View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7745_low_54 (Length: 228)
Name: NF7745_low_54
Description: NF7745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7745_low_54 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 165; Significance: 2e-88; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 13617783 - 13618003
Alignment:
| Q |
1 |
ataaattggtacatcttccatacataattcccaataagaacaaaaaacattagcaagaaatatcatggtcatgtttcataattcctttgttaaaccatct |
100 |
Q |
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| T |
13617783 |
ataaattgttacatcttccatacataattcccattaagaacaaaa-acattagcaagaaatatcatggtcatgtttcataattcctttgttaaaccatct |
13617881 |
T |
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| Q |
101 |
ctaatagtgcttgcactatttttatgttttgctccatccttttgttcagagagaatagtccaagtacgtgatatttattcaaaacacttcttaaacccta |
200 |
Q |
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| T |
13617882 |
ctcatagtgcttgcac------tatattttgctccatccttttgttcagagagaatagtccaagtacgtgacatttgttcaaaacacttcttaaacccta |
13617975 |
T |
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| Q |
201 |
caaaatgtgccattattttaaactcaat |
228 |
Q |
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| T |
13617976 |
aaaaatgtgccatcattttaaactcaat |
13618003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 25167206 - 25167434
Alignment:
| Q |
1 |
ataaattggtacatcttccatacataattcccaataagaacaa-aaaacattagcaagaaatatcatggtcatgtttcataattcctttgttaaaccatc |
99 |
Q |
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| T |
25167206 |
ataaattgatgcaactttcatacataattcccatcaacaataagaaaacattagctagaaatatcatagtcatgtttcataactcctttgttaaaccctc |
25167305 |
T |
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| Q |
100 |
tctaatagtgcttgcactatttttatgttttgctccatccttttgttcagagagaatagtccaagtacgtgatatttattcaaaacacttcttaaaccct |
199 |
Q |
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| T |
25167306 |
tctcatagtgcttgcactatttctatgttttgttccatcctttggttcagatagaatagtccaagtacgtgatatttgttcaaaacaccacaaaaaccct |
25167405 |
T |
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| Q |
200 |
acaaaatgtgccattattttaaactcaat |
228 |
Q |
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| T |
25167406 |
cgtaactgtgtcattatcttaaactcaat |
25167434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 43 - 184
Target Start/End: Complemental strand, 25162138 - 25162000
Alignment:
| Q |
43 |
aaaaacattagcaagaaatatcatggtcatgtttcataattcctttgttaaaccatctctaatagtgcttgcactatttttatgttttgctccatccttt |
142 |
Q |
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| T |
25162138 |
aaaaatattagcaagaaatatcacgatcatggttcat---tcctttgctaaaccctccctcatagtgcttgcactatttctatgttttgttccatccttt |
25162042 |
T |
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| Q |
143 |
tgttcagagagaatagtccaagtacgtgatatttattcaaaa |
184 |
Q |
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| T |
25162041 |
tgttcagacagaatagtccaagtaactgaaatttgttcaaaa |
25162000 |
T |
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