View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7746_low_16 (Length: 259)

Name: NF7746_low_16
Description: NF7746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7746_low_16
NF7746_low_16
[»] chr4 (6 HSPs)
chr4 (21-226)||(49583081-49583286)
chr4 (94-219)||(5198998-5199124)
chr4 (102-186)||(4848615-4848699)
chr4 (149-226)||(15522606-15522683)
chr4 (48-117)||(29866154-29866223)
chr4 (227-259)||(49583343-49583375)
[»] chr5 (3 HSPs)
chr5 (40-161)||(37247603-37247723)
chr5 (70-113)||(27983524-27983567)
chr5 (87-186)||(31898075-31898172)
[»] chr2 (1 HSPs)
chr2 (40-117)||(5430280-5430357)
[»] chr8 (2 HSPs)
chr8 (95-186)||(7411339-7411429)
chr8 (90-158)||(3424305-3424372)
[»] chr6 (2 HSPs)
chr6 (88-163)||(6134221-6134296)
chr6 (92-152)||(2721839-2721899)
[»] chr1 (6 HSPs)
chr1 (47-167)||(26828549-26828669)
chr1 (36-108)||(34664919-34664991)
chr1 (139-207)||(35811949-35812017)
chr1 (177-226)||(16424901-16424950)
chr1 (75-111)||(14081707-14081743)
chr1 (146-186)||(32900378-32900418)


Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 21 - 226
Target Start/End: Original strand, 49583081 - 49583286
Alignment:
Q  21 gttgcgttaagatgtcgcaatttcgattgttacagatgttgcattgcgcattgtggttgtcgcagcgtgaattaatcacaacattgcataattcttataa 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  49583081 gttgcgttaagatgtcgcaatttcgattgttacagatgttgcattgcgcattgtggttgtcgcagcgtgaattaatcacaacattgcataagtcttataa 49583180  T
Q  121 aaattaattatactatcttatattgtataatagcttaatttctcattatttcttcttaatttcatagtgtaattattttcataatttagtaatgaattta 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49583181 aaattaattatactatcttatattgtataatagcttaatttctcattatttcttcttaatttcatagtgtaattattttcataatttagtaatgaattta 49583280  T
Q  221 tttctt 226  Q
    ||||||    
T  49583281 tttctt 49583286  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 94 - 219
Target Start/End: Original strand, 5198998 - 5199124
Alignment:
Q  94 aatcacaacattgcataattcttataaaaattaattatactatcttatattgtataatagcttaatttctcattatttcttcttaatttca-tagtgtaa 192  Q
    ||||| ||||||||| || | |||| ||||||| ||||| |||| |||| ||||||||| |||||||||||||| ||||||| |||||||| || | |||    
T  5198998 aatcataacattgcacaaatattattaaaattatttatattatcatataatgtataataacttaatttctcattgtttcttcataatttcattactataa 5199097  T
Q  193 ttattttcataatttagtaatgaattt 219  Q
    || |||||||||||| |||||||||||    
T  5199098 ttcttttcataattttgtaatgaattt 5199124  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 102 - 186
Target Start/End: Complemental strand, 4848699 - 4848615
Alignment:
Q  102 cattgcataattcttataaaaattaattatactatcttatattgtataatagcttaatttctcattatttcttcttaatttcata 186  Q
    ||||||| || | |||| ||||||| |||||||||| |||| ||||||||| |||||||||||||| ||||||| ||||||||||    
T  4848699 cattgcacaaatattattaaaattatttatactatcatataatgtataataacttaatttctcattgtttcttcataatttcata 4848615  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 226
Target Start/End: Original strand, 15522606 - 15522683
Alignment:
Q  149 aatagcttaatttctcattatttcttcttaatttcatagtgtaattattttcataatttagtaatgaatttatttctt 226  Q
    |||| |||||||||| ||| ||| ||| |||||| ||| ||||||||||||||| |||  ||||||||||| ||||||    
