View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7746_high_3 (Length: 546)
Name: NF7746_high_3
Description: NF7746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7746_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 17 - 276
Target Start/End: Original strand, 3224641 - 3224900
Alignment:
| Q |
17 |
attgcatacattatccaatgagtatagtcattgttcaaaacatgaacaaaaccatatctgcaccttggcattctttgaatcaatccttgtccaaagtggt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3224641 |
attgcatacattatccaatgagtatagtcattgttcaaaacatgaacaaaaccatatctgcaccttggcattctttgaatcaatccttgtccaaagtggt |
3224740 |
T |
|
| Q |
117 |
tgaatgctactgttatttgcataagcttgtcgtcagtgtatgaatcactagctccaaataacataacctgcaatcagagacggacccagaaattttaagt |
216 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3224741 |
tgaatgctactgttatttgcataagcttgtcaccagtgtatgaatcactagctccaaataacataacctgcaatcagagacggacccataaattttaagt |
3224840 |
T |
|
| Q |
217 |
aatgtaggccatgtatatacattttgcagaaattaaatatcatataaaatttcatttttt |
276 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3224841 |
aatgtaggccatgtatatacattttgcagaaattaaatatcatataaaatttcatttttt |
3224900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 296 - 536
Target Start/End: Original strand, 3224945 - 3225185
Alignment:
| Q |
296 |
ttacttacatcattatgttttgtcatgtgacaatttgagattgtgataccagtagaaccttggataacatcaacaagaccatcctcacattcagagagtg |
395 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
3224945 |
ttacttacatcattatgttttgtcatgtgacaatttgagattgtgataccagtagaaccttggataatatcaacaagaccatcctcacattcagagagtg |
3225044 |
T |
|
| Q |
396 |
aaagatgatcaatccaaatattggaagatccataaatagagatagcatcaccatcacttcttgttctttgtccagtatggtcaaaagaatccctaatcaa |
495 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3225045 |
aaagatgatcaatccaaatattggaagatccataaatagagatagcatcaccatcacttcttgttctttgtccagtatggtcaaaagaatccctaatcaa |
3225144 |
T |
|
| Q |
496 |
accacctggtttagctttaatatcttgaatatgatgtccat |
536 |
Q |
| |
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||||||||||||||||||||||| |||||||||| |||||| |
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| T |
3225145 |
accacctggtttagctttaatattttgaatatgaagtccat |
3225185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 3e-31; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 20 - 185
Target Start/End: Complemental strand, 2045805 - 2045640
Alignment:
| Q |
20 |
gcatacattatccaatgagtatagtcattgttcaaaacatgaacaaaaccatatctgcaccttggcattctttgaatcaatccttgtccaaagtggttga |
119 |
Q |
| |
|
|||||||| |||||||| || || ||||||||||||||||| | ||| || ||||||| ||||||||||||||||||||||||||||| || ||||||| |
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| T |
2045805 |
gcatacatgatccaatgtgtgtaatcattgttcaaaacatggaaaaatccccatctgcatcttggcattctttgaatcaatccttgtccgaaatggttga |
2045706 |
T |
|
| Q |
120 |
atgctactgttatttgcataagcttgtcgtcagtgtatgaatcactagctccaaataacataacct |
185 |
Q |
| |
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|||| ||||| | |||||||| |||||| || |||| ||||||||||||||| ||||| |||| |
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| T |
2045705 |
atgcaactgtgacttgcataatcttgtcatcttgatatgtatcactagctccaaacaacatcacct |
2045640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 297 - 501
Target Start/End: Complemental strand, 2045522 - 2045318
Alignment:
| Q |
297 |
tacttacatcattatgttttgtcatgtgacaatttgagattgtgataccagtagaaccttggataacatcaacaagaccatcctcacattcagagagtga |
396 |
Q |
| |
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|||||||||| |||||||| |||||||| ||||||||||| |||| ||||||| ||||| || |||||||||||||||||||| || | ||| | || |
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| T |
2045522 |
tacttacatcgttatgtttggtcatgtggcaatttgagatggtgactgcagtagagccttgaatgacatcaacaagaccatcctcgcaattagataagga |
2045423 |
T |
|
| Q |
397 |
aagatgatcaatccaaatattggaagatccataaatagagatagcatcaccatcacttcttgttctttgtccagtatggtcaaaagaatccctaatcaaa |
496 |
Q |
| |
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|| |||||||||||| || || || || ||| | | ||||||||||||||||||||| ||||||||| ||| ||| || ||||| || ||||||||| |
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| T |
2045422 |
aatatgatcaatccagatgtttgatgaaccaaagacagagatagcatcaccatcactccttgttcttactccgagatgatcgaaagagtctctaatcaaa |
2045323 |
T |
|
| Q |
497 |
ccacc |
501 |
Q |
| |
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||||| |
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|
| T |
2045322 |
ccacc |
2045318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 138
Target Start/End: Original strand, 25006565 - 25006683
Alignment:
| Q |
20 |
gcatacattatccaatgagtatagtcattgttcaaaacatgaacaaaaccatatctgcaccttggcattctttgaatcaatccttgtccaaagtggttga |
119 |
Q |
| |
|
||||||||| ||||||||| ||||||||||| | | ||||||||||||| |||| |||||||||||||| | |||| | |||||||||||||| |
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| T |
25006565 |
gcatacatttcccaatgagtgtagtcattgttaacacaatgaacaaaaccaaatcttgctcttggcattctttggactaatctctttccaaagtggttga |
25006664 |
T |
|
| Q |
120 |
atgctactgttatttgcat |
138 |
Q |
| |
|
|||| | ||| |||||||| |
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| T |
25006665 |
atgccaatgtgatttgcat |
25006683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 138
Target Start/End: Complemental strand, 16911820 - 16911717
Alignment:
| Q |
35 |
tgagtatagtcattgttcaaaacatgaacaaaaccatatctgcaccttggcattctttgaatcaatccttgtccaaagtggttgaatgctactgttattt |
134 |
Q |
| |
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||||| ||||||||||| | ||||| | ||||||| |||| ||||||||||| ||||| || |||| | ||||||||||||||||| ||||| || | |
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| T |
16911820 |
tgagtgtagtcattgttaagcacatggataaaaccaaatctacaccttggcatcctttggattaatctcttaccaaagtggttgaatgcaactgtgatct |
16911721 |
T |
|
| Q |
135 |
gcat |
138 |
Q |
| |
|
|||| |
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|
| T |
16911720 |
gcat |
16911717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 44709775 - 44709659
Alignment:
| Q |
20 |
gcatacattatccaatgagtatagtcattgttcaaaacatgaacaaaaccatatctgcaccttggcattctttgaatcaatccttgtccaaagtggttga |
119 |
Q |
| |
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|||||||| | ||||||||| ||||||||||| | || ||||| || || |||| ||||||||||| || || |||||||||| ||||| ||||| | |
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| T |
44709775 |
gcatacataagccaatgagtgtagtcattgttaacaatatgaaagaatccccatctacaccttggcatcctctgtatcaatcctttcccaaaatggttaa |
44709676 |
T |
|
| Q |
120 |
atgctactgttatttgc |
136 |
Q |
| |
|
| || || ||||||||| |
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| T |
44709675 |
aagccacagttatttgc |
44709659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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