View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7746_high_10 (Length: 379)

Name: NF7746_high_10
Description: NF7746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7746_high_10
NF7746_high_10
[»] chr4 (5 HSPs)
chr4 (91-248)||(2464096-2464258)
chr4 (302-379)||(2463624-2463701)
chr4 (256-306)||(2463724-2463774)
chr4 (16-69)||(6736824-6736876)
chr4 (22-62)||(6736865-6736905)
[»] chr3 (9 HSPs)
chr3 (113-248)||(24207433-24207570)
chr3 (16-69)||(13468092-13468145)
chr3 (24-73)||(29897003-29897051)
chr3 (16-69)||(45227373-45227425)
chr3 (32-69)||(45227408-45227445)
chr3 (16-69)||(13468056-13468109)
chr3 (257-302)||(29914817-29914862)
chr3 (257-302)||(29963970-29964015)
chr3 (16-69)||(45227454-45227506)
[»] chr7 (13 HSPs)
chr7 (50-236)||(15695218-15695408)
chr7 (50-236)||(15702198-15702388)
chr7 (16-73)||(15687963-15688020)
chr7 (16-73)||(15695556-15695613)
chr7 (16-73)||(15702536-15702593)
chr7 (16-69)||(15695524-15695577)
chr7 (16-69)||(15702504-15702557)
chr7 (257-306)||(15694929-15694978)
chr7 (257-306)||(15701909-15701958)
chr7 (16-63)||(15687937-15687984)
chr7 (43-73)||(15687999-15688029)
chr7 (43-73)||(15695592-15695622)
chr7 (43-73)||(15702572-15702602)
[»] chr8 (7 HSPs)
chr8 (16-69)||(21541868-21541921)
chr8 (24-69)||(21541796-21541841)
chr8 (16-73)||(21541828-21541885)
chr8 (16-69)||(21541976-21542029)
chr8 (17-69)||(21542012-21542064)
chr8 (23-73)||(21541936-21541986)
chr8 (27-69)||(21541904-21541946)
[»] chr5 (5 HSPs)
chr5 (15-69)||(37369102-37369156)
chr5 (16-69)||(37369068-37369119)
chr5 (23-69)||(37369977-37370023)
chr5 (16-69)||(37369941-37369994)
chr5 (16-69)||(37369138-37369190)
[»] scaffold0312 (4 HSPs)
scaffold0312 (16-69)||(18704-18757)
scaffold0312 (16-79)||(18659-18721)
scaffold0312 (16-69)||(18740-18792)
scaffold0312 (16-69)||(18629-18686)
[»] chr6 (9 HSPs)
chr6 (16-69)||(33296217-33296270)
chr6 (22-73)||(29934743-29934793)
chr6 (22-69)||(29934782-29934828)
chr6 (16-63)||(33296189-33296234)
chr6 (22-69)||(29934852-29934898)
chr6 (24-69)||(27314006-27314051)
chr6 (22-69)||(27575836-27575883)
chr6 (22-69)||(29934817-29934863)
chr6 (27-69)||(29934698-29934739)
[»] chr2 (8 HSPs)
chr2 (24-69)||(11951355-11951400)
chr2 (16-69)||(45682244-45682297)
chr2 (22-73)||(2743628-2743678)
chr2 (22-69)||(2743702-2743748)
chr2 (22-69)||(2743597-2743643)
chr2 (22-69)||(2743667-2743713)
chr2 (22-69)||(2743737-2743783)
chr2 (16-65)||(45682213-45682261)
[»] chr1 (4 HSPs)
chr1 (16-69)||(411813-411866)
chr1 (16-79)||(411849-411911)
chr1 (16-69)||(411778-411830)
chr1 (16-69)||(411884-411941)
[»] scaffold0927 (1 HSPs)
scaffold0927 (16-69)||(3484-3537)


Alignment Details
Target: chr4 (Bit Score: 139; Significance: 1e-72; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 91 - 248
Target Start/End: Complemental strand, 2464258 - 2464096
Alignment:
Q  91 atactattatcgtttaattcac-----gcattaattttgatcacttcacttgctattcaagctctcatcacctagttacaatttcgtattgatttttatc 185  Q
    ||||||||||||||||||||||     ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  2464258 atactattatcgtttaattcacaggctgcattaattttgatcacttcacttgcttttcaagctctcatcacctagttacaatttcgtattgatttttatc 2464159  T
Q  186 atgtatgctagtaccagaaccttattactccttgaataaacaagcataaaagatagcattcta 248  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2464158 atgtatgctagtaccagaaccttattactccttgaataaacaagcataaaagatagcattcta 2464096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 302 - 379
