View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7746_low_2 (Length: 591)

Name: NF7746_low_2
Description: NF7746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7746_low_2
NF7746_low_2
[»] chr8 (24 HSPs)
chr8 (35-583)||(20232450-20232999)
chr8 (35-128)||(38287790-38287882)
chr8 (37-133)||(8605444-8605539)
chr8 (35-107)||(18464049-18464121)
chr8 (35-126)||(17607267-17607356)
chr8 (17-107)||(14019787-14019877)
chr8 (17-109)||(15711474-15711565)
chr8 (18-124)||(9596029-9596134)
chr8 (35-83)||(8276552-8276600)
chr8 (35-107)||(35908658-35908729)
chr8 (35-127)||(39587911-39588001)
chr8 (35-107)||(9596272-9596343)
chr8 (35-107)||(38288017-38288088)
chr8 (17-83)||(18905859-18905925)
chr8 (17-83)||(20298551-20298617)
chr8 (17-83)||(21085183-21085249)
chr8 (17-83)||(32931404-32931470)
chr8 (17-83)||(34248362-34248428)
chr8 (35-78)||(35561674-35561717)
chr8 (214-248)||(14019786-14019820)
chr8 (17-83)||(23027863-23027929)
chr8 (17-83)||(34248080-34248146)
chr8 (35-83)||(14582233-14582281)
chr8 (35-83)||(23027558-23027606)
[»] chr7 (44 HSPs)
chr7 (35-583)||(44314357-44314906)
chr7 (35-133)||(37755991-37756089)
chr7 (35-152)||(36270523-36270645)
chr7 (17-128)||(47346129-47346240)
chr7 (17-158)||(36495813-36495958)
chr7 (35-107)||(34748757-34748829)
chr7 (17-107)||(27585235-27585325)
chr7 (40-128)||(24240236-24240324)
chr7 (35-109)||(33909114-33909188)
chr7 (35-109)||(39550031-39550104)
chr7 (18-107)||(36270733-36270822)
chr7 (35-107)||(37756217-37756289)
chr7 (35-107)||(37761965-37762037)
chr7 (17-107)||(34914955-34915045)
chr7 (17-107)||(36495645-36495735)
chr7 (17-107)||(47346358-47346448)
chr7 (35-128)||(19843666-19843758)
chr7 (35-107)||(20296243-20296314)
chr7 (17-120)||(36092427-36092528)
chr7 (40-107)||(24240448-24240515)
chr7 (17-83)||(43384315-43384381)
chr7 (14-107)||(22206310-22206402)
chr7 (14-107)||(22228337-22228429)
chr7 (37-107)||(36092654-36092722)
chr7 (35-107)||(37530976-37531050)
chr7 (35-110)||(22686786-22686860)
chr7 (214-249)||(27585233-27585268)
chr7 (17-83)||(257302-257368)
chr7 (17-83)||(7135278-7135344)
chr7 (34-83)||(1663657-1663706)
chr7 (40-107)||(19843464-19843530)
chr7 (17-83)||(1661226-1661292)
chr7 (17-83)||(28910035-28910101)
chr7 (17-83)||(37272080-37272146)
chr7 (35-81)||(40121992-40122038)
chr7 (17-83)||(41670586-41670652)
chr7 (17-66)||(14991544-14991593)
chr7 (17-66)||(15421155-15421204)
chr7 (214-247)||(24240270-24240303)
chr7 (161-198)||(27585295-27585332)
chr7 (158-198)||(14991534-14991574)
chr7 (158-198)||(15421145-15421185)
chr7 (30-103)||(27729522-27729598)
chr7 (35-83)||(43167946-43167994)
[»] chr1 (39 HSPs)
chr1 (17-133)||(17294931-17295047)
chr1 (18-133)||(29228628-29228743)
chr1 (50-133)||(17294820-17294903)
chr1 (35-128)||(30604513-30604606)
chr1 (36-128)||(4187336-4187428)
chr1 (359-489)||(39637451-39637581)
chr1 (359-489)||(39646119-39646249)
chr1 (36-109)||(51722230-51722303)
chr1 (49-129)||(31411425-31411505)
chr1 (28-107)||(45443200-45443278)
chr1 (17-107)||(31411595-31411685)
chr1 (36-107)||(4187567-4187638)
chr1 (17-107)||(29228427-29228517)
chr1 (17-107)||(33562162-33562252)
chr1 (35-107)||(29383676-29383747)
chr1 (49-158)||(45858802-45858916)
chr1 (17-107)||(18585018-18585107)
chr1 (17-107)||(45858635-45858724)
chr1 (35-108)||(40521546-40521618)
chr1 (17-107)||(12287828-12287917)
chr1 (17-106)||(27958082-27958170)
chr1 (35-107)||(40642829-40642903)
chr1 (35-83)||(28509440-28509488)
chr1 (17-83)||(2697366-2697432)
chr1 (17-83)||(4022160-4022226)
chr1 (17-83)||(19937078-19937144)
chr1 (35-125)||(27957862-27957950)
chr1 (17-83)||(8520128-8520194)
chr1 (17-83)||(17419790-17419856)
chr1 (17-83)||(38474286-38474352)
chr1 (37-83)||(20208137-20208183)
chr1 (37-83)||(20208436-20208482)
chr1 (17-83)||(31305714-31305780)
chr1 (17-78)||(33342313-33342374)
chr1 (161-198)||(45443259-45443296)
chr1 (157-198)||(45858694-45858735)
chr1 (214-247)||(51722232-51722265)
chr1 (161-200)||(13356944-13356984)
chr1 (35-83)||(37600875-37600923)
[»] chr2 (41 HSPs)
chr2 (17-133)||(11349828-11349944)
chr2 (17-158)||(10861869-10862015)
chr2 (17-133)||(11350222-11350338)
chr2 (17-128)||(15961835-15961946)
chr2 (35-107)||(14280259-14280331)
chr2 (35-133)||(10862260-10862357)
chr2 (17-107)||(15962192-15962282)
chr2 (18-107)||(39420676-39420765)
chr2 (35-107)||(4506093-4506164)
chr2 (35-107)||(10862111-10862182)
chr2 (35-107)||(32810929-32811001)
chr2 (35-106)||(936792-936863)
chr2 (17-107)||(33532771-33532860)
chr2 (14-108)||(4342290-4342383)
chr2 (17-107)||(28193370-28193459)
chr2 (17-107)||(28193610-28193699)
chr2 (54-128)||(15962000-15962080)
chr2 (17-83)||(21213920-21213986)
chr2 (35-133)||(32197156-32197253)
chr2 (214-249)||(14280257-14280292)
chr2 (16-83)||(30166113-30166180)
chr2 (17-83)||(3976506-3976572)
chr2 (17-83)||(21214236-21214302)
chr2 (39-108)||(36161403-36161473)
