataaaggagttttagaaaaactgcatatggttttcagaacattttgtaatgttttcatttcgagtcat 217  Q
    ||||||| ||||||||| || ||| || |||| || ||||||||||||| || | | |||||||||  | ||||||||||||||||||||||| ||||||    
T  32415866 tttcagtaatttttattcagcttttatccaagttacaggagttttagaacaatttcctatggtttttgggacattttgtaatgttttcatttcaagtcat 32415965  T
Q  218 ttaattctagtttt 231  Q
     |||||||||||||    
T  32415966 gtaattctagtttt 32415979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 128 - 273
Target Start/End: Complemental strand, 20680631 - 20680485
Alignment:
Q  128 ttttatttag-ttttaattcaagataaaggagttttagaaaaactgcatatggttttcagaacattttgtaatgttttcatttcgagtcatttaattcta 226  Q
    |||||||||| ||||||| |||  || |||| ||||||||||| ||| |||  ||||| | | |||||||||| |||| |||||||||||| |||| ||     
T  20680631 ttttatttagattttaatccaatttagaggaattttagaaaaattgcctatctttttcgggatattttgtaatttttttatttcgagtcatgtaatcctt 20680532  T
Q  227 gtttttctgaaacttagtaattccaagttgttttttatgtaattcaa 273  Q
    ||||||| |||||   ||| ||| ||| ||||||| |||||||||||    
T  20680531 gtttttcggaaacaatgtagttctaaggtgtttttgatgtaattcaa 20680485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 118 - 233
Target Start/End: Complemental strand, 23032726 - 23032611
Alignment:
Q  118 tttcagtcatttttatttagttttaattcaagataaaggagttttagaaaaactgcatatggttttcagaacattttgtaatgttttcatttcgagtcat 217  Q
    ||||| |||||||||||||||||| ||  ||  || ||||||||||||  || ||  ||||||||||   ||||||||||||  ||||||||| | ||||    
T  23032726 tttcaatcatttttatttagttttgatctaaactagaggagttttagagcaattgactatggttttcgagacattttgtaattctttcatttcaattcat 23032627  T
Q  218 ttaattctagtttttc 233  Q
     |||||||||||||||    
T  23032626 gtaattctagtttttc 23032611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 255 - 300
Target Start/End: Complemental strand, 15520899 - 15520854
Alignment:
Q  255 tgttttttatgtaattcaagaagaaatcatgaaaatcgacaaagca 300  Q
    ||||||| ||||||||||||||||||||||| |||||| |||||||    
T  15520899 tgtttttgatgtaattcaagaagaaatcatgcaaatcggcaaagca 15520854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 233
Target Start/End: Original strand, 20102969 - 20103043
Alignment:
Q  159 ttttagaaaaactgcatatggttttcagaacattttgtaatgttttcatttcgagtcatttaattctagtttttc 233  Q
    |||||||| || | ||||||||||   | |||||| ||||||||||||| || |||||| |||||||||||||||    
T  20102969 ttttagaacaatttcatatggtttaagggacatttcgtaatgttttcatatccagtcatgtaattctagtttttc 20103043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 300
Target Start/End: Complemental strand, 18939436 - 18939399
Alignment:
Q  263 atgtaattcaagaagaaatcatgaaaatcgacaaagca 300  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  18939436 atgtaattcacgaagaaatcatgcaaatcgacaaagca 18939399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 26456106 - 26456045
Alignment:
Q  188 acattttgtaatgttttcatttcgagtcatttaattctagtttttctgaaacttagtaattc 249  Q
    |||||||||||||||||||| | |||| || |||||| |||||| |||||||| || |||||    
T  26456106 acattttgtaatgttttcatattgagttatgtaattcaagttttcctgaaactaagcaattc 26456045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 118 - 217
Target Start/End: Complemental strand, 42153695 - 42153596
Alignment:
Q  118 tttcagtcatttttatttagttttaattcaagataaaggagttttagaaaaactgcatatggttttcagaacattttgtaatgttttcatttcgagtcat 217  Q
    ||||||||||||||||||||||||  | |||  || | ||||||||||| || ||| |||||||||| | ||||||| ||||||||||||||||||||||    
T  42153695 tttcagtcatttttatttagttttgttccaaattatatgagttttagaacaattgcctatggttttcgggacattttctaatgttttcatttcgagtcat 42153596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 290
Target Start/End: Original strand, 16042699 - 16042868
Alignment:
Q  118 tttcagtcatttttatttagttttaattcaagataaaggagttttagaaaaactgcatatggttttcagaacattttgtaatgttttcatttcgagtcat 217  Q
    ||||| ||||||||||||| |||| || ||| ||| || || ||||||  || | | ||| |||||| | | |||||||||||||||||||||||||||     
T  16042699 tttcaatcatttttatttaattttgatccaaaatagagaagctttagagcaattacctatagttttcgggatattttgtaatgttttcatttcgagtca- 16042797  T