Target Start/End: Complemental strand, 2463701 - 2463624
Alignment:
Q  302 tttcatacctcaaataataacttcatggatcttgttccactagttcatcttgtctctctcagtttgacagcctttcct 379  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  2463701 tttcatacctcaaataataacttcatggatcttgttccactagttcatcttgtctctctcagtttgactgcctttcct 2463624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 256 - 306
Target Start/End: Complemental strand, 2463774 - 2463724
Alignment:
Q  256 ctacccatattcccaattttcctaatttcaaacccaaacattaaaatttca 306  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  2463774 ctacccaaattcccaattttcctaatttcaaaccctaacattaaaatttca 2463724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 6736824 - 6736876
Alignment:
Q  16 attatttcttcgttgtggcgaacggagatataccacattatctcttcgttgtgg 69  Q
    ||||| |||||||||||||||||||| ||||| |||||| |||||| |||||||    
T  6736824 attatctcttcgttgtggcgaacggaaatatagcacatt-tctctttgttgtgg 6736876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 6736865 - 6736905
Alignment:
Q  22 tcttcgttgtggcgaacggagatataccacattatctcttc 62  Q
    |||| |||||||||||||||||||| ||||||||| |||||    
T  6736865 tctttgttgtggcgaacggagatatgccacattatttcttc 6736905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 113 - 248
Target Start/End: Original strand, 24207433 - 24207570
Alignment:
Q  113 gcattaattttgat-cacttcacttgctattcaagctctcatcacctagttacaatttcgtattgatttttatcatgtatgctagtaccagaaccttatt 211  Q
    |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||  |||||||||||    
T  24207433 gcattaattttgattcacttcacttgctattcaatctctcatcacctagttacaatttaatattgatttttatcatgtatgctagtattagaaccttatt 24207532  T
Q  212 actccttg-aataaacaagcataaaagatagcattcta 248  Q
    | | |||| |||||| ||||||||||||||||||||||    
T  24207533 atttcttgaaataaagaagcataaaagatagcattcta 24207570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 13468145 - 13468092
Alignment:
Q  16 attatttcttcgttgtggcgaacggagatataccacattatctcttcgttgtgg 69  Q
    ||||| ||||||||||| || ||| |||||||||||||||||||||||||||||    
T  13468145 attatctcttcgttgtgacggacgaagatataccacattatctcttcgttgtgg 13468092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 29897003 - 29897051
Alignment:
Q  24 ttcgttgtggcgaacggagatataccacattatctcttcgttgtggtgaa 73  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  29897003 ttcgttgtggcgaacagagatataccacatt-tctcttcgttgtggtgaa 29897051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 45227425 - 45227373
Alignment:
Q  16 attatttcttcgttgtggcgaacggagatataccacattatctcttcgttgtgg 69  Q
    ||||| ||||||||||||||||||||||||||||||||| | ||||||||||||    
T  45227425 attatctcttcgttgtggcgaacggagatataccacatt-tatcttcgttgtgg 45227373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 69
Target Start/End: Complemental strand, 45227445 - 45227408
Alignment:
Q  32 ggcgaacggagatataccacattatctcttcgttgtgg 69  Q
    ||||||||||||||||||||||||||||||||||||||    
T  45227445 ggcgaacggagatataccacattatctcttcgttgtgg 45227408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 13468109 - 13468056
Alignment:
Q  16 attatttcttcgttgtggcgaacggagatataccacattatctcttcgttgtgg 69  Q
    ||||| ||||||||||||||||| ||||| ||| |||||||||||||| |||||    
T  13468109 attatctcttcgttgtggcgaaccgagatgtacaacattatctcttcgctgtgg 13468056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 257 - 302
