View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7745_low_41 (Length: 270)
Name: NF7745_low_41
Description: NF7745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7745_low_41 |
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| [»] scaffold0004 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 259
Target Start/End: Original strand, 22760427 - 22760668
Alignment:
| Q |
18 |
ataccaaactttagatatgtaaatataatggtttgatatgtaagcatgatatatgttagcacaaccacaagcatgaccataaatgacctagctaacagta |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
22760427 |
ataccaaactttagatatgtaaatataatggtttgatatgtaagcatgatatatgttaccacaaccacaagcatgaccataaatgacctagctaacagta |
22760526 |
T |
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| Q |
118 |
catgtatgtgaaaggtggtttaataagttctaacttttatagaccaaaaaggactaaggattgcctccataagtactgtcatggtccaagaaagcaatgc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||| |
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| T |
22760527 |
catgtatgtgaaaggtggtttaataagttctaacttttatagaccaaaaaggactaaggattgcctccgtaagtactggcatggtccaagaaaccaatgc |
22760626 |
T |
|
| Q |
218 |
agcatgacagattaatgctcatatggatcctaaacctaaagt |
259 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
22760627 |
agcatgacagattaatgctcatatggatcctaaacctaaagt |
22760668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 86 - 259
Target Start/End: Original strand, 48408565 - 48408738
Alignment:
| Q |
86 |
aagcatgaccataaatgacctagctaacagtacatgtatgtgaaaggtggtttaataagttctaacttttatagaccaaaaaggactaaggattgcctcc |
185 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||| |
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| T |
48408565 |
aagcatgactataaatgacctagctaacagtacatgtatgtgaaaggtggtttaataagttctaacttttaaagaccaagaaggactaaggaatgcctcg |
48408664 |
T |
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| Q |
186 |
ataagtactgtcatggtccaagaaagcaatgcagcatgacagattaatgctcatatggatcctaaacctaaagt |
259 |
Q |
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||| |||| |||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||| |
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| T |
48408665 |
gcaaggactgacatggtccaagaaaccaatgcagtatgacagattaaggctcatatggatcctaaacctaaagt |
48408738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 86 - 259
Target Start/End: Original strand, 48408026 - 48408199
Alignment:
| Q |
86 |
aagcatgaccataaatgacctagctaacagtacatgtatgtgaaaggtggtttaataagttctaacttttatagaccaaaaaggactaaggattgcctcc |
185 |
Q |
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||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||| |
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| T |
48408026 |
aagcatgactataaatgacctagctaacagtacatgcatgtgaaaggtggtttaataagttctaacttttaaagaccaagaaggactaaggaatgcctcg |
48408125 |
T |
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| Q |
186 |
ataagtactgtcatggtccaagaaagcaatgcagcatgacagattaatgctcatatggatcctaaacctaaagt |
259 |
Q |
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||| |||| |||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||| |
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| T |
48408126 |
gcaaggactgacatggtccaagaaaccaatgcagtatgacagattaaggctcatatggatcctaaacctaaagt |
48408199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 48407985 - 48408033
Alignment:
| Q |
18 |
ataccaaactttagatatgtaaatataatggtttgatatgtaagcatga |
66 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48407985 |
ataccaaactttagatatgtaaatataatggtttgatatgtaagcatga |
48408033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 48408524 - 48408572
Alignment:
| Q |
18 |
ataccaaactttagatatgtaaatataatggtttgatatgtaagcatga |
66 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48408524 |
ataccaaactttagatatgtaaatataatggtttgatatgtaagcatga |
48408572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 259
Target Start/End: Original strand, 42300167 - 42300408
Alignment:
| Q |
18 |
ataccaaactttagatatgtaaatataatggtttgatatgtaagcatgatatatgttagcacaaccacaagcatgaccataaatgacctagctaacagta |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42300167 |
ataccaaactttagatatgtaaatataatggtttgatatgcaagcatgatatatgttagcacaaccacaagcatgaccataaatgacctagctaacagta |
42300266 |
T |
|
| Q |
118 |
catgtatgtgaaaggtggtttaataagttctaacttttatagaccaaaaaggactaaggattgcctccataagtactgtcatggtccaagaaagcaatgc |
217 |
Q |
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||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||| |||||||| |||||||||||||| |||||| |
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| T |
42300267 |
catgtatgtgaaaggtggtttaataagttttaacttttaaagaccaaaaagaactaaggattgcctcagcaagtactgacatggtccaagaaaccaatgc |
42300366 |
T |
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| Q |
218 |
agcatgacagattaatgctcatatggatcctaaacctaaagt |
259 |
Q |
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|| |||||||||||| ||||||| ||||||||||| |||||| |
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| T |
42300367 |
agtatgacagattaaggctcataaggatcctaaacttaaagt |
42300408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 116 - 247
Target Start/End: Complemental strand, 18323034 - 18322903
Alignment:
| Q |
116 |
tacatgtatgtgaaaggtggtttaataagttctaacttttatagaccaaaaaggactaaggattgcctccataagtactgtcatggtccaagaaagcaat |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||| ||| |
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| T |
18323034 |
tacatgtatgtgaaaggtggtttaataagttctaacttttatagaccaaaaaggactaaggattgcctcgacaagtgctgtcatggtccaagaaacgaat |
18322935 |
T |
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| Q |
216 |
gcagcatgacagattaatgctcatatggatcc |
247 |
Q |
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|||||||| ||||||||||||||||||||||| |
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| T |
18322934 |
gcagcatgtcagattaatgctcatatggatcc |
18322903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 42827154 - 42826924
Alignment:
| Q |
19 |
taccaaactttagatatgtaaatataatggtttgatatgtaagcatgatatatgttagcacaaccacaagcatgaccataaatgacctagctaacagtac |
118 |
Q |
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|||||| | |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |
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| T |
42827154 |
taccaaccgttagatatgtaaatcaaatggtttgatatgtaagcatgatatatgttggcacaaccacctgcatgaccataaatgacctagctaacagtat |
42827055 |
T |
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| Q |
119 |
atgt---------atgtgaaaggtggtttaataagttctaacttttat----agaccaaaaaggactaaggattgcctccataagtactgtcatggtcca |
205 |
Q |
| |
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|||| |||||||| | | |||||||||||||||||||||| ||||||| ||||||||||| |||| ||||||||| |
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| T |
42827054 |
atgtagtaaaaaaatgtgaaaagggatttaataagttctaacttttatttaaagaccaagaaggactaagg---------------actgacatggtcca |
42826970 |
T |
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| Q |
206 |
agaaagcaatgcagcatgacagattaatgctcatatggatcctaaa |
251 |
Q |
| |
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||||| |||||| | |||||||||||| |||||||||||||||||| |
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| T |
42826969 |
agaaaccaatgccgtatgacagattaaggctcatatggatcctaaa |
42826924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 76412 - 76369
Alignment:
| Q |
18 |
ataccaaactttagatatgtaaatataatggtttgatatgtaag |
61 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
76412 |
ataccaaactttagatatgtaaatataatggtttcatatgtaag |
76369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 259
Target Start/End: Original strand, 28941938 - 28941983
Alignment:
| Q |
214 |
atgcagcatgacagattaatgctcatatggatcctaaacctaaagt |
259 |
Q |
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|||||| |||||||||||| | |||||||||||||||||||||||| |
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| T |
28941938 |
atgcagtatgacagattaaggttcatatggatcctaaacctaaagt |
28941983 |
T |
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