View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7746_low_14 (Length: 288)
Name: NF7746_low_14
Description: NF7746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7746_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 176; Significance: 7e-95; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 2055305 - 2055588
Alignment:
| Q |
1 |
tttggtaggagaacataaaatttaatggatctttatattttt-gcagaaggtcaagttgaagaagatgcgtattgttgatcatatgacaacgccattgtc |
99 |
Q |
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|||||||||| || |||||||||||||||| |||| |||||| | ||| |||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
2055305 |
tttggtaggataatataaaatttaatggatttttaaattttttgtagagggtcaagttgaagaagatgcgtattgttgatcatatgacagtgccgttgtc |
2055404 |
T |
|
| Q |
100 |
aaaaactaatggcaa-ctatgttacattcctgcgaaaaacaatttactatattgggtgttttgcatgcgacaaatcatgtcaaaggtcaaatgttgttta |
198 |
Q |
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||||||||||||||| |||||||||||| |||| |||||||||||| |||||||||||||||||| ||||| ||||||||||||||| ||||||||| |
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| T |
2055405 |
aaaaactaatggcaaactatgttacatttctgccaaaaacaatttagcatattgggtgttttgcatatgacaatgcatgtcaaaggtcaattgttgttta |
2055504 |
T |
|
| Q |
199 |
caattttgtaatttgaacatgccatgac-ttgtaaatttaaatgccctccatttgcttaggaagttaaaaaccaaatactgcta |
281 |
Q |
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| T |
2055505 |
caattttgtaatttgaacatgccatgactttgtaaatgtaaatgcccaccatttgcttaggaagttaaaaatcaaatactgcta |
2055588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 2063294 - 2063455
Alignment:
| Q |
1 |
tttggtaggagaacataaaatttaatggatctttatatttttgcagaaggtcaagttgaagaagatgcgtattgttgatcatatgacaacgccattgtca |
100 |
Q |
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|||||||||| || ||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||| ||||||||||||| |||| |||||| |
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| T |
2063294 |
tttggtaggaaaaaataaaatttaatggatctttatatttttgtagatggtgaagttgaagaagatgcgtactgttgatcatatggtggcgccgttgtca |
2063393 |
T |
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| Q |
101 |
aaaactaatggcaactatgttacattcctgcgaaaaacaatttactatattgggtgttttgc |
162 |
Q |
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| T |
2063394 |
aaaactaatggcaactatgttacatttctgcaaaaaacaatttagcatattggatgttttgc |
2063455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 2059466 - 2059689
Alignment:
| Q |
1 |
tttggtaggagaacataaaatttaatggatctttatatttttgcagaaggtcaagttgaagaagatgcgtattgttgatcatatgacaacgccattgtc- |
99 |
Q |
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|||||||||| |||||| ||||||||||||||||||||||||| ||| || |||||||||||||||| |||||||||||| |||||| |||| ||||| |
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| T |
2059466 |
tttggtaggaaaacatacaatttaatggatctttatatttttgtagatggcgaagttgaagaagatgcatattgttgatcacatgacagcgccgttgtca |
2059565 |
T |
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| Q |
100 |
aaaaactaatggcaactatgttacattcctgcgaaaaacaatttactatattgggtgttttgcatgcgacaaatcatgtcaaaggtcaaatgttgtttac |
199 |
Q |
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| T |
2059566 |
aaaaacgaatggcgactatgttagatttctaccaaaaacaatttagcatgatggatgttttgcatgcgtcactacatgtcaaaggttaaatgttgtttac |
2059665 |
T |
|
| Q |
200 |
aattttg-taatttgaacatgcca |
222 |
Q |
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||| ||| ||||||||| |||||| |
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| T |
2059666 |
aatattgttaatttgaatatgcca |
2059689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 11 - 231
Target Start/End: Original strand, 2049214 - 2049438
Alignment:
| Q |
11 |
gaacataaaatttaatggatctttatatttttgcagaaggtcaagttgaagaagatgcgtattgttgatcatatgacaac--gccattgtcaaaaactaa |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||| ||||||| | | | |||| |||||||| ||| |
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| T |
2049214 |
gaacataaaatttaatggatctttatatttttgtagatggtcaagttgaagaagatcgatatatctgatcatcaaatagcatgccactgtcaaaatctat |
2049313 |
T |
|
| Q |
109 |
tggcaa-ctatgttacattcctgcgaaaaacaatttactatattgggtgttttgcatgcgacaaatcatgtcaaaggtcaaatgttgtttacaattttg- |
206 |
Q |
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||||| |||||||||||| ||| |||||||||||| ||||| ||||||| |||| |||| || ||||||||||||||||||||||||||||| |
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| T |
2049314 |
aggcaaactatgttacatttttgcctaaaacaatttaccatatttggtgtttgacatgtgacactgaatatcaaaggtcaaatgttgtttacaattttgt |
2049413 |
T |
|
| Q |
207 |
taatttgaacatgccatgacttgta |
231 |
Q |
| |
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|| |||||||||||||||||||||| |
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| T |
2049414 |
tattttgaacatgccatgacttgta |
2049438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 174 - 225
Target Start/End: Original strand, 2103481 - 2103533
Alignment:
| Q |
174 |
catgtcaaaggtcaaatgttgtttacaattttgt-aatttgaacatgccatga |
225 |
Q |
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||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
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| T |
2103481 |
catgtcaaaggtcgaatgttgtttacaattttgtcaatttgaacatgccatga |
2103533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 66
Target Start/End: Original strand, 2042586 - 2042641
Alignment:
| Q |
11 |
gaacataaaatttaatggatctttatatttttgcagaaggtcaagttgaagaagat |
66 |
Q |
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| T |
2042586 |
gaacataaaatttaatggatcttcatatttttttagatggtcaagttgaagaagat |
2042641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 204
Target Start/End: Original strand, 2042752 - 2042782
Alignment:
| Q |
174 |
catgtcaaaggtcaaatgttgtttacaattt |
204 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
2042752 |
catgtcaaaggtcaaatgttgtttacaattt |
2042782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 221
Target Start/End: Original strand, 2099583 - 2099631
Alignment:
| Q |
174 |
catgtcaaaggtcaaatgttgtttacaattttgt-aatttgaacatgcc |
221 |
Q |
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|||||||||||||||||||||||| ||| |||| |||||||||||||| |
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| T |
2099583 |
catgtcaaaggtcaaatgttgtttgtaatattgtaaatttgaacatgcc |
2099631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 174 - 225
Target Start/End: Complemental strand, 39182216 - 39182164
Alignment:
| Q |
174 |
catgtcaaaggtcaaatgttgtttacaattttgt-aatttgaacatgccatga |
225 |
Q |
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| T |
39182216 |
catgtcaaaagtcaaatgttgtttacaattttgtcaatttgaacatgccatga |
39182164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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