Target Start/End: Original strand, 29914817 - 29914862
Alignment:
Q  257 tacccatattcccaattttcctaatttcaaacccaaacattaaaat 302  Q
    |||||| ||| ||||||||||||||||||||||| |||||||||||    
T  29914817 tacccaaatttccaattttcctaatttcaaaccctaacattaaaat 29914862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 257 - 302
Target Start/End: Original strand, 29963970 - 29964015
Alignment:
Q  257 tacccatattcccaattttcctaatttcaaacccaaacattaaaat 302  Q
    |||||| ||| ||||||||||||||||||||||| |||||||||||    
T  29963970 tacccaaatttccaattttcctaatttcaaaccctaacattaaaat 29964015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 45227506 - 45227454
Alignment:
Q  16 attatttcttcgttgtggcgaacggagatataccacattatctcttcgttgtgg 69  Q
    ||||| |||||||||||| ||||||||||||| |||||| |||||| |||||||    
T  45227506 attatctcttcgttgtggtgaacggagatatatcacatt-tctctttgttgtgg 45227454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 50 - 236
Target Start/End: Complemental strand, 15695408 - 15695218
Alignment:
Q  50 acattatctcttcgttgtggtgaatggacgtcaattttaaaatactattatcgtttaattcac-----gcattaattttgatcacttcacttgctattca 144  Q
    |||||||||||||||||||| ||| |||  | |||||||||||||||| | | |||||||||      ||||||| |||||||||||||||| |||||||    
T  15695408 acattatctcttcgttgtggagaacggatattaattttaaaatactatgaacatttaattcataggctgcattaactttgatcacttcacttactattca 15695309  T
Q  145 agctctcatcacctagttacaatttcgtattgatttttatcatgtatgctagtaccagaaccttattactccttgaataaacaagcataaaa 236  Q
    | ||||||||||||||||||| |||| |||||| ||||| ||||||||||||||  ||||| |||| ||||| ||||||||| |||||||||    
T  15695308 atctctcatcacctagttacattttcatattgacttttagcatgtatgctagta-tagaacattataactccctgaataaacgagcataaaa 15695218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 50 - 236
Target Start/End: Complemental strand, 15702388 - 15702198
Alignment:
Q  50 acattatctcttcgttgtggtgaatggacgtcaattttaaaatactattatcgtttaattcac-----gcattaattttgatcacttcacttgctattca 144  Q
    |||||||||||||||||||| ||| |||  | |||||||||||||||| | | |||||||||      ||||||| |||||||||||||||| |||||||    
T  15702388 acattatctcttcgttgtggagaacggatattaattttaaaatactatgaacatttaattcataggctgcattaactttgatcacttcacttactattca 15702289  T
Q  145 agctctcatcacctagttacaatttcgtattgatttttatcatgtatgctagtaccagaaccttattactccttgaataaacaagcataaaa 236  Q
    | ||||||||||||||||||| |||| |||||| ||||| ||||||||||||||  ||||| |||| ||||| ||||||||| |||||||||    
T  15702288 atctctcatcacctagttacattttcatattgacttttagcatgtatgctagta-tagaacattataactccctgaataaacgagcataaaa 15702198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 15688020 - 15687963
Alignment:
Q  16 attatttcttcgttgtggcgaacggagatataccacattatctcttcgttgtggtgaa 73  Q
    ||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  15688020 attatctcttcgttgtggtgaacggagatataccacattatctcatcgttgtggtgaa 15687963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 15695613 - 15695556
Alignment:
Q  16 attatttcttcgttgtggcgaacggagatataccacattatctcttcgttgtggtgaa 73  Q
    ||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  15695613 attatctcttcgttgtggtgaacggagatataccacattatctcatcgttgtggtgaa 15695556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 15702593 - 15702536
Alignment:
Q  16 attatttcttcgttgtggcgaacggagatataccacattatctcttcgttgtggtgaa 73  Q