Q  218 ttaattctagtttttctgaaacttagtaattccaagttgttttttatgtaattcaagaagaaatcatgaaaat 290  Q
      |||||||||||   |||||| ||| ||||  | | || |||| ||||||||||||||||||||||| ||||    
T  16042798 -aaattctagtttccttgaaacatagcaattttagggtg-ttttaatgtaattcaagaagaaatcatgcaaat 16042868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 255 - 300
Target Start/End: Original strand, 34579946 - 34579991
Alignment:
Q  255 tgttttttatgtaattcaagaagaaatcatgaaaatcgacaaagca 300  Q
    |||||||||||||||||| |||||||||||| |||||| |||||||    
T  34579946 tgttttttatgtaattcacgaagaaatcatgcaaatcggcaaagca 34579991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 255 - 300
Target Start/End: Original strand, 34585695 - 34585740
Alignment:
Q  255 tgttttttatgtaattcaagaagaaatcatgaaaatcgacaaagca 300  Q
    |||||||||||||||||| |||||||||||| |||||| |||||||    
T  34585695 tgttttttatgtaattcacgaagaaatcatgcaaatcggcaaagca 34585740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 190 - 225
Target Start/End: Original strand, 27747651 - 27747686
Alignment:
Q  190 attttgtaatgttttcatttcgagtcatttaattct 225  Q
    |||||||||||||||||||||||||||| |||||||    
T  27747651 attttgtaatgttttcatttcgagtcatataattct 27747686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 300
Target Start/End: Original strand, 8445646 - 8445691
Alignment:
Q  255 tgttttttatgtaattcaagaagaaatcatgaaaatcgacaaagca 300  Q
    ||||||| ||||||||||||||||||| ||| |||||| |||||||    
T  8445646 tgtttttgatgtaattcaagaagaaattatgcaaatcggcaaagca 8445691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 231
Target Start/End: Original strand, 19104003 - 19104080
Alignment:
Q  154 aggagttttagaaaaactgcatatggttttcagaacattttgtaatgttttcatttcgagtcatttaattctagtttt 231  Q
    |||| ||||||||||| | | |||| ||||  | ||||||||||||||||| ||||||||| || || ||||||||||    
T  19104003 aggaattttagaaaaattacttatgttttttgggacattttgtaatgtttttatttcgagttatgtatttctagtttt 19104080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 297
Target Start/End: Original strand, 32438788 - 32438895
Alignment:
Q  190 attttgtaatgttttc-atttcgagtcatttaattctagtttttctgaaacttagtaattccaagttgttttttatgtaattcaagaagaaatcatgaaa 288  Q
    |||||||||||||||| || | ||||||| ||| |||| |||| | ||||| ||| ||||| | | |||||   |||||||||| |||||||||||| ||    
T  32438788 attttgtaatgttttctatgttgagtcatgtaactctacttttcccgaaacatagcaattctagggtgtttaa-atgtaattcacgaagaaatcatgtaa 32438886  T
Q  289 atcgacaaa 297  Q
    |||||||||    
T  32438887 atcgacaaa 32438895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 8e-18; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 20404100 - 20404162
Alignment:
Q  170 ctgcatatggttttcagaacattttgtaatgttttcatttcgagtcatttaattctagttttt 232  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||| |||||    
T  20404100 ctgcatatggttttcaggacattttgtaatgatttcatttcgagtcatgtaattctaattttt 20404162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 188 - 273
Target Start/End: Complemental strand, 15551046 - 15550961
Alignment:
Q  188 acattttgtaatgttttcatttcgagtcatttaattctagtttttctgaaacttagtaattccaagttgttttttatgtaattcaa 273  Q
    |||| |||||||||||||||||| | |||| |||||||||||||||||||||  || |||||  || ||||||| |||||||||||    
T  15551046 acatattgtaatgttttcatttcaaatcatgtaattctagtttttctgaaaccaagcaattcttaggtgtttttgatgtaattcaa 15550961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 125 - 297
Target Start/End: Complemental strand, 9941536 - 9941364
Alignment:
Q  125 catttttatttagttttaattcaagataaaggagttttagaaaaactgcatatggttttcagaacattttgtaatgttttcatttcgagtcatttaattc 224  Q
    ||||||||||||||||  || ||| ||| | |||||| | || || ||| |||| || |  ||| ||||||||||||| |||||||||||||| |||||     
T  9941536 catttttatttagtttagatccaaaatagatgagtttaaaaacaattgcctatgattctgggaaaattttgtaatgttctcatttcgagtcatgtaatta 9941437  T
Q  225 tagtttttctgaaacttagtaattccaagttgttttttatgtaattcaagaagaaatcatgaaaatcgacaaa 297  Q
    || |||| | ||||| ||| || | || | |||||||||||| |||||||||| ||||||  |||||| ||||    
T  9941436 taattttcccgaaacctagcaaatacagggtgttttttatgtgattcaagaagcaatcatccaaatcggcaaa 9941364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 126 - 232
