View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7745_low_34 (Length: 292)

Name: NF7745_low_34
Description: NF7745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7745_low_34
NF7745_low_34
[»] chr8 (4 HSPs)
chr8 (61-223)||(8745944-8746106)
chr8 (70-177)||(30202251-30202358)
chr8 (66-216)||(4679481-4679631)
chr8 (222-264)||(8746139-8746181)
[»] chr1 (3 HSPs)
chr1 (55-223)||(39201623-39201791)
chr1 (18-64)||(39365533-39365579)
chr1 (222-271)||(39201825-39201875)
[»] chr2 (1 HSPs)
chr2 (61-213)||(21195197-21195349)
[»] chr6 (2 HSPs)
chr6 (66-180)||(7464948-7465062)
chr6 (60-195)||(21453941-21454077)
[»] chr3 (2 HSPs)
chr3 (70-176)||(8706815-8706921)
chr3 (70-176)||(9058702-9058808)
[»] chr4 (1 HSPs)
chr4 (70-197)||(48707428-48707555)
[»] chr7 (1 HSPs)
chr7 (94-216)||(38481106-38481228)
[»] chr5 (1 HSPs)
chr5 (61-131)||(5741994-5742064)


Alignment Details
Target: chr8 (Bit Score: 151; Significance: 6e-80; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 61 - 223
Target Start/End: Original strand, 8745944 - 8746106
Alignment:
Q  61 ctaatggtctgtttgtttcaattgatggaggaaggaaagattgtgagtggagagaaagaaagtggaaaggagagatttccatagtttggaataccatgga 160  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8745944 ctaatggtctgtttgtttcaactgatggaggaaggaaagattgtgagtggagagaaagaaagtggaaaggagagatttccatagtttggaataccatgga 8746043  T
Q  161 aagacataggaaagaagaatattgatggggcccacacctgaaattgtttccacgctagttaga 223  Q
    ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  8746044 aaggcataggaaagaagaatattgatggggcccacacttgaaattgtttccacgctagttaga 8746106  T

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Target: chr8; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 70 - 177
Target Start/End: Original strand, 30202251 - 30202358
Alignment:
Q  70 tgtttgtttcaattgatggaggaaggaaagattgtgagtggagagaaagaaagtggaaaggagagatttccatagtttggaataccatggaaagacatag 169  Q
    ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  30202251 tgtttgtttcaattgatagagggaggaaagattgtgagtggagagaaagaaagtggaaagaagaggtttccatagtttggaataccatggaaagacatag 30202350  T
Q  170 gaaagaag 177  Q
    ||||||||    
T  30202351 gaaagaag 30202358  T

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Target: chr8; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 66 - 216
Target Start/End: Original strand, 4679481 - 4679631
Alignment:
Q  66 ggtctgtttgtttcaattgatggaggaaggaaagattgtgagtggagagaaagaaagtggaaaggagagatttccatagtttggaataccatggaaagac 165  Q
    |||||||||||||||| |||| |||  |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||      
T  4679481 ggtctgtttgtttcaactgatagagtgaggaaagattctgagtggagagaaagaaagtggaaaggagaggtttccatagtttggaacaccatagaaaggt 4679580  T
Q  166 ataggaaagaagaat-attgatggggcccacacctgaaattgtttccacgct 216  Q
    |||||||||||| ||  ||||||||||||| || | ||||||||||| ||||    
T  4679581 ataggaaagaagcatctttgatggggcccaaacat-aaattgtttccgcgct 4679631  T

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Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 222 - 264
Target Start/End: Original strand, 8746139 - 8746181
Alignment:
Q  222 gaaaagtcataaacacccttgttttattacttttataaatgtt 264  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  8746139 gaaaagtcataaacacccttgttttattacttttataaatgtt 8746181  T

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Target: chr1 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 55 - 223
Target Start/End: Original strand, 39201623 - 39201791
Alignment:
Q  55 ttctccctaatggtctgtttgtttcaattgatggaggaaggaaagattgtgagtggagagaaagaaagtggaaaggagagatttccatagtttggaatac 154  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| || || ||||||||||||| ||||     
T  39201623 ttctccctaatggtctgtttgtttcaactgatgaaggaaggaaagattgtgagtggagagaaagaaagtggaaaagaaaggtttccatagtttgaaatat 39201722  T
Q  155 catggaaagacataggaaagaagaatattgatggggcccacacctgaaattgtttccacgctagttaga 223  Q
    ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||    
T  39201723 catagaaagacataggaaagaaggatattgatggggcccacacctgaaattgtttccgcactagttaga 39201791  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 39365579 - 39365533
Alignment:
Q  18 gcatgctagtttctgttttgacgttcttcacaatgtcttctccctaa 64  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  39365579 gcatgctagtttctgttttgacgttcttcacaatgtcttctccctaa 39365533  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 271
Target Start/End: Original strand, 39201825 - 39201875
Alignment:
Q  222 gaaaagtcataaacacccttgttttattacttttat-aaatgtttatcagc 271  Q
    |||| |||||||| |||||||||||||||||||||| ||||||||||||||    
T  39201825 gaaatgtcataaatacccttgttttattacttttataaaatgtttatcagc 39201875  T

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Target: chr2 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 61 - 213
Target Start/End: Original strand, 21195197 - 21195349
Alignment:
Q  61 ctaatggtctgtttgtttcaattgatggaggaaggaaagattgtgagtggagagaaagaaagtggaaaggagagatttccatagtttggaataccatgga 160  Q
    |||| |||||||||||||| | ||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||| ||||||||    
T  21195197 ctaagggtctgtttgtttctactgatggagggaggaaagattgtgaatggagagaaagaaagtggaaaggagaggtttccattgtttggaacaccatgga 21195296  T
Q  161 aagacataggaaagaagaat-attgatggggcccacacctgaaattgtttccac 213  Q
    ||||||||||||||||||||  ||||||||||||||| || |||||||||||||    
T  21195297 aagacataggaaagaagaatctttgatggggcccaca-ctaaaattgtttccac 21195349  T