chr2 (17-83)||(43169245-43169311)
chr2 (35-83)||(3977056-3977104)
chr2 (36-83)||(3976209-3976256)
chr2 (48-107)||(17326097-17326155)
chr2 (35-78)||(26847295-26847338)
chr2 (17-84)||(43195786-43195853)
chr2 (87-133)||(936992-937038)
chr2 (17-83)||(11969055-11969121)
chr2 (214-248)||(32810968-32811002)
chr2 (214-247)||(11349885-11349918)
chr2 (214-247)||(11350279-11350312)
chr2 (35-83)||(6183419-6183467)
chr2 (35-83)||(17325173-17325221)
chr2 (35-83)||(18901917-18901965)
chr2 (35-83)||(25441699-25441747)
chr2 (35-83)||(43688474-43688522)
chr2 (35-83)||(44266361-44266409)
[»] chr5 (34 HSPs)
chr5 (35-133)||(83863-83961)
chr5 (40-128)||(33040243-33040331)
chr5 (38-158)||(33040392-33040518)
chr5 (17-127)||(22196361-22196470)
chr5 (17-107)||(84069-84159)
chr5 (17-107)||(30329815-30329905)
chr5 (18-107)||(32395350-32395439)
chr5 (45-153)||(18541878-18541991)
chr5 (35-107)||(14769885-14769956)
chr5 (17-108)||(29396378-29396469)
chr5 (69-158)||(946811-946907)
chr5 (35-109)||(22196606-22196679)
chr5 (36-109)||(24792320-24792394)
chr5 (35-107)||(5095949-5096021)
chr5 (17-124)||(30330024-30330130)
chr5 (37-110)||(9850446-9850522)
chr5 (35-108)||(19439839-19439911)
chr5 (17-107)||(2471728-2471817)
chr5 (35-83)||(38131767-38131815)
chr5 (35-78)||(395375-395418)
chr5 (37-83)||(873751-873797)
chr5 (17-83)||(1028128-1028194)
chr5 (73-127)||(24792192-24792246)
chr5 (17-83)||(27760078-27760144)
chr5 (37-107)||(33040042-33040112)
chr5 (35-83)||(29432415-29432463)
chr5 (35-83)||(37995687-37995735)
chr5 (35-83)||(39668470-39668518)
chr5 (25-83)||(396263-396321)
chr5 (69-107)||(946722-946760)
chr5 (35-108)||(18541702-18541773)
chr5 (35-83)||(13843700-13843748)
chr5 (35-83)||(13844016-13844064)
chr5 (35-83)||(28009850-28009898)
[»] chr4 (40 HSPs)
chr4 (17-158)||(46528958-46529104)
chr4 (35-107)||(11290148-11290220)
chr4 (35-151)||(52810678-52810799)
chr4 (14-108)||(4026052-4026145)
chr4 (35-108)||(50868066-50868139)
chr4 (35-105)||(47845769-47845839)
chr4 (18-107)||(33912023-33912111)
chr4 (17-83)||(13254386-13254452)
chr4 (33-107)||(37288920-37288993)
chr4 (35-107)||(37097784-37097855)
chr4 (41-109)||(52810911-52810978)
chr4 (37-108)||(26941840-26941910)
chr4 (17-107)||(2016512-2016601)
chr4 (35-109)||(5427106-5427179)
chr4 (17-83)||(51469484-51469550)
chr4 (44-133)||(37288700-37288788)
chr4 (53-128)||(42901775-42901851)
chr4 (36-83)||(51470486-51470533)
chr4 (37-83)||(15665156-15665202)
chr4 (17-83)||(22867087-22867153)
chr4 (17-83)||(29669398-29669464)
chr4 (17-83)||(43798162-43798228)
chr4 (17-83)||(50858015-50858081)
chr4 (17-83)||(53740185-53740251)
chr4 (35-83)||(43972042-43972090)
chr4 (17-76)||(33797144-33797203)
chr4 (60-107)||(47846029-47846076)
chr4 (17-83)||(29669713-29669779)
chr4 (17-83)||(45426971-45427037)
chr4 (17-82)||(990551-990616)
chr4 (17-82)||(43972359-43972424)
chr4 (17-78)||(52827267-52827328)
chr4 (18-74)||(33629671-33629727)
chr4 (18-78)||(33629929-33629989)
chr4 (35-83)||(36558519-36558567)
chr4 (35-83)||(49544335-49544383)
chr4 (35-83)||(50858331-50858379)
chr4 (35-83)||(53738261-53738309)
chr4 (35-83)||(53739869-53739917)
chr4 (35-83)||(56509612-56509660)
[»] chr3 (38 HSPs)
chr3 (36-128)||(10450478-10450570)
chr3 (35-133)||(48511463-48511563)
chr3 (35-109)||(53966210-53966284)
chr3 (17-108)||(10450683-10450774)
chr3 (36-107)||(15820659-15820730)
chr3 (35-133)||(9180322-9180419)
chr3 (35-133)||(22666371-22666467)
chr3 (17-107)||(11244576-11244666)
chr3 (35-133)||(40769965-40770062)
chr3 (36-107)||(42190530-42190601)
chr3 (17-127)||(10453738-10453846)
chr3 (17-107)||(24453758-24453847)
chr3 (17-98)||(48511674-48511755)
chr3 (36-108)||(51734611-51734681)
chr3 (35-106)||(9179114-9179184)
chr3 (17-83)||(13769326-13769392)
chr3 (37-107)||(48837063-48837132)
chr3 (18-83)||(54369042-54369107)
chr3 (35-107)||(10856679-10856750)
chr3 (35-83)||(45443283-45443331)
chr3 (29-104)||(16045417-16045491)
chr3 (29-104)||(16060932-16061006)
chr3 (35-101)||(9178893-9178958)
chr3 (17-83)||(27219332-27219398)
chr3 (17-83)||(43101406-43101472)
chr3 (17-83)||(44573329-44573395)
chr3 (17-83)||(47833697-47833763)
chr3 (35-84)||(5321589-5321638)
chr3 (35-83)||(2800014-2800062)
chr3 (35-83)||(41380727-41380775)
chr3 (29-107)||(16051582-16051659)
chr3 (17-83)||(34715490-34715556)
chr3 (214-247)||(10450516-10450549)
chr3 (214-247)||(10450740-10450773)
chr3 (214-247)||(15820697-15820730)
chr3 (35-83)||(3985776-3985824)
chr3 (35-83)||(48685370-48685418)
chr3 (17-81)||(50203892-50203956)
[»] scaffold0012 (1 HSPs)
scaffold0012 (35-133)||(165738-165835)
[»] chr6 (24 HSPs)
chr6 (35-125)||(33396487-33396576)
chr6 (35-107)||(33396286-33396358)
chr6 (17-107)||(26842699-26842789)
chr6 (35-158)||(16193943-16194071)
chr6 (35-107)||(25183982-25184054)
chr6 (35-92)||(25184204-25184261)
chr6 (17-83)||(8144020-8144086)
