View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7746_low_12 (Length: 328)
Name: NF7746_low_12
Description: NF7746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7746_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 44262582 - 44262898
Alignment:
| Q |
1 |
gttatgccattaattgatgggatgtatgtgtatctttaagtcccatttcagttatcggatggataggaatagaattactctaatcttcgcaagtagttat |
100 |
Q |
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| T |
44262582 |
gttatgccattaattgatgggatgtatgtgtatctttaagtcccatttcagttatcggatggataggaatagaattactctaatcttcgcaagtagttat |
44262681 |
T |
|
| Q |
101 |
cgaatggataagtatagaatacatggcctgctttcattcctacaagcattaggacagtctggtttggcatgactactgcaattgctgttgttctgtttgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
44262682 |
cgaatggataagtatagaatacatggcctgctttcattcctacaagcattaggacagtctggtttggcatgactactgcaattgttgttgttctgtttgt |
44262781 |
T |
|
| Q |
201 |
gtagttaagcgattta---------cagcagagttttgggttcaatatagtaaggaaggagatctaaggagaggagctttggaggtttaatagcatattg |
291 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
44262782 |
gtagttaagcgatttacagagcttgcagcagagttttgggttcaatatagtaaggaaggagatctaaggagaggagctttggaggttaaatagcatattg |
44262881 |
T |
|
| Q |
292 |
gtttacaccaagtctgt |
308 |
Q |
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||||||||||||||||| |
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| T |
44262882 |
gtttacaccaagtctgt |
44262898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 125 - 308
Target Start/End: Original strand, 56165239 - 56165434
Alignment:
| Q |
125 |
ggcctgctttcattcctacaagcattaggacagtctggtttggcatgactactgcaattgctgttgttctgtttgtgtagttaagcgatttacag----- |
219 |
Q |
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|||||| |||||||||||| ||||||||||| | ||| |||| ||||| |||| ||| || ||||| |||| ||| ||||||||||| |||| |
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| T |
56165239 |
ggcctggtttcattcctaccagcattaggaccatttggattggtgtgactgctgcgattcctcttgttttgttcgtgcggttaagcgattgacagagctt |
56165338 |
T |
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| Q |
220 |
----cagagttttgggttcaatatagtaaggaaggagatctaa----ggagaggagctttggaggtttaatagcatattggtttacaccaagtctgt |
308 |
Q |
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|||| |||||||||||||||||||||||| ||||| ||| | || ||| ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
56165339 |
gcagcagaattttgggttcaatatagtaaggaaagagatttaattaagaagtggaactttggaggtt-aatagcatattggtttacaccaagtctgt |
56165434 |
T |
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