View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7745_low_8 (Length: 551)
Name: NF7745_low_8
Description: NF7745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7745_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 126 - 534
Target Start/End: Complemental strand, 50265480 - 50265072
Alignment:
| Q |
126 |
caagcatattaatgaaaatctcaagcatagttgcataaacatacctcaagagtcaagactcaagtaccttnnnnnnnnnnnnnnnnnnnnngataattaa |
225 |
Q |
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| T |
50265480 |
caagcatatcaatgaaaatctcaagcatagttgcataaacatacctcaagagtcaagactcaagtaccttaaaaaagccaaaagtaaaaaagataattaa |
50265381 |
T |
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| Q |
226 |
ggtcaaacataagcagttggcgaatgacatgtagtaacgtggctaatccaatgcacacattcatcatgttcattttgtttctatttgagtaacttaacag |
325 |
Q |
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| T |
50265380 |
ggtcaaacataagcagttggcgaatgacatgtagtaacgtggctaatccaatgcacacattcatcatgttcattttgtttctatttgagtaacttaacag |
50265281 |
T |
|
| Q |
326 |
cgacacacctaaaagtgggatgtaggaatgattaatttcacattgaataagattataagaatcagttaaacaaaagatatataaaagagatgattttata |
425 |
Q |
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| T |
50265280 |
cgacacacctaaaagtgggatgtaggaatgattaatttcacattgaataagattataagaatgagttaaacaaaagatatataaaagagatgattttata |
50265181 |
T |
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| Q |
426 |
ttcaatatttccaggttttaaatcaaaacataatgtttaagccgcttgtatggttgtttgtagtataataatatgaagacacttctctaccgttttaggc |
525 |
Q |
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| T |
50265180 |
ttcaatatttcaaggttttaaatcaaaatataatgtttaagccgcttgtatggttgtttgtagtataataatatgaagacacttctctaccgttttaggc |
50265081 |
T |
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| Q |
526 |
tctgcttgt |
534 |
Q |
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| T |
50265080 |
tctgcttgt |
50265072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 50265606 - 50265530
Alignment:
| Q |
1 |
ttgtggcttgcttgccttttattaatgtgtaattaatcattgatacataatagataaatatgcgtcccaattacact |
77 |
Q |
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| T |
50265606 |
ttgtggcttgcttgccttttattaatgtgtaattaatcattgatacataatagataaatatgcgtcccaattacact |
50265530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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