chr6 (17-83)||(24055144-24055210)
chr6 (35-108)||(26339895-26339967)
chr6 (35-83)||(19753657-19753705)
chr6 (35-83)||(21067110-21067158)
chr6 (35-83)||(21088901-21088949)
chr6 (214-250)||(26842696-26842732)
chr6 (17-80)||(1744877-1744940)
chr6 (17-80)||(19054499-19054562)
chr6 (17-107)||(8427530-8427619)
chr6 (37-83)||(27577839-27577885)
chr6 (35-80)||(12134536-12134581)
chr6 (35-84)||(17096751-17096800)
chr6 (214-247)||(25183982-25184015)
chr6 (35-80)||(27443590-27443635)
chr6 (35-83)||(10733491-10733539)
chr6 (35-83)||(21043834-21043882)
chr6 (37-109)||(23591508-23591578)
[»] scaffold0166 (2 HSPs)
scaffold0166 (36-109)||(34703-34777)
scaffold0166 (73-127)||(34575-34629)
[»] scaffold0785 (2 HSPs)
scaffold0785 (69-122)||(2983-3035)
scaffold0785 (14-83)||(3152-3221)
[»] scaffold0003 (1 HSPs)
scaffold0003 (35-80)||(43726-43771)


Alignment Details
Target: chr8 (Bit Score: 470; Significance: 0; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 35 - 583
Target Start/End: Original strand, 20232450 - 20232999
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaacacacaccctcacgcttcagcccagcccc 134  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20232450 tttataaactcttctcaagaatctcatctatccgatgtgggactaaatcccacccgagtgttggccgctaacacacaccctcacgcttcagcccagcccc 20232549  T
Q  135 ctgaagcgtggacgatgcaagcccgacttgtacggttaggagtgcctcttttttataaactcttattcattaatcataaggactaaatcccacctgagtg 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  20232550 ctgaagcgtggacgatgcaagcccgacttgtacggttaggagtgcctcccttttataaactcttattcattaatcataaggactaaatcccacccgagtg 20232649  T
Q  235 ttggctgctaacaataagctcgtctgggacgtgtaattatttacagtatttatttgattttacttcattttttgatggtctcagaatcaaagttcaatat 334  Q
    || ||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20232650 ttagccactaacaataagctcgtctgggatgtgtaattatttacagtatttatttgattttacttcattttttgatggtctcagaatcaaagttcaatat 20232749  T
Q  335 atctgaactggctttttctttatatcaggtaaaagacgtagtagtggaagttgtggaaggagatgctagaaatgttctctgtgatgctgtggagaagcac 434  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  20232750 atctgaactagctttttctttatatcaggtaaaagacgtagtagtggaagttgtggatggagatgctagaaatgttctctgtgatgctgtggacaagcac 20232849  T
Q  435 catgcttcgattttggtcgtaggtagtcatggttatggagctataaaaaggtatgtgttcattcagatcccaattatcatgctattgcattgcgataata 534  Q
    |||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20232850 catgcttctattttggttgtaggtagtcatggttacggagctataaaaaggtatgtgttcattcagatcccaattatcatgctattgcattgcgataata 20232949  T
Q  535 gctttaaaggagtctgat-aatacttatcctcgtactttctagtattatc 583  Q
    |||||||||||||||||| ||||||||| || ||||||||||||||||||    
T  20232950 gctttaaaggagtctgataaatacttatactggtactttctagtattatc 20232999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 35 - 128
Target Start/End: Original strand, 38287790 - 38287882
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaacacacaccctcacgcttcagccc 128  Q
    ||||||||||||| |||||||||| |||||||| ||||||||||||||| || ||||||||||||| ||||||||| |||||||||||||||||    
T  38287790 tttataaactcttatcaagaatcctatctatccgatgtgggactaaatccca-ccgagtgttggcccctaacacaccccctcacgcttcagccc 38287882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 37 - 133
Target Start/End: Complemental strand, 8605539 - 8605444
Alignment:
Q  37 tataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaacacacaccctcacgcttcagcccagccc 133  Q
    |||||||||||||||||||||| || ||||| | ||| |||||||| ||||| ||||||||||||||||||||| ||||||||||||||||| ||||    
T  8605539 tataaactcttctcaagaatcctatttatccgacgtgagactaaatgtcacc-gagtgttggccgctaacacaccccctcacgcttcagcccggccc 8605444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 35 - 107
Target Start/End: Complemental strand, 18464121 - 18464049
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaaca 107  Q
    |||||||||||||||||||||||| |||||||  ||||||||||||||| |||||||||||||||||||||||    
T  18464121 tttataaactcttctcaagaatcctatctatctgatgtgggactaaatcccacccgagtgttggccgctaaca 18464049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 35 - 126
Target Start/End: Original strand, 17607267 - 17607356
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaacacacaccctcacgcttcagc 126  Q
    |||||||||||||| ||||||||| |||||||| ||||| ||||||||| ||| |||||||||||||||||||||| |||||||||||||||    
T  17607267 tttataaactcttcacaagaatcctatctatccgatgtgagactaaatc-cactcgagtgttggccgctaacacac-ccctcacgcttcagc 17607356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 14019877 - 14019787
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaaca 107  Q
    ||||||| || |||| | ||||||||||||||||||||| || |||||||| ||||||||||||||| ||||||||||||||| |||||||    
T  14019877 ggtgaggagtgcctcctctttataaactcttctcaagaaacctatctatccgatgtgggactaaatcccacccgagtgttggctgctaaca 14019787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 15711565 - 15711474
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaacaca 109  Q