T  15522606 aataacttaatttcttattgtttattcataattttataatgtaattattttcattattatgtaatgaatttgtttctt 15522683  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 117
Target Start/End: Complemental strand, 29866223 - 29866154
Alignment:
Q  48 tgttacagatgttgcattgcgcattgtggttgtcgcagcgtgaattaatcacaacattgcataattctta 117  Q
    |||||| |||||||| || |  |||||||||||||  | |||||||||||||||||||||| || |||||    
T  29866223 tgttactgatgttgcgttacagattgtggttgtcgtggtgtgaattaatcacaacattgcacaaatctta 29866154  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 227 - 259
Target Start/End: Original strand, 49583343 - 49583375
Alignment:
Q  227 agagcaaactcaatttgccttaaaaccaactat 259  Q
    |||||||||||||||| ||||||||||||||||    
T  49583343 agagcaaactcaattttccttaaaaccaactat 49583375  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 161
Target Start/End: Complemental strand, 37247723 - 37247603
Alignment:
Q  40 atttcgattgttacagatgttgcattgcgcattgtggttgtcgcagcgtgaattaatcacaacattgcataattcttataaaaattaattatactatctt 139  Q
    ||||||| |||||| |||||||| || |  |||||||||||||| | ||||||||||||||||| |||| || | ||||  |||| | |||| ||||| |    
T  37247723 atttcgagtgttacggatgttgcgttacagattgtggttgtcgcggtgtgaattaatcacaacaatgcacaaatattat-taaatcatttattctatcat 37247625  T
Q  140 atattgtataatagcttaattt 161  Q
    ||| ||||||||| ||||||||    
T  37247624 atagtgtataataacttaattt 37247603  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 70 - 113
Target Start/End: Original strand, 27983524 - 27983567
Alignment:
Q  70 attgtggttgtcgcagcgtgaattaatcacaacattgcataatt 113  Q
    |||||||| ||||||| |||||||||||||||||||||| ||||    
T  27983524 attgtggtcgtcgcagggtgaattaatcacaacattgcacaatt 27983567  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 186
Target Start/End: Complemental strand, 31898172 - 31898075
Alignment:
Q  87 gtgaattaatcacaacattgcataattcttataaaaattaattatactatcttatattgtataatagcttaatttctcattatttcttcttaatttcata 186  Q
    ||||||||||||||| ||| ||||| | |  | ||||||  ||||||||||  ||| ||| |||||||||||||||||| | ||| ||| ||||||||||    
T  31898172 gtgaattaatcacaatattccataaatgtggttaaaattctttatactatc--ataatgtttaatagcttaatttctcactgtttgttcataatttcata 31898075  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 117
Target Start/End: Complemental strand, 5430357 - 5430280
Alignment:
Q  40 atttcgattgttacagatgttgcattgcgcattgtggttgtcgcagcgtgaattaatcacaacattgcataattctta 117  Q
    |||||| ||||||| ||||||||||| |  |||||||||||||| | ||||||||||||||| |||||| || |||||    
T  5430357 atttcggttgttacggatgttgcattacagattgtggttgtcgcggtgtgaattaatcacaatattgcacaactctta 5430280  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 186
Target Start/End: Original strand, 7411339 - 7411429
Alignment:
Q  95 atcacaacattgcataattcttataaaaattaattatactatcttatattgtataatagcttaatttctcattatttcttcttaatttcata 186  Q
    ||||||||||| || || |||||| ||||||| ||||  ||||||||| ||||||||| |||||||||| ||| |||||||||  |||||||    
T  7411339 atcacaacatttcacaaatcttattaaaattatttatgatatcttataatgtataataacttaatttct-attgtttcttcttcttttcata 7411429  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 158
Target Start/End: Original strand, 3424305 - 3424372
Alignment:
Q  90 aattaatcacaacattgcataattcttataaaaattaattatactatcttatattgtataatagcttaa 158  Q
