View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7745_low_37 (Length: 282)
Name: NF7745_low_37
Description: NF7745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7745_low_37 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 45 - 264
Target Start/End: Complemental strand, 39902319 - 39902102
Alignment:
| Q |
45 |
aagtgcttaaaaatcaaattctttttataactatgtcaacctatttgaactagatagtccattttcaaattttcatataactattgtcaatgttccttga |
144 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
39902319 |
aagtgcttaaaaatcaaattctttttataactatgtcaacctatttgaactagatagtccattttcaaattttcatataattattgtcaatgttccttga |
39902220 |
T |
|
| Q |
145 |
gacaatatattgatactggtagtgtcaattaagagtcgttctacagtgcagcgagacaatgtgcattatattattttatactggtaatatgtaactcaaa |
244 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39902219 |
gacaatatgttgatactggtagtgtcaattaagagtcgttctacagtgcagcgagacaatgtgcattatattattttatactggtaatatgtaactcaaa |
39902120 |
T |
|
| Q |
245 |
ggcttacacaatacacgaat |
264 |
Q |
| |
|
||||| ||||||||||||| |
|
|
| T |
39902119 |
ggctt--acaatacacgaat |
39902102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 217
Target Start/End: Original strand, 39901915 - 39901962
Alignment:
| Q |
170 |
caattaagagtcgttctacagtgcagcgagacaatgtgcattatatta |
217 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||||||| |||||| |
|
|
| T |
39901915 |
caattaagagtcgtcctacagtgcagcaagacaatgtgcatgatatta |
39901962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University