    ||||||| || |||| | |||||||||||||||||||||||| |||||||| ||||||||||||||| || |||||||||||| |||||||||    
T  15711565 ggtgaggagtgcctcctctttataaactcttctcaagaatcctatctatccgatgtgggactaaatccca-ccgagtgttggctgctaacaca 15711474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 9596029 - 9596134
Alignment:
Q  18 gtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaacacacaccctca 117  Q
    |||||| || |||| | |||||||| | ||||||||||||| |||||||| |||||| |||||||| || |||||||||||||||||||||||  |||||    
T  9596029 gtgaggagtgcctcctctttataaaatattctcaagaatcctatctatccgatgtggaactaaatccca-ccgagtgttggccgctaacacacctcctca 9596127  T
Q  118 cgcttca 124  Q
     ||||||    
T  9596128 tgcttca 9596134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 8276600 - 8276552
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  8276600 tttataaactcttctcaagaatcctatctatccaatgtgggactaaatc 8276552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 35 - 107
Target Start/End: Complemental strand, 35908729 - 35908658
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaaca 107  Q
    ||||||||||||||||||| |||| ||||| || ||||||||||||||| || ||||||||||||||||||||    
T  35908729 tttataaactcttctcaagtatcctatctacccgatgtgggactaaatccca-ccgagtgttggccgctaaca 35908658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 35 - 127
Target Start/End: Original strand, 39587911 - 39588001
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaacacacaccctcacgcttcagcc 127  Q
    |||||||||||||||| ||||||| ||| |||  ||||||||||||||| |||  |||||||||| |||||||||| ||||||||||||||||    
T  39587911 tttataaactcttctctagaatcctatccatctgatgtgggactaaatc-cact-gagtgttggctgctaacacaccccctcacgcttcagcc 39588001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 35 - 107
Target Start/End: Original strand, 9596272 - 9596343
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaaca 107  Q
    |||||||||||||||||||||||  |||||||| || || ||||||||| || ||||||||||||| ||||||    
T  9596272 tttataaactcttctcaagaatcttatctatccgatatgagactaaatccca-ccgagtgttggccactaaca 9596343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 35 - 107
Target Start/End: Original strand, 38288017 - 38288088
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaaca 107  Q
    |||||||||||||||||| ||||| ||||||  || ||| |||||||||||| |||||||||||| |||||||    
T  38288017 tttataaactcttctcaaaaatcctatctatttaacgtgtgactaaatctca-ccgagtgttggctgctaaca 38288088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 18905925 - 18905859
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    ||||||| || |||| | |||||||||||||||||||| | | |||||||| |||||||||||||||    
T  18905925 ggtgaggagtgcctcctctttataaactcttctcaagagtgctatctatccgatgtgggactaaatc 18905859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 20298551 - 20298617
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    ||||||| || |||| | ||||||||||||||||||||||   ||||||| ||||||||||||||||    
T  20298551 ggtgaggagtgcctcctctttataaactcttctcaagaataatatctatcaaatgtgggactaaatc 20298617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 21085183 - 21085249
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    ||||||| || |||| | |||||||||||||||||||| | | |||||||| |||||||||||||||    
T  21085183 ggtgaggagtgcctcctctttataaactcttctcaagagtgctatctatccgatgtgggactaaatc 21085249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 32931470 - 32931404
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    ||||||| || |||| | ||||||||||||||||||||||   |||||||| |||||||||||||||    
T  32931470 ggtgaggagtgcctcctctttataaactcttctcaagaatgatatctatccgatgtgggactaaatc 32931404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 34248428 - 34248362
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    ||||||| || |||| | ||||||||||||| |||||| ||| ||||| ||||||||||||||||||    
T  34248428 ggtgaggagtgcctcctctttataaactcttatcaagagtcctatctaaccaatgtgggactaaatc 34248362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 78
Target Start/End: Complemental strand, 35561717 - 35561674
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggact 78  Q
    |||||||||||||||||||||||  |||||||| ||||||||||    
T  35561717 tttataaactcttctcaagaatcttatctatccgatgtgggact 35561674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 214 - 248
Target Start/End: Complemental strand, 14019820 - 14019786
Alignment:
Q  214 ggactaaatcccacctgagtgttggctgctaacaa 248  Q
    ||||||||||||||| |||||||||||||||||||    
T  14019820 ggactaaatcccacccgagtgttggctgctaacaa 14019786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 23027863 - 23027929
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    ||||||| || |||| | ||||||| |||||||||||| | | |||||||| |||||||||||||||    
T  23027863 ggtgaggagtgcctcctctttataagctcttctcaagagttctatctatcctatgtgggactaaatc 23027929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 34248146 - 34248080