    ||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  15702593 attatctcttcgttgtggtgaacggagatataccacattatctcatcgttgtggtgaa 15702536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 15695577 - 15695524
Alignment:
Q  16 attatttcttcgttgtggcgaacggagatataccacattatctcttcgttgtgg 69  Q
    ||||| || ||||||||| ||||||| |||||||||||||||||||||||||||    
T  15695577 attatctcatcgttgtggtgaacggaaatataccacattatctcttcgttgtgg 15695524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 15702557 - 15702504
Alignment:
Q  16 attatttcttcgttgtggcgaacggagatataccacattatctcttcgttgtgg 69  Q
    ||||| || ||||||||| ||||||| |||||||||||||||||||||||||||    
T  15702557 attatctcatcgttgtggtgaacggaaatataccacattatctcttcgttgtgg 15702504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 257 - 306
Target Start/End: Complemental strand, 15694978 - 15694929
Alignment:
Q  257 tacccatattcccaattttcctaatttcaaacccaaacattaaaatttca 306  Q
    |||||| |||| |||||||||||||||||||||| ||| |||||||||||    
T  15694978 tacccaaattctcaattttcctaatttcaaaccctaactttaaaatttca 15694929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 257 - 306
Target Start/End: Complemental strand, 15701958 - 15701909
Alignment:
Q  257 tacccatattcccaattttcctaatttcaaacccaaacattaaaatttca 306  Q
    |||||| |||| |||||||||||||||||||||| ||| |||||||||||    
T  15701958 tacccaaattctcaattttcctaatttcaaaccctaactttaaaatttca 15701909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 15687984 - 15687937
Alignment:
Q  16 attatttcttcgttgtggcgaacggagatataccacattatctcttcg 63  Q
    ||||| || ||||||||| ||||||| |||||||||||||||||||||    
T  15687984 attatctcatcgttgtggtgaacggaaatataccacattatctcttcg 15687937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 73
Target Start/End: Complemental strand, 15688029 - 15687999
Alignment:
Q  43 atataccacattatctcttcgttgtggtgaa 73  Q
    |||||||||||||||||||||||||||||||    
T  15688029 atataccacattatctcttcgttgtggtgaa 15687999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 73
Target Start/End: Complemental strand, 15695622 - 15695592
Alignment:
Q  43 atataccacattatctcttcgttgtggtgaa 73  Q
    |||||||||||||||||||||||||||||||    
T  15695622 atataccacattatctcttcgttgtggtgaa 15695592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 73
Target Start/End: Complemental strand, 15702602 - 15702572
Alignment:
Q  43 atataccacattatctcttcgttgtggtgaa 73  Q
    |||||||||||||||||||||||||||||||    
T  15702602 atataccacattatctcttcgttgtggtgaa 15702572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 21541921 - 21541868
Alignment:
Q  16 attatttcttcgttgtggcgaacggagatataccacattatctcttcgttgtgg 69  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  21541921 attatctcttcgttgtggcgaacggaggtataccacattatctcttcgttgtgg 21541868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 21541841 - 21541796
Alignment:
Q  24 ttcgttgtggcgaacggagatataccacattatctcttcgttgtgg 69  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||    
T  21541841 ttcgttgtggtgaacggatatataccacattatctcttcgttgtgg 21541796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 21541885 - 21541828
Alignment:
Q  16 attatttcttcgttgtggcgaacggagatataccacattatctcttcgttgtggtgaa 73  Q
    ||||| |||||||||||||||||  | |||||||||||||||| ||||||||||||||    
T  21541885 attatctcttcgttgtggcgaacataaatataccacattatcttttcgttgtggtgaa 21541828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 21542029 - 21541976
Alignment:
Q  16 attatttcttcgttgtggcgaacggagatataccacattatctcttcgttgtgg 69  Q
