View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7746_high_12 (Length: 326)
Name: NF7746_high_12
Description: NF7746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7746_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 11 - 114
Target Start/End: Original strand, 8848231 - 8848331
Alignment:
| Q |
11 |
tttggtgttaagtcttccaacttatgattttccaacctatgttccaacatagacacttttcactacaa-gtctatatataactccaacatccacctctac |
109 |
Q |
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| T |
8848231 |
tttggtattaagtcttccaacttatgattttccaacctatgttccaacatagacacttttcactacaacgtc----tataactccaacatccacatctac |
8848326 |
T |
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| Q |
110 |
tcctc |
114 |
Q |
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| T |
8848327 |
tcctc |
8848331 |
T |
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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 165 - 201
Target Start/End: Original strand, 8848413 - 8848449
Alignment:
| Q |
165 |
attgattgtttttagtttgaatttgacaagattaatg |
201 |
Q |
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| T |
8848413 |
attgattgtttttagtttgaatttgacaagattaatg |
8848449 |
T |
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