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    ||||||| || |||| | ||||||||||||| |||||| ||| ||||| || |||||||||||||||    
T  34248146 ggtgaggagtgcctcctctttataaactcttatcaagagtcctatctaaccgatgtgggactaaatc 34248080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 14582281 - 14582233
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    ||||||||||||||||||| |||  || |||| ||||||||||||||||    
T  14582281 tttataaactcttctcaagtatcatatttatcaaatgtgggactaaatc 14582233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 23027558 - 23027606
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    |||||||||||||||||||| | | |||||||  |||||||||||||||    
T  23027558 tttataaactcttctcaagagttctatctatctgatgtgggactaaatc 23027606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 470; Significance: 0; HSPs: 44)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 35 - 583
Target Start/End: Original strand, 44314357 - 44314906
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaacacacaccctcacgcttcagcccagcccc 134  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44314357 tttataaactcttctcaagaatctcatctatccgatgtgggactaaatcccacccgagtgttggccgctaacacacaccctcacgcttcagcccagcccc 44314456  T
Q  135 ctgaagcgtggacgatgcaagcccgacttgtacggttaggagtgcctcttttttataaactcttattcattaatcataaggactaaatcccacctgagtg 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  44314457 ctgaagcgtggacgatgcaagcccgacttgtacggttaggagtgcctcccttttataaactcttattcattaatcataaggactaaatcccacccgagtg 44314556  T
Q  235 ttggctgctaacaataagctcgtctgggacgtgtaattatttacagtatttatttgattttacttcattttttgatggtctcagaatcaaagttcaatat 334  Q
    || ||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44314557 ttagccactaacaataagctcgtctgggatgtgtaattatttacagtatttatttgattttacttcattttttgatggtctcagaatcaaagttcaatat 44314656  T
Q  335 atctgaactggctttttctttatatcaggtaaaagacgtagtagtggaagttgtggaaggagatgctagaaatgttctctgtgatgctgtggagaagcac 434  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  44314657 atctgaactagctttttctttatatcaggtaaaagacgtagtagtggaagttgtggatggagatgctagaaatgttctctgtgatgctgtggacaagcac 44314756  T
Q  435 catgcttcgattttggtcgtaggtagtcatggttatggagctataaaaaggtatgtgttcattcagatcccaattatcatgctattgcattgcgataata 534  Q
    |||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44314757 catgcttctattttggttgtaggtagtcatggttacggagctataaaaaggtatgtgttcattcagatcccaattatcatgctattgcattgcgataata 44314856  T
Q  535 gctttaaaggagtctgat-aatacttatcctcgtactttctagtattatc 583  Q
    |||||||||||||||||| ||||||||| || ||||||||||||||||||    
T  44314857 gctttaaaggagtctgataaatacttatactggtactttctagtattatc 44314906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 35 - 133
Target Start/End: Original strand, 37755991 - 37756089
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaacacacaccctcacgcttcagcccagccc 133  Q
    |||||||||||||||||||| ||| |||||||| ||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||| ||||    
T  37755991 tttataaactcttctcaagattcctatctatccgatgtgggactaaatcccacccgagagttggccgctaacacaccccctcacgcttcagcccggccc 37756089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 35 - 152
Target Start/End: Original strand, 36270523 - 36270645
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaacacacaccctcacgcttcagcccagccc- 133  Q
    ||||||||||| |||||||||||| |||||||| ||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||| ||||     
T  36270523 tttataaactcgtctcaagaatcctatctatccgatgtgggactaaatccca-ccgagtgttgaccgctaacacacaccctcacgcttcagcccggccca 36270621  T
Q  134 -----cctgaagcgtggacgatgc 152  Q
         |||||||||||||||||||    
T  36270622 atgggcctgaagcgtggacgatgc 36270645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 17 - 128
Target Start/End: Original strand, 47346129 - 47346240
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaacacacaccctc 116  Q
    ||||||| || |||| | |||||||||||||||||||| ||| |||||||  ||||||||||||||| |||||||| ||||||||||||||||| |||||    
T  47346129 ggtgaggagtgcctcctctttataaactcttctcaagattcctatctatctgatgtgggactaaatcccacccgagagttggccgctaacacaccccctc 47346228  T
Q  117 acgcttcagccc 128  Q
    ||||||||||||    
T  47346229 acgcttcagccc 47346240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 17 - 158
Target Start/End: Complemental strand, 36495958 - 36495813
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaacacacaccctc 116  Q
    ||||||| || |||| | |||||||||| ||||||||||||| |||||||| ||||||||||||||| |||||||| |||||||||||||  |||||| |    
T  36495958 ggtgaggagtgcctcctctttataaactattctcaagaatcctatctatccgatgtgggactaaatcccacccgagagttggccgctaac--acaccccc 36495861  T
Q  117 acgcttcagcccagccc------cctgaagcgtggacgatgcaagccc 158  Q
    |||||||||||  ||||      |||||||| ||||||||||||||||    
T  36495860 acgcttcagcctggcccaatgggcctgaagcatggacgatgcaagccc 36495813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 35 - 107
