View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7746_low_1 (Length: 1427)
Name: NF7746_low_1
Description: NF7746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7746_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 648; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 648; E-Value: 0
Query Start/End: Original strand, 358 - 1076
Target Start/End: Complemental strand, 17725935 - 17725214
Alignment:
| Q |
358 |
aatattttataatcatttagttatgagcaatgaattacaaactcagacacaaacatcggacatggtactggtactaaacaatttaaaataaaatgacatg |
457 |
Q |
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| T |
17725935 |
aatattttataatcatttagttatgagcaatgaattacaaactcagacacaaacatcggacatggtactggtactaaacaatttaaaataaaatgacatg |
17725836 |
T |
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| Q |
458 |
attagacgtaatcatgcataggtgtcgtgtttacatatccggcgccaaaacatgtcatatccgacaccattaataatttaagtttttgaagtgattgaat |
557 |
Q |
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| T |
17725835 |
attagacgtaatcatgcacaggtgtcgtgtttacatatccgacaccaagacatgtcatatccgacaccaataataatttaattttttgaagtgattgaat |
17725736 |
T |
|
| Q |
558 |
caaatcatgtgtattagtattgatcgatatgtgtcagatatcaaacacgccgtcaatttaaagtatgagtaccataaaggaagtaaacaatataaaatta |
657 |
Q |
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| T |
17725735 |
caaatcatgtgtagtagtattgaacgatatgtgtcagatatcaaacacgccgtcaatttaaagtatgagtaccataaaggaagtaaacaatataaaatta |
17725636 |
T |
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| Q |
658 |
atttcaaacttatagtgtgtatagaatagaacattgatttgttattatgccttaatattgaacaggtattggaggctttctatacccattggagaagata |
757 |
Q |
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| T |
17725635 |
atgtcaaacttatagtgtgtatagaatagaacattgatttgttattatgccttaatattgaacaggtattggaggctttctatacccattggagaagata |
17725536 |
T |
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| Q |
758 |
ctgatcacccacttgtgaatccatttggaccaagaagtaagagtcttgaggaaattgatcttgacccaattcttgtggtggttggagaaaatgatttgct |
857 |
Q |
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| T |
17725535 |
ctgatcacccacttgtgaatccatttggaccaagaagtaagagtcttgaggaaattgatcttgacccaattcttgtggtggttggagaaaatgatttgct |
17725436 |
T |
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| Q |
858 |
taaagataggacagatgattatgtaagaaggcttaagaattggggtaaaaatatagagtatgtagaatttgaaggacaacagcatgggttcttcactctt |
957 |
Q |
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| T |
17725435 |
taaagataggacagaggattatgcaagaaggcttaagaattggggtaaaaatatagagtatgtagaatttgaaggacaacagcatgggttcttcactatt |
17725336 |
T |
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| Q |
958 |
gatccaaattcagaaccatcaaaagaattgatgttgttcatcaagcaattcattgaaaaatattgaggg---aatgtttgaatgcttcaaacattttaat |
1054 |
Q |
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| T |
17725335 |
gatccaaattcagaaccatcaaaagaattgatgttggtcatcaagcaattcattgagaaatattaagggaataatgtttgaatgcttcaaacattttaat |
17725236 |
T |
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| Q |
1055 |
tgcagtagcttttaaggtatct |
1076 |
Q |
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| T |
17725235 |
tgcagtagcttttaaggtatct |
17725214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 14 - 366
Target Start/End: Complemental strand, 17726313 - 17725961
Alignment:
| Q |
14 |
ccatgtgctattgaagatggtttcatggctgttaagtggcttcaagaagaagctttgaggagtgagatggatccatggttgagccatgtggctgatttta |
113 |
Q |
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| T |
17726313 |
ccatgtgctattgaagatggtttcatggctgttaagtggcttcaagaagaagctttgaagagtgagatggatccttggttgagccatgtggctgatttta |
17726214 |
T |
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| Q |
114 |
accgggtttttatttcgggtgactcggctggtggtaatatagctcataatttggcggttcggcttgggtttggttcggttgagttggcaccggttagggt |
213 |
Q |
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| T |
17726213 |
accgggtttttatttcgggtgactcggctggtggtaatatagctcataatttggcggttcggcttgggtttggttcggttgagttggcaccggttcgggt |
17726114 |
T |
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| Q |
214 |
taggggttatgttttgttggctccgttttttggtggaaccgtgaggaccaagtcagaagctgaaggaccggttgatgcttttctcaacttggaatatatt |
313 |
Q |
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| T |
17726113 |
taggggttatgttttgttggcaccgtttattggtggaaccgtgaggaccaagtcagaagctgaaggaccggttgatgcttttctcaacttggaatatatt |
17726014 |
T |
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| Q |
314 |
gacaggttctgtaatttgatttcctatcttcactttgcataccaaatatttta |
366 |
Q |
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| T |
17726013 |
gacaggttctgtaatttgatttcctatcttcactttgcataccaaatatttta |
17725961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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