Target Start/End: Original strand, 34395402 - 34395507
Alignment:
Q  126 atttttatttagttttaattcaagataaaggagttttagaaaaactgcatatggttttcagaacattttgtaatgttttcatttcgagtcatttaattct 225  Q
    ||||||||||||||||||| ||| ||| |||||| |||||| || |||||||| ||||||| ||| |||||| |||||||  || |||||   |||||||    
T  34395402 atttttatttagttttaatccaaaatagaggagtattagaacaattgcatatgattttcaggaca-tttgtattgttttctatttgagtcggataattct 34395500  T
Q  226 agttttt 232  Q
    |||||||    
T  34395501 agttttt 34395507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 123 - 231
Target Start/End: Original strand, 12585860 - 12585967
Alignment:
Q  123 gtcatttttatttagttttaattcaagataaaggagttttagaaaaactgcatatggttttcagaacattttgtaatgttttcatttcgagtcatttaat 222  Q
    |||||||||||||| |||| || |||| || ||||||||||||| || | | |||  ||||| | ||||||| ||||||||||||||||||||||  |||    
T  12585860 gtcatttttattta-ttttgatccaagttagaggagttttagaagaatttcctatcattttcgggacattttttaatgttttcatttcgagtcatgcaat 12585958  T
Q  223 tctagtttt 231  Q
    ||| |||||    
T  12585959 tcttgtttt 12585967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 122 - 195
Target Start/End: Complemental strand, 20723643 - 20723570
Alignment:
Q  122 agtcatttttatttagttttaattcaagataaaggagttttagaaaaactgcatatggttttcagaacattttg 195  Q
    |||||||||||||||||||| || |||| || || |||||||||| || ||||||||||| |  ||||||||||    
T  20723643 agtcatttttatttagtttttatccaagttagagaagttttagaacaattgcatatggttgttggaacattttg 20723570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 300
Target Start/End: Original strand, 21079896 - 21079938
Alignment:
Q  258 tttttatgtaattcaagaagaaatcatgaaaatcgacaaagca 300  Q
    |||| ||||||||||||||||||||||| |||||| |||||||    
T  21079896 ttttgatgtaattcaagaagaaatcatgcaaatcggcaaagca 21079938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 231
Target Start/End: Original strand, 17358397 - 17358442
Alignment:
Q  186 gaacattttgtaatgttttcatttcgagtcatttaattctagtttt 231  Q
    ||||||| |||||||||||||| | ||||||| |||||||||||||    
T  17358397 gaacattctgtaatgttttcatattgagtcatgtaattctagtttt 17358442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 299
Target Start/End: Original strand, 22564730 - 22564766
Alignment:
Q  263 atgtaattcaagaagaaatcatgaaaatcgacaaagc 299  Q
    |||||||||| |||||||||||| |||||||||||||    
T  22564730 atgtaattcacgaagaaatcatgcaaatcgacaaagc 22564766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 260 - 292
Target Start/End: Original strand, 34395540 - 34395572
Alignment:
Q  260 tttatgtaattcaagaagaaatcatgaaaatcg 292  Q
    |||||||||||||||||||||||||| ||||||    
T  34395540 tttatgtaattcaagaagaaatcatgcaaatcg 34395572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0468 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 117 - 281
Target Start/End: Complemental strand, 2357 - 2192
Alignment:
Q  117 ctttcagtcatttttatttagttttaattcaagataaaggagttttagaaaaactgcatatggttttcagaacattttgtaatgttttcatttcgagtca 216  Q
    ||||| |||| |||||||||||||| || ||||||| || |||||||||| || ||   | | ||||  | | ||||| |||||||||||||||||||||    
T  2357 ctttcggtcacttttatttagttttgatccaagatagagaagttttagaacaattgtcaacgttttttgggatattttataatgttttcatttcgagtca 2258  T
Q  217 tttaattctagtttttctgaaacttagtaattcca-agttgttttttatgtaattcaagaagaaat 281  Q
    | ||||||||||||| || |||| ||| ||||| | |||  ||||| || ||||||||||||||||    
T  2257 tgtaattctagttttccttaaacatagcaattctagagtattttttgatataattcaagaagaaat 2192  T

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Target: scaffold0340 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 231
Target Start/End: Complemental strand, 16960 - 16883
Alignment:
Q  154 aggagttttagaaaaactgcatatggttttcagaacattttgtaatgttttcatttcgagtcatttaattctagtttt 231  Q
    |||||||||||||||  | | |||||||| ||| | ||||||||||||||||||||||| |||| |||||||| ||||    
T  16960 aggagttttagaaaattttcctatggtttgcaggatattttgtaatgttttcatttcgattcatgtaattctaatttt 16883  T

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