Target Start/End: Complemental strand, 34748829 - 34748757
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaaca 107  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||    
T  34748829 tttataaactcttctcaagaatcctatctatccgatgtgggactaaatcccacccgagtgttggccgctaaca 34748757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 27585325 - 27585235
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaaca 107  Q
    ||||||| || |||| |||||||||||||||||||||||||| |||||||| ||||||||||||||| |||| |||||||||| |||||||    
T  27585325 ggtgaggagtgcctcctttttataaactcttctcaagaatcctatctatccgatgtgggactaaatcccacctgagtgttggctgctaaca 27585235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 40 - 128
Target Start/End: Original strand, 24240236 - 24240324
Alignment:
Q  40 aaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaacacacaccctcacgcttcagccc 128  Q
    ||||||||||||||| ||| |||||||| ||||||||||||||| |||| ||| |||||| |||||||||| |||||||||||||||||    
T  24240236 aaactcttctcaagattcctatctatccgatgtgggactaaatcccacctgagagttggctgctaacacaccccctcacgcttcagccc 24240324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 35 - 109
Target Start/End: Complemental strand, 33909188 - 33909114
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaacaca 109  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||| |||||||| |||||||    
T  33909188 tttataaactcttctcaagaatcctatctatccgatgtgggactaaatcccacccgagagttggccgttaacaca 33909114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 35 - 109
Target Start/End: Original strand, 39550031 - 39550104
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaacaca 109  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||| || ||||||||||||||||||||||    
T  39550031 tttataaactcttctcaagaatcctatctatccgatgtgggactaaatccca-ccgagtgttggccgctaacaca 39550104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 36270733 - 36270822
Alignment:
Q  18 gtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaaca 107  Q
    |||||| || |||| | ||||||||||| | |||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||    
T  36270733 gtgaggagtgcctcctctttataaactcctgtcaagaatcctatctatccaatgtgggacaaaatcccacccgagtgttggccgctaaca 36270822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 35 - 107
Target Start/End: Original strand, 37756217 - 37756289
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaaca 107  Q
    |||||||||||||||||||| ||| |||||||| ||||||||||||||| |||||||| ||||||||||||||    
T  37756217 tttataaactcttctcaagattcctatctatccgatgtgggactaaatcccacccgagagttggccgctaaca 37756289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 35 - 107
Target Start/End: Original strand, 37761965 - 37762037
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaaca 107  Q
    |||||||||||||||||||| ||| |||||||| ||||||||||||||| |||||||| ||||||||||||||    
T  37761965 tttataaactcttctcaagattcctatctatccgatgtgggactaaatcccacccgagagttggccgctaaca 37762037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 17 - 107
Target Start/End: Original strand, 34914955 - 34915045
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaaca 107  Q
    ||||||| || |||||| ||| ||||||||||||||||||||  ||||||| ||||||||||||||| |||||||||| |||| |||||||    
T  34914955 ggtgaggagtgcctcatctttgtaaactcttctcaagaatcctgtctatccgatgtgggactaaatcccacccgagtgctggctgctaaca 34915045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 36495735 - 36495645
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaaca 107  Q
    ||||||| || |||| | |||||||||| ||||||||||||| |||||||| ||||||||||||||  |||||||| ||||||||||||||    
T  36495735 ggtgaggagtgcctcctctttataaactattctcaagaatcctatctatccgatgtgggactaaatgccacccgagagttggccgctaaca 36495645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 17 - 107
Target Start/End: Original strand, 47346358 - 47346448
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaaca 107  Q
    ||||||| || |||| | |||||||||||||||||||| ||| |||| ||| ||||||||||||||| |||||||| ||||||||||||||    
T  47346358 ggtgaggagtgcctcctctttataaactcttctcaagattcctatctttccgatgtgggactaaatcccacccgagagttggccgctaaca 47346448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 35 - 128
Target Start/End: Complemental strand, 19843758 - 19843666
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaacacacaccctcacgcttcagccc 128  Q
    |||||||||||||||||||||||| |||||||  || |||||||||||| |   |||||||||||||||||||||| | |||||||||||||||    
T  19843758 tttataaactcttctcaagaatcctatctatctgatttgggactaaatc-ccttcgagtgttggccgctaacacactcgctcacgcttcagccc 19843666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 35 - 107
Target Start/End: Complemental strand, 20296314 - 20296243
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaaca 107  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||| | | |||||||||||||||||||    
T  20296314 tttataaactcttctcaagaatcctctctatccaatgtgggactaaatc-ccctcgagtgttggccgctaaca 20296243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 17 - 120
