View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7745_low_30 (Length: 305)
Name: NF7745_low_30
Description: NF7745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7745_low_30 |
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Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 5 - 287
Target Start/End: Complemental strand, 34358332 - 34358051
Alignment:
| Q |
5 |
agtttggtgttccagtgatttttcacatcattatctgttcttcctggtaattgtgctgctataaaggaccacctgatgacnnnnnnntaaatatgattta |
104 |
Q |
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| T |
34358332 |
agtttagtgttccagtgatttttcacatcattatctgttcttcctggtaattgtgctgctataaaggaccacctgatgacaaaaaaataaatatgattta |
34358233 |
T |
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| Q |
105 |
tgcatattcatatacgaataacgcaaacagagaatacacaagatttgataacctgagttcggctaattttgtttatgtctacgactaattttacgttgaa |
204 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
34358232 |
tgcatattcatatacgaataacgcaaacagagaatatacaagatttgatcacc-gagtttggctaattttgtttatgtctacgactaattttacgttgaa |
34358134 |
T |
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| Q |
205 |
gtctctttgtattgttcaatctttgtgttacgtattacaacttatgtttaaatgctacggtttaatttacaagattatcttta |
287 |
Q |
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| T |
34358133 |
gtctctttgcattgttcaagctttgtgttacgtattactacttatgtttaaatgctacagttcaatttacaagattatcttta |
34358051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 281
Target Start/End: Original strand, 33832807 - 33832857
Alignment:
| Q |
231 |
gttacgtattacaacttatgtttaaatgctacggtttaatttacaagatta |
281 |
Q |
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| T |
33832807 |
gttacgtattacaatgtgtgtttaaatactacggtctaatttacaagatta |
33832857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 78
Target Start/End: Original strand, 40819436 - 40819509
Alignment:
| Q |
5 |
agtttggtgttccagtgatttttcacatcattatctgttcttcctggtaattgtgctgctataaaggaccacct |
78 |
Q |
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| T |
40819436 |
agttttgtgttccagtagtttttgatatcattatcagttcttcctggtaattgagcagctataattgaccacct |
40819509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 40254029 - 40254077
Alignment:
| Q |
31 |
atcattatctgttcttcctggtaattgtgctgctataaaggaccacctg |
79 |
Q |
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| T |
40254029 |
atcattatccgttcgtcctggtaattgcgctgctataatggaccacctg |
40254077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 66
Target Start/End: Original strand, 43560234 - 43560268
Alignment:
| Q |
32 |
tcattatctgttcttcctggtaattgtgctgctat |
66 |
Q |
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| T |
43560234 |
tcattatctgttctccctggtaattgtgctgctat |
43560268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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