View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7745_low_39 (Length: 275)
Name: NF7745_low_39
Description: NF7745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7745_low_39 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-138; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 16 - 275
Target Start/End: Original strand, 35343722 - 35343981
Alignment:
| Q |
16 |
ataagcccaaaactatagacatcaacctttctcccataggattttcttttgatcttctcaggtgccatccaacggtaggtaccaaggtcgtcagcaagta |
115 |
Q |
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| T |
35343722 |
ataagcccaaaactatagacatcaacctttctcccataggattttctcttgatcatctcaggtgccatccaacggtaggtaccaaggtcgtcagcaagta |
35343821 |
T |
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| Q |
116 |
actcgcagtgtgcttcctcacaagcaatgccaaaatcagcaattttaaggtgaaagtcaccattaataaggacattctctggtttaaggtctcgatgaac |
215 |
Q |
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| T |
35343822 |
actcgcagtgtgcttcctcacaagcaatgccaaaatcagcaattttaaggtgaaagtcatcattaataaggacattctctggtttaaggtctcgatgaac |
35343921 |
T |
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| Q |
216 |
gacgccttgagagtgtatatattccattccacgagcaatatccaaagaaaaagcaattag |
275 |
Q |
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| T |
35343922 |
gacgccttgagagtgtatatattccattccacgagcaatatccaaagaaaaagcaattag |
35343981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 16 - 275
Target Start/End: Complemental strand, 35362234 - 35361975
Alignment:
| Q |
16 |
ataagcccaaaactatagacatcaacctttctcccataggattttcttttgatcttctcaggtgccatccaacggtaggtaccaaggtcgtcagcaagta |
115 |
Q |
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| T |
35362234 |
ataagcccaaaactatagacatcaacctttctcccataggattttctcttgatcatctcaggtgccatccaacggtaggtaccaaggtcgtcagcaagta |
35362135 |
T |
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| Q |
116 |
actcgcagtgtgcttcctcacaagcaatgccaaaatcagcaattttaaggtgaaagtcaccattaataaggacattctctggtttaaggtctcgatgaac |
215 |
Q |
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| T |
35362134 |
actcgcagtgtgcttcctcacaagcaatgccaaaatcagcaattttaaggtgaaagtcatcattaataaggacattctctggtttaaggtctcgatgaac |
35362035 |
T |
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| Q |
216 |
gacgccttgagagtgtatatattccattccacgagcaatatccaaagaaaaagcaattag |
275 |
Q |
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| T |
35362034 |
gacgccttgagagtgtatatattccattccacgagcaatatccaaagaaaaagcaattag |
35361975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 16 - 275
Target Start/End: Complemental strand, 35355586 - 35355327
Alignment:
| Q |
16 |
ataagcccaaaactatagacatcaacctttctcccataggattttcttttgatcttctcaggtgccatccaacggtaggtaccaaggtcgtcagcaagta |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||| | ||||| | |||||||||||||||||||| |||||| |||| |||||||||| |
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| T |
35355586 |
ataagcccaaaactatagacatcaacctttctcccataggactttcgtctgatcatttcaggtgccatccaacggtaagtaccagggtcatcagcaagta |
35355487 |
T |
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| Q |
116 |
actcgcagtgtgcttcctcacaagcaatgccaaaatcagcaattttaaggtgaaagtcaccattaataaggacattctctggtttaaggtctcgatgaac |
215 |
Q |
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| T |
35355486 |
agtcgcagtatgcttcctcacaggcaatgccaaaatcagcaattttaagatgagagtccccattaatgagaacattctctggtttaaggtctcgatgaat |
35355387 |
T |
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| Q |
216 |
gacgccttgagagtgtatatattccattccacgagcaatatccaaagaaaaagcaattag |
275 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
35355386 |
gacaccttgagagtgtatatattccattccacgagcaatatccagagaaaaagcaattag |
35355327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 16 - 274
Target Start/End: Complemental strand, 3820353 - 3820095
Alignment:
| Q |
16 |
ataagcccaaaactatagacatcaacctttctcccataggattttcttttgatcttctcaggtgccatccaacggtaggtaccaaggtcgtcagcaagta |
115 |
Q |
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|||||||||||||| || || ||||||||||||||||| ||||| | ||||||| | ||||||||||||||||||||||| ||| | || || || | || |
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| T |
3820353 |
ataagcccaaaactgtacacgtcaacctttctcccatatgatttccgtttgatcatttcaggtgccatccaacggtaggtgccaggatcatctgccaata |
3820254 |
T |
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| Q |
116 |
actcgcagtgtgcttcctcacaagcaatgccaaaatcagcaattttaaggtgaaagtcaccattaataaggacattctctggtttaaggtctcgatgaac |
215 |
Q |
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| || || ||| ||||||||||||||||| |||||||||| ||||||| ||||||| ||| ||| ||||||||||||||||||||||||| ||||| |
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| T |
3820253 |
agtcacatactgcctcctcacaagcaatgccgaaatcagcaagtttaaggcgaaagtcttcatcaatgaggacattctctggtttaaggtctctatgaat |
3820154 |
T |
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| Q |
216 |
gacgccttgagagtgtatatattccattccacgagcaatatccaaagaaaaagcaatta |
274 |
Q |
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||| |||||||||||||||||| |||||||||||| |||||| | || |||||| |||| |
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| T |
3820153 |
gacaccttgagagtgtatatatgccattccacgagaaatatcaagagcaaaagctatta |
3820095 |
T |
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