Target Start/End: Original strand, 36092427 - 36092528
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaacacacaccctc 116  Q
    ||||||| ||||||| | | |||||||||||||||||||||  |||||||||||||||||||||||| || | |||||||||  |||||||||| |||||    
T  36092427 ggtgaggagtacctcctctctataaactcttctcaagaatcatatctatccaatgtgggactaaatc-ca-ctgagtgttggttgctaacacaccccctc 36092524  T
Q  117 acgc 120  Q
    ||||    
T  36092525 acgc 36092528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 40 - 107
Target Start/End: Original strand, 24240448 - 24240515
Alignment:
Q  40 aaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaaca 107  Q
    |||||||||| |||| ||| |||||||| ||||||||||||||| |||||||| ||||||||||||||    
T  24240448 aaactcttcttaagattcctatctatccgatgtgggactaaatcccacccgagagttggccgctaaca 24240515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 43384315 - 43384381
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    ||||||| || |||| | |||||||||||||||||||||||| |||||||| |||||||||||||||    
T  43384315 ggtgaggagtgcctcctctttataaactcttctcaagaatcctatctatccgatgtgggactaaatc 43384381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 14 - 107
Target Start/End: Original strand, 22206310 - 22206402
Alignment:
Q  14 tatggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaaca 107  Q
    |||||||||| || |||| | |||||||||| ||||||||||||| |||||| | ||||||||||||||| || ||||||| | ||||||||||    
T  22206310 tatggtgaggagtgcctcctctttataaacttttctcaagaatcctatctattcgatgtgggactaaatccca-ccgagtgattgccgctaaca 22206402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 14 - 107
Target Start/End: Complemental strand, 22228429 - 22228337
Alignment:
Q  14 tatggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaaca 107  Q
    |||||||||| || |||| | |||||||||| ||||||||||||| |||||| | ||||||||||||||| || ||||||| | ||||||||||    
T  22228429 tatggtgaggagtgcctcctctttataaacttttctcaagaatcctatctattcgatgtgggactaaatccca-ccgagtgattgccgctaaca 22228337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 37 - 107
Target Start/End: Original strand, 36092654 - 36092722
Alignment:
Q  37 tataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaaca 107  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||  || |||||||||||| |||||||    
T  36092654 tataaactcttctcaagaatcctatctatccgatgtgggactaaat-aca-ccgagtgttggcggctaaca 36092722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 35 - 107
Target Start/End: Original strand, 37530976 - 37531050
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcaccc---gagtgttggccgctaaca 107  Q
    |||||||||||||||||||||||| |||||||| | ||||||||||||| |||||   |||||||||| |||||||    
T  37530976 tttataaactcttctcaagaatcctatctatccgacgtgggactaaatc-cacccagtgagtgttggctgctaaca 37531050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 35 - 110
Target Start/End: Original strand, 22686786 - 22686860
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaacacac 110  Q
    ||||||||||||| |||||||||| || ||||| |||||||| |||||| | | ||||||||| ||||||||||||    
T  22686786 tttataaactcttttcaagaatcctatttatccgatgtgggattaaatc-ccctcgagtgttgaccgctaacacac 22686860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 214 - 249
Target Start/End: Complemental strand, 27585268 - 27585233
Alignment:
Q  214 ggactaaatcccacctgagtgttggctgctaacaat 249  Q
    ||||||||||||||||||||||||||||||||||||    
T  27585268 ggactaaatcccacctgagtgttggctgctaacaat 27585233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 257302 - 257368
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    ||||||| || |||| | ||||||||||||||||||||||   |||||||| |||||||||||||||    
T  257302 ggtgaggagtgcctcctctttataaactcttctcaagaataatatctatccgatgtgggactaaatc 257368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 7135278 - 7135344
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    ||||||| || |||| | |||||||||||||||||||| ||| |||||||| ||||| |||||||||    
T  7135278 ggtgaggagtgcctcctctttataaactcttctcaagagtcctatctatccgatgtgtgactaaatc 7135344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 1663657 - 1663706
Alignment:
Q  34 ttttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    ||||||||||||||||||||| | | |||||||| |||||||||||||||    
T  1663657 ttttataaactcttctcaagagtgctatctatccgatgtgggactaaatc 1663706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 107
Target Start/End: Complemental strand, 19843530 - 19843464
Alignment:
Q  40 aaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaaca 107  Q
    ||||||||||||| ||||| |||||||| || ||||||| |||| | | |||||||||||||||||||    
T  19843530 aaactcttctcaataatcctatctatccgatttgggacttaatc-ccctcgagtgttggccgctaaca 19843464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 1661226 - 1661292
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    ||||||| || |||| | |||||||||||||||||||| |   |||||||| |||||||||||||||    