    ||||| ||||||||||||||||| ||| |||||||||||||| |||||||||||    
T  21542029 attatctcttcgttgtggcgaacagaggtataccacattatcccttcgttgtgg 21541976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 21542064 - 21542012
Alignment:
Q  17 ttatttcttcgttgtggcgaacggagatataccacattatctcttcgttgtgg 69  Q
    |||| ||||| ||||||||||||  ||||||||||||||||||||||||||||    
T  21542064 ttatctcttcattgtggcgaacgaggatataccacattatctcttcgttgtgg 21542012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 21541986 - 21541936
Alignment:
Q  23 cttcgttgtggcgaacggagatataccacattatctcttcgttgtggtgaa 73  Q
    ||||||||||||||||||| ||||| |||||||||| || |||||||||||    
T  21541986 cttcgttgtggcgaacggaaatatatcacattatctttttgttgtggtgaa 21541936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 69
Target Start/End: Complemental strand, 21541946 - 21541904
Alignment:
Q  27 gttgtggcgaacggagatataccacattatctcttcgttgtgg 69  Q
    ||||||| ||||||| |||||||| ||||||||||||||||||    
T  21541946 gttgtggtgaacggatatataccatattatctcttcgttgtgg 21541904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 37369156 - 37369102
Alignment:
Q  15 aattatttcttcgttgtggcgaacggagatataccacattatctcttcgttgtgg 69  Q
    |||||| |||| ||||||||||||||| |||||||||||||||||||||||||||    
T  37369156 aattatctctttgttgtggcgaacggaaatataccacattatctcttcgttgtgg 37369102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 37369119 - 37369068
Alignment:
Q  16 attatttcttcgttgtggcgaacggagatataccacattatctcttcgttgtgg 69  Q
    ||||| ||||||||||||||||||||  ||||||||||||||||||||||||||    
T  37369119 attatctcttcgttgtggcgaacgga--tataccacattatctcttcgttgtgg 37369068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 37370023 - 37369977
Alignment:
Q  23 cttcgttgtggcgaacggagatataccacattatctcttcgttgtgg 69  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||    
T  37370023 cttcgttgtggcaaacagagatataccacattatctcttcgttgtgg 37369977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 37369994 - 37369941
Alignment:
Q  16 attatttcttcgttgtggcgaacggagatataccacattatctcttcgttgtgg 69  Q
    ||||| |||||||||||||||||||| ||||  |||||||||||||||||||||    
T  37369994 attatctcttcgttgtggcgaacggaaatatgtcacattatctcttcgttgtgg 37369941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 37369190 - 37369138
Alignment:
Q  16 attatttcttcgttgtggcgaacggagatataccacattatctcttcgttgtgg 69  Q
    ||||| |||||||||||||||||||| |||||||| |||||||||| |||||||    
T  37369190 attatctcttcgttgtggcgaacgga-atataccaaattatctctttgttgtgg 37369138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 4)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 18757 - 18704
Alignment:
Q  16 attatttcttcgttgtggcgaacggagatataccacattatctcttcgttgtgg 69  Q
    ||||| |||||||||||||||||||||||  |||||||||||||||||||||||    
T  18757 attatctcttcgttgtggcgaacggagattaaccacattatctcttcgttgtgg 18704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 18721 - 18659
Alignment:
Q  16 attatttcttcgttgtggcgaacggagatataccacattatctcttcgttgtggtgaatggacg 79  Q
    ||||| ||||||||||||| ||||||||| |||||||||||||||||||||||| ||| |||||    
T  18721 attatctcttcgttgtggcaaacggagat-taccacattatctcttcgttgtggcgaacggacg 18659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 18792 - 18740
Alignment:
Q  16 attatttcttcgttgtggcgaacggagatataccacattatctcttcgttgtgg 69  Q
    ||||| |||||||||||| |||||||||| ||||||||||||||||||||||||    