    |||||||||||||| |||| |||  |||||||||||| |||||||||| |||| ||||||||| |||||    
T  3424305 aattaatcacaacaatgcacaata-ttataaaaattatttatactatcatataatgtataataacttaa 3424372  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 163
Target Start/End: Original strand, 6134221 - 6134296
Alignment:
Q  88 tgaattaatcacaacattgcataattcttataaaaattaattatactatcttatattgtataatagcttaatttct 163  Q
    ||||||||||||||||||||| || |||||| ||||| | ||||||||||  ||| ||||||||| ||| ||||||    
T  6134221 tgaattaatcacaacattgcacaaatcttattaaaatcatttatactatcaaataatgtataataacttgatttct 6134296  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 152
Target Start/End: Complemental strand, 2721899 - 2721839
Alignment:
Q  92 ttaatcacaacattgcataattcttataaaaattaattatactatcttatattgtataata 152  Q
    ||||||||||| |||||||| | |||| ||||||| |||||||||| |||| |||||||||    
T  2721899 ttaatcacaaccttgcataaatattattaaaattatttatactatcatataatgtataata 2721839  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 167
Target Start/End: Complemental strand, 26828669 - 26828549
Alignment:
Q  47 ttgttacagatgttgcattgcgcattgtggttgtcgcagcgtgaattaatcacaacattgcataattcttataaaaattaattatactatcttatattgt 146  Q
    |||||| |||||||||||| |  |||||  ||||||| | || ||||||||||||||||||| || | |||| ||| ||| |||||||| | |||| |||    
T  26828669 ttgttatagatgttgcattacagattgttattgtcgcggtgtaaattaatcacaacattgcacaaattttattaaacttatttatactaacatataatgt 26828570  T
Q  147 ataatagcttaatttctcatt 167  Q
      || | ||||||||||||||    
T  26828569 gaaaaaacttaatttctcatt 26828549  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 108
Target Start/End: Complemental strand, 34664991 - 34664919
Alignment:
Q  36 cgcaatttcgattgttacagatgttgcattgcgcattgtggttgtcgcagcgtgaattaatcacaacattgca 108  Q
    |||||||||| ||||||| |||||||||||  | |||||||||||| | |  ||||||||| |||||||||||    
T  34664991 cgcaatttcggttgttacggatgttgcattatggattgtggttgtcacggtatgaattaattacaacattgca 34664919  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 207
Target Start/End: Complemental strand, 35812017 - 35811949
Alignment:
Q  139 tatattgtataatagcttaatttctcattatttcttcttaatttcatagtgtaattattttcataattt 207  Q
    |||| ||||||||| |||||||||||| | ||||||||||||| |||| ||||||| |||  |||||||    
T  35812017 tataatgtataataacttaatttctcactgtttcttcttaattccataatgtaattctttcaataattt 35811949  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 16424901 - 16424950
Alignment:
Q  177 taatttcatagtgtaattattttcataatttagtaatgaatttatttctt 226  Q
    |||||||||| || |||||||||| |||||| ||||||||||| ||||||    
T  16424901 taatttcataatgaaattattttcttaattttgtaatgaatttgtttctt 16424950  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 111
Target Start/End: Original strand, 14081707 - 14081743
Alignment:
Q  75 ggttgtcgcagcgtgaattaatcacaacattgcataa 111  Q
    ||||||||||| ||| |||||||||||||||||||||    
T  14081707 ggttgtcgcagtgtgcattaatcacaacattgcataa 14081743  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 186
Target Start/End: Complemental strand, 32900418 - 32900378
Alignment:
Q  146 tataatagcttaatttctcattatttcttcttaatttcata 186  Q
    ||||||| |||||||||||||| ||||||| ||||||||||    
T  32900418 tataataacttaatttctcattgtttcttcataatttcata 32900378  T

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