View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7745_low_47 (Length: 245)
Name: NF7745_low_47
Description: NF7745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7745_low_47 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 17 - 226
Target Start/End: Original strand, 3303600 - 3303809
Alignment:
| Q |
17 |
gaacaggaaaatctttcctaaaatattctgctactttcatatttctagtggtcacgatgattctacttcctttgttattactaattaaggcatgtttaat |
116 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3303600 |
gaacaggaaaatctttcgtaaaatattctgctactttcatatttctagtggtcacgatgattctacttcctttgttattactaattaaggcatgtttaat |
3303699 |
T |
|
| Q |
117 |
ctcatcagaaaatttttctttccaaacatcatcaaataaaaccaagtacctttttgtttcgaggtattgtcttacttgaataatcaatgttttgtcatcc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3303700 |
ctcatcagaaaatttttctttccaaacatcatcaaataaaaccaagtacctttttgtttcgaggtattgtcttacttgaataatcaatgttttgtcatcc |
3303799 |
T |
|
| Q |
217 |
atcttctgca |
226 |
Q |
| |
|
|||||||||| |
|
|
| T |
3303800 |
atcttctgca |
3303809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 17 - 222
Target Start/End: Original strand, 3357021 - 3357226
Alignment:
| Q |
17 |
gaacaggaaaatctttcctaaaatattctgctactttcatatttctagtggtcacgatgattctacttcctttgttattactaattaaggcatgtttaat |
116 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
3357021 |
gaacaggaaaagatttcttaaaatattctgctactttcatatttctagtggtcacgatgattctacttcctttgttattactaattaaggcatgttcaat |
3357120 |
T |
|
| Q |
117 |
ctcatcagaaaatttttctttccaaacatcatcaaataaaaccaagtacctttttgtttcgaggtattgtcttacttgaataatcaatgttttgtcatcc |
216 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||| |||||||| |
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| T |
3357121 |
ctcatcagaaaaattttcttcccaaacatcatcaaataaaaccaagtacctttttgactcaaggtattgtcttacttgagtaatcaatgttctgtcatcc |
3357220 |
T |
|
| Q |
217 |
atcttc |
222 |
Q |
| |
|
|||||| |
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|
| T |
3357221 |
atcttc |
3357226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 17 - 222
Target Start/End: Complemental strand, 3722027 - 3721822
Alignment:
| Q |
17 |
gaacaggaaaatctttcctaaaatattctgctactttcatatttctagtggtcacgatgattctacttcctttgttattactaattaaggcatgtttaat |
116 |
Q |
| |
|
||||||||||| |||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
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|
| T |
3722027 |
gaacaggaaaagatttcttaaaatattctgctacgttcatttttctagtggtcacgatgattctacttccttcgttattactaattaaggcatgttcaat |
3721928 |
T |
|
| Q |
117 |
ctcatcagaaaatttttctttccaaacatcatcaaataaaaccaagtacctttttgtttcgaggtattgtcttacttgaataatcaatgttttgtcatcc |
216 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||||||||||||||||| |
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|
| T |
3721927 |
ctcatcagaaaagttttcttcccaaacatcatcaaataaaaccaagtacctttttgactcgaggtattgtcttactcgagtaatcaatgttttgtcatcc |
3721828 |
T |
|
| Q |
217 |
atcttc |
222 |
Q |
| |
|
|||||| |
|
|
| T |
3721827 |
atcttc |
3721822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 30 - 222
Target Start/End: Original strand, 3310289 - 3310481
Alignment:
| Q |
30 |
tttcctaaaatattctgctactttcatatttctagtggtcacgatgattctacttcctttgttattactaattaaggcatgtttaatctcatcagaaaat |
129 |
Q |
| |
|
|||| ||||||||||| ||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
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|
| T |
3310289 |
tttcttaaaatattctactatattcatttttctagtggtcatgatgattctacttcctttgttattactaattaaggcatgtttaatttcatcaggaaat |
3310388 |
T |
|
| Q |
130 |
ttttctttccaaacatcatcaaataaaaccaagtacctttttgtttcgaggtattgtcttacttgaataatcaatgttttgtcatccatcttc |
222 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||| |||| || || | ||| ||||| ||| |||||||||| |||| |||||||||| |
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|
| T |
3310389 |
gcttctttccaaacatcatcaaacaaaagcaagtacctctttgattgaagatgttgccttacatgagtaatcaatgtgttgttatccatcttc |