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Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 66 - 180
Target Start/End: Original strand, 7464948 - 7465062
Alignment:
Q  66 ggtctgtttgtttcaattgatggaggaaggaaagattgtgagtggagagaaagaaagtggaaaggagagatttccatagtttggaataccatggaaagac 165  Q
    |||||||||||||  | ||||||||| ||||||||||| || |||||||||||||||||||||| |||| |||||||||||||||| ||||||||||| |    
T  7464948 ggtctgtttgtttttactgatggagggaggaaagattgcgaatggagagaaagaaagtggaaagaagaggtttccatagtttggaacaccatggaaaggc 7465047  T
Q  166 ataggaaagaagaat 180  Q
    |||||||||||||||    
T  7465048 ataggaaagaagaat 7465062  T

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Target: chr6; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 60 - 195
Target Start/End: Complemental strand, 21454077 - 21453941
Alignment:
Q  60 cctaatggtctgtttgtttcaattgatggaggaaggaaagattgtgagtggagagaaagaaagtggaaaggagagatttccatagtttggaataccatgg 159  Q
    ||||| ||| ||||| ||||||||||| || | |||||||||||||| |||||||||| ||||||||||| || | |||||||||||||||| ||||||     
T  21454077 cctaagggtttgtttttttcaattgatagaaggaggaaagattgtgactggagagaaataaagtggaaagaaggggtttccatagtttggaacaccatga 21453978  T
Q  160 aaagacataggaaagaagaat-attgatggggcccac 195  Q
    |||||||||||||||||| ||  ||||||||||||||    
T  21453977 aaagacataggaaagaagcatctttgatggggcccac 21453941  T

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Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 70 - 176
Target Start/End: Complemental strand, 8706921 - 8706815
Alignment:
Q  70 tgtttgtttcaattgatggaggaaggaaagattgtgagtggagagaaagaaagtggaaaggagagatttccatagtttggaataccatggaaagacatag 169  Q
    ||||||||||||||||| |||  ||||||||||||||||||||| ||||||||||||||| |||| |||| ||||||||||| ||||  ||||| |||||    
T  8706921 tgtttgtttcaattgatagagtgaggaaagattgtgagtggagaaaaagaaagtggaaagaagaggtttctatagtttggaacaccaaagaaaggcatag 8706822  T
Q  170 gaaagaa 176  Q
    |||||||    
T  8706821 gaaagaa 8706815  T

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Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 70 - 176
Target Start/End: Complemental strand, 9058808 - 9058702
Alignment:
Q  70 tgtttgtttcaattgatggaggaaggaaagattgtgagtggagagaaagaaagtggaaaggagagatttccatagtttggaataccatggaaagacatag 169  Q
    ||||||||||||||||| |||  ||||||||||||||||||||| ||||||||||||||| |||| |||| ||||||||||| ||||  ||||| |||||    
T  9058808 tgtttgtttcaattgatagagtgaggaaagattgtgagtggagaaaaagaaagtggaaagaagaggtttctatagtttggaacaccaaagaaaggcatag 9058709  T
Q  170 gaaagaa 176  Q
    |||||||    
T  9058708 gaaagaa 9058702  T

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Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 70 - 197
Target Start/End: Complemental strand, 48707555 - 48707428
Alignment:
Q  70 tgtttgtttcaattgatggaggaaggaaagattgtgagtggagagaaagaaagtggaaaggagagatttccatagtttggaataccatggaaagacatag 169  Q
    ||||||||| ||| ||| |||  ||||||||||||||| ||| | || |||| ||||||||| ||||||| || |||||||  | |||  ||||||||||    
T  48707555 tgtttgttttaatagatagagagaggaaagattgtgaggggacaaaatgaaactggaaaggaaagatttctattgtttggagcaacataaaaagacatag 48707456  T
Q  170 gaaagaagaatattgatggggcccacac 197  Q
    ||||||||||||||||||||||||||||    
T  48707455 gaaagaagaatattgatggggcccacac 48707428  T

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Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 94 - 216
Target Start/End: Complemental strand, 38481228 - 38481106
Alignment:
Q  94 ggaaagattgtgagtggagagaaagaaagtggaaaggagagatttccatagtttggaataccatggaaagacataggaaagaagaatattgatggggccc 193  Q
    |||||||||||||| ||||||||||| | ||||||||| || ||||||| |||||||  | |||  |||| ||| ||||||||| ||||||||||| |||    
T  38481228 ggaaagattgtgagaggagagaaagacaatggaaaggaaaggtttccattgtttggagcaacataaaaaggcatgggaaagaagcatattgatgggcccc 38481129  T
Q  194 acacctgaaattgtttccacgct 216  Q
    ||||   ||||||||||||||||    
T  38481128 acacacaaaattgtttccacgct 38481106  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 131
Target Start/End: Complemental strand, 5742064 - 5741994
Alignment:
Q  61 ctaatggtctgtttgtttcaattgatggaggaaggaaagattgtgagtggagagaaagaaagtggaaagga 131  Q
    |||||||| | |||||||||| ||||  |||  |||| ||| ||||| |||||||||||||||||||||||    
T  5742064 ctaatggtatatttgtttcaactgataaaggggggaaggatcgtgaggggagagaaagaaagtggaaagga 5741994  T

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