View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7745_low_56 (Length: 206)
Name: NF7745_low_56
Description: NF7745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7745_low_56 |
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Alignment Details
Target: chr2 (Bit Score: 164; Significance: 7e-88; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 13 - 188
Target Start/End: Complemental strand, 1048099 - 1047924
Alignment:
| Q |
13 |
agtttggtggtgaagtggatattgggaacagaaagagatgttatttgtcgataatggtatcaaacttagaatagattgaataaggctgggaatgattact |
112 |
Q |
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| T |
1048099 |
agtttgatggtgaagtggatattgggaacagaaagagatgttatttgtcgataatggtatcaaacttagaatagattgaataaggctgggaatgattact |
1048000 |
T |
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| Q |
113 |
tcggagtgttactaccaagatatttctctttcagaaatgatatttgttgattatctctcaactcattgttaacatt |
188 |
Q |
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| T |
1047999 |
tcagagtgttactaccaagatatttctctttcagaaatgatatttgttgattatctcccaactcattgttaacatt |
1047924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 99 - 188
Target Start/End: Original strand, 1022609 - 1022698
Alignment:
| Q |
99 |
tgggaatgattacttcggagtgttactaccaagatatttctctttcagaaatgatatttgttgattatctctcaactcattgttaacatt |
188 |
Q |
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| T |
1022609 |
tgggaatgattacttcagagtgttactacctagacatttctctttcaaaaatgatatttgttgattatctctcaactcattgttaacatt |
1022698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 116 - 188
Target Start/End: Complemental strand, 40637659 - 40637589
Alignment:
| Q |
116 |
gagtgttactaccaagatatttctctttcagaaatgatatttgttgattatctctcaactcattgttaacatt |
188 |
Q |
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| T |
40637659 |
gagtgttactacctagacatttctctttcaaaaatgatatttgttgatta--tctcaactcattgttaacatt |
40637589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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