3310481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 17 - 221
Target Start/End: Original strand, 3321875 - 3322079
Alignment:
| Q |
17 |
gaacaggaaaatctttcctaaaatattctgctactttcatatttctagtggtcacgatgattctacttcctttgttattactaattaaggcatgtttaat |
116 |
Q |
| |
|
|||||| ||||| |||| ||||| || |||||||| ||| ||||| |||||||||||||||||||||||| ||||||| |||||||||||||| ||| |
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|
| T |
3321875 |
gaacagaaaaatatttcttaaaactttttgctacttgcatgtttcttgtggtcacgatgattctacttcctgtgttattgctaattaaggcatgcgcaat |
3321974 |
T |
|
| Q |
117 |
ctcatcagaaaatttttctttccaaacatcatcaaataaaaccaagtacctttttgtttcgaggtattgtcttacttgaataatcaatgttttgtcatcc |
216 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| || ||||||||||| ||| ||| |||||| |||| |||||| |||| |||| || ||||||| |
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|
| T |
3321975 |
ctcatcagaaaatttttcttcccaaacatcatcaaaaaacaccaagtacctccttgattcaaggtatcgtctcacttgattaatgaatgcttcgtcatcc |
3322074 |
T |
|
| Q |
217 |
atctt |
221 |
Q |
| |
|
||||| |
|
|
| T |
3322075 |
atctt |
3322079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 17 - 222
Target Start/End: Complemental strand, 3201427 - 3201222
Alignment:
| Q |
17 |
gaacaggaaaatctttcctaaaatattctgctactttcatatttctagtggtcacgatgattctacttcctttgttattactaattaaggcatgtttaat |
116 |
Q |
| |
|
||||| ||||| |||| |||||||||| ||||| | ||| ||||| ||||||| ||||||||||||||||||| ||||||||||||||||| || ||| |
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|
| T |
3201427 |
gaacaagaaaagatttcttaaaatattcagctacatgcatcattctactggtcacaatgattctacttcctttgtcattactaattaaggcatcttcaat |
3201328 |
T |
|
| Q |
117 |
ctcatcagaaaatttttctttccaaacatcatcaaataaaaccaagtacctttttgtttcgaggtattgtcttacttgaataatcaatgttttgtcatcc |
216 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |||| ||||||||| |||| || || | ||| ||||| ||| |||||||||| |||| |||| |
|
|
| T |
3201327 |
ctcatcagaaaaactttctttccaaacatcatcaaacaaaagcaagtacctctttgattgaagatgttgccttacatgagtaatcaatgtgttgttatcc |
3201228 |
T |
|
| Q |
217 |
atcttc |
222 |
Q |
| |
|
|||||| |
|
|
| T |
3201227 |
atcttc |
3201222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 30 - 226
Target Start/End: Original strand, 3221139 - 3221335
Alignment:
| Q |
30 |
tttcctaaaatattctgctactttcatatttctagtggtcacgatgattctacttcctttgttattactaattaaggcatgtttaatctcatcagaaaat |
129 |
Q |
| |
|
||||||||||||||| ||||||| ||| ||||||||||||| ||||||||||| ||||| |||||| || | |||| | |||||||||| |||| |
|
|
| T |
3221139 |
tttcctaaaatattcagctacttgcattgttctagtggtcacaatgattctactacctttcttattattagacatagcatttacaatctcatcacaaaaa |
3221238 |
T |
|
| Q |
130 |
ttttctttccaaacatcatcaaataaaaccaagtacctttttgtttcgaggtattgtcttacttgaataatcaatgttttgtcatccatcttctgca |
226 |
Q |
| |
|
|||||||||||||||||||||| || || ||||||||||||| ||| ||||||| ||| |||||| ||||||||| |||||||||||| ||||| |
|
|
| T |
3221239 |
atttctttccaaacatcatcaaaaaacactaagtacctttttgattcaaggtattctctcacttgagcaatcaatgtaatgtcatccatctcctgca |
3221335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 36 - 183
Target Start/End: Original strand, 3198027 - 3198174
Alignment:
| Q |
36 |
aaaatattctgctactttcatatttctagtggtcacgatgattctacttcctttgttattactaattaaggcatgtttaatctcatcagaaaatttttct |
135 |
Q |
| |
|
||||||||||||| | | ||| ||||||||||||| |||||||||||||| ||||||||||| | ||||||| || ||| | |||| ||||| |||| |
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|
| T |
3198027 |
aaaatattctgctgcatgcatcattctagtggtcacaatgattctacttccgttgttattacttaccaaggcatattcgatcccttcagcaaattcttct |
3198126 |
T |
|
| Q |
136 |
ttccaaacatcatcaaataaaaccaagtacctttttgtttcgaggtat |
183 |
Q |
| |
|
|||| |||||||||||| | | ||||||||| |||| ||| |||||| |
|
|
| T |
3198127 |
ttccgaacatcatcaaaccacatcaagtacctctttgattcaaggtat |
3198174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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