View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7746_high_5 (Length: 466)
Name: NF7746_high_5
Description: NF7746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7746_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 386; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 16 - 449
Target Start/End: Complemental strand, 37793127 - 37792694
Alignment:
| Q |
16 |
attcactcacagtctctatgaatgcatccataaccggaagttcactgccatcaaaaactgaattttcatgtgatatagtggaagcgaaattttctgttgt |
115 |
Q |
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|||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37793127 |
attcactcacagtctccatgaatgcatccataaacggaagttcactaccatcaaaaactgaattttcatgtgatatagtggaagcgaaattttctgttgt |
37793028 |
T |
|
| Q |
116 |
tatgcaagagaatccacttgaaaatggttgcgaagattgtggactcgtaatattgggatcgatgttgttctcaaaaactccttcaagtttcttggtttca |
215 |
Q |
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|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
37793027 |
tatgcaagagaatccacttgaaaatggttgtgaagatagtggactcgtaatattgggatcgatattgttctcaaaaactccttcaagtttcttggtttct |
37792928 |
T |
|
| Q |
216 |
tccattgtagggtgattatgggggacatatgaattgtctatcatatatggctctgtccagaaactctcactaaaattgtccatgtatgtttccataaaag |
315 |
Q |
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| T |
37792927 |
tccattgtagggtgattatgggggacatatgaattgtctatcatatatggctctgtccagaaattctcactaaaattctccatgtatgtttccataaaag |
37792828 |
T |
|
| Q |
316 |
aaaggtcattatcatcaagaattgcattgtccattgttatgcaagacaattcgcttgaagatggttgtggagatatttgatttgcaatattaggatcatt |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
37792827 |
aaaggtcattatcatcaagaattgcattgtccattgttatgcaagacaattcgcttgaagatggttgcggagatatttgatttgcaatattaggatcatt |
37792728 |
T |
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| Q |
416 |
gttgttctctaaaactccttcaaatttcttaggt |
449 |
Q |
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| T |
37792727 |
gttgctctctaaaactacttcaaatttcttaggt |
37792694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 77 - 339
Target Start/End: Complemental strand, 37793534 - 37793272
Alignment:
| Q |
77 |
attttcatgtgatatagtggaagcgaaattttctgttgttatgcaagagaatccacttgaaaatggttgcgaagattgtggactcgtaatattgggatcg |
176 |
Q |
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||||||||||||||| ||||||| | |||||| ||||||| ||||||||||| |||| ||||||| |||||| |||||| | |||||||||| |
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| T |
37793534 |
attttcatgtgatattgtggaagtaacattttccattgttattgaagagaatccatttgatgatggttgtgaagatactggactaacactattgggatca |
37793435 |
T |
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| Q |
177 |
atgttgttctcaaaaactccttcaagtttcttggtttcatccattgtagggtgattatgggggacatatgaattgtctatcatatatggctctgtccaga |
276 |
Q |
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||||||| ||||||||||||||||| |||||||| ||| ||||||||| |||||||| | ||| || |||| |||| |||||||||||||||| ||||| |
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| T |
37793434 |
atgttgtactcaaaaactccttcaattttcttggcttcttccattgtaaggtgattacgaaggaaatgtgaactgtcaatcatatatggctctgaccaga |
37793335 |
T |
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| Q |
277 |
aactctcactaaaattgtccatgtatgtttccataaaagaaaggtcattatcatcaagaattg |
339 |
Q |
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| T |
37793334 |
aattctcactcaaattctctatgtatgcatccataaaatgaaggtcattgtcatcaagaattg |
37793272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 178 - 274
Target Start/End: Complemental strand, 37793229 - 37793133
Alignment:
| Q |
178 |
tgttgttctcaaaaactccttcaagtttcttggtttcatccattgtagggtgattatgggggacatatgaattgtctatcatatatggctctgtcca |
274 |
Q |
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|||||||||| ||||||||||||| ||| |||| ||| |||| ||||||||| |||| ||| ||| ||| ||||||||||||||||||||||||| |
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| T |
37793229 |
tgttgttctctaaaactccttcaaatttattggcttcttccaatgtagggtgcttatatggggaataggaagtgtctatcatatatggctctgtcca |
37793133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 116 - 232
Target Start/End: Complemental strand, 37809388 - 37809272
Alignment:
| Q |
116 |
tatgcaagagaatccacttgaaaatggttgcgaagattgtggactcgtaatattgggatcgatgttgttctcaaaaactccttcaagtttcttggtttca |
215 |
Q |
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|||||||||| || |||||| | ||||||| |||||| ||||||||||||||||| ||| |||||||||| || | | || |||||||||||| || |
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| T |
37809388 |
tatgcaagaggatgcacttgtagatggttgtgaagatggtggactcgtaatattgaaatcactgttgttctctaacatttctccaagtttcttgggtttt |
37809289 |
T |
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| Q |
216 |
tccattgtagggtgatt |
232 |
Q |
| |
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||||||||||||||||| |
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| T |
37809288 |
tccattgtagggtgatt |
37809272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 398 - 442
Target Start/End: Complemental strand, 37793246 - 37793202
Alignment:
| Q |
398 |
tgcaatattaggatcattgttgttctctaaaactccttcaaattt |
442 |
Q |
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|||| ||||||||| |||||||||||||||||||||||||||||| |
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| T |
37793246 |
tgcagtattaggattattgttgttctctaaaactccttcaaattt |
37793202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 112 - 234
Target Start/End: Complemental strand, 37792794 - 37792672
Alignment:
| Q |
112 |
ttgttatgcaagagaatccacttgaaaatggttgcgaagattgtggactcgtaatattgggatcgatgttgttctcaaaaactccttcaagtttcttggt |
211 |
Q |
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||||||||||||| ||| | |||||| ||||||||| |||| | || | | |||||| ||||| ||||| |||| |||||| |||||| |||||| | |
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| T |
37792794 |
ttgttatgcaagacaattcgcttgaagatggttgcggagatatttgatttgcaatattaggatcattgttgctctctaaaactacttcaaatttcttagg |
37792695 |
T |
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| Q |
212 |
ttcatccattgtagggtgattat |
234 |
Q |
| |
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||| |||| |||||||||||||| |
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| T |
37792694 |
ttcttccaatgtagggtgattat |
37792672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 278
Target Start/End: Complemental strand, 37809533 - 37809493
Alignment:
| Q |
238 |
ggacatatgaattgtctatcatatatggctctgtccagaaa |
278 |
Q |
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| T |
37809533 |
ggacatataaactgtctattatatatggctctgtccagaaa |
37809493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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