View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7746_high_8 (Length: 400)
Name: NF7746_high_8
Description: NF7746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7746_high_8 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 43 - 382
Target Start/End: Original strand, 2056096 - 2056451
Alignment:
| Q |
43 |
ttatgaagctagttcctagcattggatgatgaggccaatgaaagtag---------------gtaaattgtacgttcacaactgcaatcagattgacgat |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | || |||| |
|
|
| T |
2056096 |
ttatgaagctagttcctagcattggatgatgaggccaatgaaagtagccaagacaactttaggtaaattgtacgttcacaactgcaatcaaactggcgat |
2056195 |
T |
|
| Q |
128 |
atttaatccgaaactacttatgtaacatgagtcgaacattactcataaaaaatcacatcaaaaccattttcacaccaagtgttgctaaagcatctgcacg |
227 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
2056196 |
atttaatccgaaactaattatgtaatatgagtcggacattactcataaaaaatcacatcaaacccattttcacaccaagtgttgctaaagcatctgcaca |
2056295 |
T |
|
| Q |
228 |
cttgtttacctcaggatatgtgtgatatactttcgcttcccaatccatttctaaccatcg-ataattcgctacactaacctataccaaaaaccgtgcatc |
326 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2056296 |
cttgtttaccttaggatatgtgtgatatactttcgcttcccaatccatttctaaccatcgaataattcgctacactaacctataccaaaaaccttgcatc |
2056395 |
T |
|
| Q |
327 |
ccgctttagtaattatcgggttaactcttacactacaatccatatgaagttaaact |
382 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2056396 |
ccgctttagtaattatcgggttaactcttacactacaatccatatgaagttgaact |
2056451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University