T  18792 attatctcttcgttgtggtgaacggagat-taccacattatctcttcgttgtgg 18740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 18686 - 18629
Alignment:
Q  16 attatttcttcgttgtggcgaacgga----gatataccacattatctcttcgttgtgg 69  Q
    ||||| ||||||||||||||||||||    |||  |||||||||||||||||||||||    
T  18686 attatctcttcgttgtggcgaacggacggagattaaccacattatctcttcgttgtgg 18629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 33296270 - 33296217
Alignment:
Q  16 attatttcttcgttgtggcgaacggagatataccacattatctcttcgttgtgg 69  Q
    ||||| |||||||||||||||||||| |||||||||||||| ||||||||||||    
T  33296270 attatctcttcgttgtggcgaacggaaatataccacattatttcttcgttgtgg 33296217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 29934793 - 29934743
Alignment:
Q  22 tcttcgttgtggcgaacggagatataccacattatctcttcgttgtggtgaa 73  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  29934793 tcttcgttgtggcgaacggtgatataccacatt-tctcttcgttgtggtgaa 29934743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 29934828 - 29934782
Alignment:
Q  22 tcttcgttgtggcgaacggagatataccacattatctcttcgttgtgg 69  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  29934828 tcttcgttgtggcgaacggagatataccacatt-tctcttcgttgtgg 29934782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 33296234 - 33296189
Alignment:
Q  16 attatttcttcgttgtggcgaacggagatataccacattatctcttcg 63  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||    
T  33296234 attatttcttcgttgtggcgaacg--gatataccacattatctcttcg 33296189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 29934898 - 29934852
Alignment:
Q  22 tcttcgttgtggcgaacggagatataccacattatctcttcgttgtgg 69  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  29934898 tcttcgttgtggcgaacggtgatataccacatt-tctcttcgttgtgg 29934852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 27314006 - 27314051
Alignment:
Q  24 ttcgttgtggcgaacggagatataccacattatctcttcgttgtgg 69  Q
    |||||||| | ||||||||||| |||||||||||||||||||||||    
T  27314006 ttcgttgtagtgaacggagatagaccacattatctcttcgttgtgg 27314051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 27575836 - 27575883
Alignment:
Q  22 tcttcgttgtggcgaacggagatataccacattatctcttcgttgtgg 69  Q
    |||| ||||||| ||||||||||| |||||||| ||||||||||||||    
T  27575836 tctttgttgtggtgaacggagatagaccacattttctcttcgttgtgg 27575883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 29934863 - 29934817
Alignment:
Q  22 tcttcgttgtggcgaacggagatataccacattatctcttcgttgtgg 69  Q
    ||||||||||||||||||| |||| |||||||| ||||||||||||||    
T  29934863 tcttcgttgtggcgaacggtgatacaccacatt-tctcttcgttgtgg 29934817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 69
Target Start/End: Complemental strand, 29934739 - 29934698
Alignment:
Q  27 gttgtggcgaacggagatataccacattatctcttcgttgtgg 69  Q
    ||||||| |||||||||||||||||||| ||||||||||||||    
T  29934739 gttgtggtgaacggagatataccacatt-tctcttcgttgtgg 29934698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 11951400 - 11951355
Alignment:
Q  24 ttcgttgtggcgaacggagatataccacattatctcttcgttgtgg 69  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  11951400 ttcgttgtggcgaacggagatataccatattatctcttcgttgtgg 11951355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 45682297 - 45682244
Alignment:
Q  16 attatttcttcgttgtggcgaacggagatataccacattatctcttcgttgtgg 69  Q
