View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7745_low_7 (Length: 562)
Name: NF7745_low_7
Description: NF7745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7745_low_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 8 - 537
Target Start/End: Complemental strand, 43860954 - 43860426
Alignment:
| Q |
8 |
agtgagatgaatatctatggttgcgtttcaggggtgtgacgcatcggttttgttggagtccactgctggtaacacggcggagaaggatgccattcctaat |
107 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43860954 |
agtgacatgcatatctatggttgcgtttcaggggtgtgacgcatcggttttgttggagtccactgctggtaacacggcggagaaggatgccattcctaat |
43860855 |
T |
|
| Q |
108 |
ttatcattagcaggctttgatgtaatagaagacataaaagaagctttggaggaaaaatgtccaggaattgtttcatgtgctgatatactcacattggcta |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43860854 |
ttatcattagcaggctttgatgtaatagaagacataaaagaagctttggaggaaaaatgtccaggaattgtttcatgtgctgatatactcacattggcta |
43860755 |
T |
|
| Q |
208 |
ctagagatgctgttagtaatttatcaagctagctagagacgagtctatacatatttatgcatgtagcatcatattgattcattcatattttttattacag |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43860754 |
ctagagatgctgttagtaatttatcaagctagctagagacgagtctatacatatttatgcatgtagcatcatattgattcattcatattttttattacag |
43860655 |
T |
|
| Q |
308 |
tttaagaataaaccaaattgggaagtacttacgggtagaagagatggtactgtgtccagaagcattgaagccctaatcaatatcccggcacctttccata |
407 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43860654 |
tttaagaataaaccaaattgggaagtgcttacgggtagaagagatggtactgtgtccagaagcattgaagccctaatcaatatcccggcacctttccata |
43860555 |
T |
|
| Q |
408 |
acatcacacagctcagacaaatctttgctaataaaaagcttactcttcatgacttggttgtattatcaggtacgtttaattaagtctgttttcnnnnnnn |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
43860554 |
acatcacacagctcagacaaatctttgctaataaaaagcttactcttcatgacttggttgtattatcaggtacatttaattaagtctgttttc-aaaaaa |
43860456 |
T |
|
| Q |
508 |
ntccatgttaaaaataaacattatgcataa |
537 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
43860455 |
atccatgttaaaaataaacattatgcataa |
43860426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University