View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7746_low_18 (Length: 241)
Name: NF7746_low_18
Description: NF7746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7746_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 16 - 226
Target Start/End: Original strand, 18284576 - 18284786
Alignment:
| Q |
16 |
atccaaacatatgctaagtgttcgtttgatattgtgtcatgtttctcaaaagcacggtgacttttcacatgacgcagaagcttacatttgtcacttctgg |
115 |
Q |
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| T |
18284576 |
atccaaacatatgctaagtgttcttttgatattgtgtcatgtttctcaaaagcacgatgacttttcacatgacgcagaagcttacatttgtcacttctgg |
18284675 |
T |
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| Q |
116 |
atatcgcgggaaaaaggtcattgggacgcgagattatagtgggaaacgtagaaccaaacatgttatacttgtgttttgatgcatattttctcactctttc |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||| |
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| T |
18284676 |
atatcgcgggaaaaaggtcattgggacgcgagattatagtgggaaacgtggaaccaaacatgttatacgtgtgttttgatgcatgttttctcactctttc |
18284775 |
T |
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| Q |
216 |
tcacttcccta |
226 |
Q |
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|||||| |||| |
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| T |
18284776 |
tcactttccta |
18284786 |
T |
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