    ||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  45682297 attatctcttcgttgtggcaaacggggatataccacattatctcttcgttgtgg 45682244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 2743678 - 2743628
Alignment:
Q  22 tcttcgttgtggcgaacggagatataccacattatctcttcgttgtggtgaa 73  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  2743678 tcttcgttgtggcgaacggtgatataccacatt-tctcttcgttgtggtgaa 2743628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 2743748 - 2743702
Alignment:
Q  22 tcttcgttgtggcgaacggagatataccacattatctcttcgttgtgg 69  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  2743748 tcttcgttgtggcgaacggagatataccacatt-tctcttcgttgtgg 2743702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 2743643 - 2743597
Alignment:
Q  22 tcttcgttgtggcgaacggagatataccacattatctcttcgttgtgg 69  Q
    |||||||||||| |||||||||||||||||||| ||||||||||||||    
T  2743643 tcttcgttgtggtgaacggagatataccacatt-tctcttcgttgtgg 2743597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 2743713 - 2743667
Alignment:
Q  22 tcttcgttgtggcgaacggagatataccacattatctcttcgttgtgg 69  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  2743713 tcttcgttgtggcgaacggtgatataccacatt-tctcttcgttgtgg 2743667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 2743783 - 2743737
Alignment:
Q  22 tcttcgttgtggcgaacggagatataccacattatctcttcgttgtgg 69  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  2743783 tcttcgttgtggcgaacggtgatataccacatt-tctcttcgttgtgg 2743737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 45682261 - 45682213
Alignment:
Q  16 attatttcttcgttgtggcgaacggagatataccacattatctcttcgtt 65  Q
    ||||| |||||||||||||||||||||||||| |||||||||||| ||||    
T  45682261 attatctcttcgttgtggcgaacggagatata-cacattatctctccgtt 45682213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 411813 - 411866
Alignment:
Q  16 attatttcttcgttgtggcgaacggagatataccacattatctcttcgttgtgg 69  Q
    ||||| |||||||||||||||||||||||  |||||||||||||||||||||||    
T  411813 attatctcttcgttgtggcgaacggagattaaccacattatctcttcgttgtgg 411866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 411849 - 411911
Alignment:
Q  16 attatttcttcgttgtggcgaacggagatataccacattatctcttcgttgtggtgaatggacg 79  Q
    ||||| ||||||||||||| ||||||||| |||||||||||||||||||||||| ||| |||||    
T  411849 attatctcttcgttgtggcaaacggagat-taccacattatctcttcgttgtggcgaacggacg 411911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 411778 - 411830
Alignment:
Q  16 attatttcttcgttgtggcgaacggagatataccacattatctcttcgttgtgg 69  Q
    ||||| |||||||||||| |||||||||| ||||||||||||||||||||||||    
T  411778 attatctcttcgttgtggtgaacggagat-taccacattatctcttcgttgtgg 411830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 411884 - 411941
Alignment:
Q  16 attatttcttcgttgtggcgaacgga----gatataccacattatctcttcgttgtgg 69  Q
    ||||| ||||||||||||||||||||    |||  |||||||||||||||||||||||    
T  411884 attatctcttcgttgtggcgaacggacggagattaaccacattatctcttcgttgtgg 411941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0927 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0927
Description:

Target: scaffold0927; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 3484 - 3537
Alignment:
Q  16 attatttcttcgttgtggcgaacggagatataccacattatctcttcgttgtgg 69  Q
    ||||| |||||||||||| ||||| | |||||||||||||||||||||||||||    
T  3484 attatctcttcgttgtggggaacgaaaatataccacattatctcttcgttgtgg 3537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University