View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7746_low_10 (Length: 399)
Name: NF7746_low_10
Description: NF7746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7746_low_10 |
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| [»] scaffold1457 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Complemental strand, 29684037 - 29683653
Alignment:
| Q |
1 |
gcttgaccgtaacatgtcaacttacttacattcgtaaatagagatccccttgagaactgcccctatttgggaatccacagtcgaggaactttcccgtggg |
100 |
Q |
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| T |
29684037 |
gcttgaccgtaacatgtcaacttacttacattcgtaaatagagatccccttgagaactgcccctatttgggaatccacagtcgaggaactttcccgtggg |
29683938 |
T |
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| Q |
101 |
gatgggggaacaaattccacgaggaaactgcaggaatggggacaacaacatacgtccccagcccatggggtttcacacccaagata-tttactaaaagac |
199 |
Q |
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| T |
29683937 |
gatgggggaacaaattccacgaggaaactgcaggaatggggacaacaacatacgtccccagcccatggggtttcacacccaagatattttactaaaagac |
29683838 |
T |
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| Q |
200 |
cttctatatttaacaaatatacttcatatttactaaaagacaataacgtactttcataattattcatgttatcatatatgcaagttatttgttttgttct |
299 |
Q |
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| T |
29683837 |
cttttatatttaacaaatatacttcatatttactaaaagacaataacgtactttcatgattattcatgttatcatatatgcaagttatttgttttgttct |
29683738 |
T |
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| Q |
300 |
tcaacattaatgtgtgttttattgacttctattattgaacnnnnnnnnnttgtggtttgtcttcaagaagaatgaatgcaacaac |
384 |
Q |
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| T |
29683737 |
tcaacattaatgtgtgttttattgacttctattattgaacaaaaaaaaattgtggtttgtcttcaagaagaatgaatgcaacaac |
29683653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 275 - 383
Target Start/End: Original strand, 14604050 - 14604160
Alignment:
| Q |
275 |
atatgcaagttatttgttttgttcttcaacattaatgtgtgttttattgacttctattattgaacnnnnnnnnn-----ttgtggtttgtcttcaagaag |
369 |
Q |
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| T |
14604050 |
atatgcaggttatttgttt-gttcttcaacattaatgtgt--ttgattgagttctattattgaacaaaaaaaaagaaagttgtggtttgtcttcaagaag |
14604146 |
T |
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| Q |
370 |
aatgaatgcaacaa |
383 |
Q |
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| T |
14604147 |
aatgaatgcaacaa |
14604160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1457 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1457
Description:
Target: scaffold1457; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 349 - 383
Target Start/End: Complemental strand, 1615 - 1581
Alignment:
| Q |
349 |
ttgtggtttgtcttcaagaagaatgaatgcaacaa |
383 |
Q |
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| T |
1615 |
ttgtggtttgtcttcaagaagaatgaatgcaacaa |
1581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 278
Target Start/End: Original strand, 13494471 - 13494516
Alignment:
| Q |
233 |
taaaagacaataacgtactttcataattattcatgttatcatatat |
278 |
Q |
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| T |
13494471 |
taaaggacaataatgtaccttgataattattcatgttatcatatat |
13494516 |
T |
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