T  1661226 ggtgaggagtgcctcctctttataaactcttctcaagagttttatctatccgatgtgggactaaatc 1661292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 28910101 - 28910035
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    ||||||| || |||| | |||||||||||||| ||||| ||| |||||||  |||||||||||||||    
T  28910101 ggtgaggagtgcctcctctttataaactcttcccaagagtcctatctatcttatgtgggactaaatc 28910035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 37272080 - 37272146
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    ||||||| || |||| | ||||||||||||| |||||| ||| ||||| || |||||||||||||||    
T  37272080 ggtgaggagtgcctcctctttataaactcttatcaagagtcctatctaaccgatgtgggactaaatc 37272146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 35 - 81
Target Start/End: Original strand, 40121992 - 40122038
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaa 81  Q
    |||||||||||||||||||| | | |||||||| |||||||||||||    
T  40121992 tttataaactcttctcaagagtactatctatccgatgtgggactaaa 40122038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 41670652 - 41670586
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    ||||||| || |||| | |||||||||||||||||||| | | |||||| | |||||||||||||||    
T  41670652 ggtgaggagtgcctcctctttataaactcttctcaagagtactatctattcgatgtgggactaaatc 41670586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 14991544 - 14991593
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatc 66  Q
    ||||||| || |||| | |||||||||||||||||||||||| |||||||    
T  14991544 ggtgaggagtgcctcctctttataaactcttctcaagaatcctatctatc 14991593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 15421155 - 15421204
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatc 66  Q
    ||||||| || |||| | |||||||||||||||||||||||| |||||||    
T  15421155 ggtgaggagtgcctcctctttataaactcttctcaagaatcctatctatc 15421204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 247
Target Start/End: Original strand, 24240270 - 24240303
Alignment:
Q  214 ggactaaatcccacctgagtgttggctgctaaca 247  Q
    ||||||||||||||||||| ||||||||||||||    
T  24240270 ggactaaatcccacctgagagttggctgctaaca 24240303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 198
Target Start/End: Complemental strand, 27585332 - 27585295
Alignment:
Q  161 cttgtacggttaggagtgcctcttttttataaactctt 198  Q
    |||||||||| ||||||||||| |||||||||||||||    
T  27585332 cttgtacggtgaggagtgcctcctttttataaactctt 27585295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 158 - 198
Target Start/End: Original strand, 14991534 - 14991574
Alignment:
Q  158 cgacttgtacggttaggagtgcctcttttttataaactctt 198  Q
    ||||||||||||| ||||||||||| | |||||||||||||    
T  14991534 cgacttgtacggtgaggagtgcctcctctttataaactctt 14991574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 158 - 198
Target Start/End: Original strand, 15421145 - 15421185
Alignment:
Q  158 cgacttgtacggttaggagtgcctcttttttataaactctt 198  Q
    ||||||||||||| ||||||||||| | |||||||||||||    
T  15421145 cgacttgtacggtgaggagtgcctcctctttataaactctt 15421185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 30 - 103
Target Start/End: Original strand, 27729522 - 27729598
Alignment:
Q  30 tcatttttataaactcttctcaagaatc----ccatctatccaatgtgggactaaatctcacccgagtgttggccgct 103  Q
    |||| |||||||||||||| ||| ||||    | |||||||| ||||||||||||||| || ||||||||||||||||    
T  27729522 tcatctttataaactcttcccaataatcctatctatctatccgatgtgggactaaatccca-ccgagtgttggccgct 27729598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 43167946 - 43167994
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    |||||||||||||||||||| | | |||||||| || ||||||||||||    
T  43167946 tttataaactcttctcaagagtgctatctatccgatttgggactaaatc 43167994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 8e-38; HSPs: 39)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 17 - 133
Target Start/End: Complemental strand, 17295047 - 17294931
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaacacacaccctc 116  Q
    ||||||| || |||| | |||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||    
T  17295047 ggtgaggagtgcctcctctttataaactcttctcaagaatcctatctatccgatgtgggactaaatcccacccgagtgttggccgctaacacaccccctc 17294948  T
Q  117 acgcttcagcccagccc 133  Q
    |||||| ||||||||||    
T  17294947 acgctttagcccagccc 17294931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 29228743 - 29228628
Alignment:
Q  18 gtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaacacacaccctca 117  Q
    |||||| || |||| | |||||||||||||||||||| ||| |||||||| ||||||||||||||| |||||||| ||||||||||||||||| ||||||    
T  29228743 gtgaggagtgcctcctctttataaactcttctcaagattcctatctatccgatgtgggactaaatcccacccgagagttggccgctaacacaccccctca 29228644  T
Q  118 cgcttcagcccagccc 133  Q
    ||||||||||| ||||    
T  29228643 cgcttcagcccggccc 29228628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 50 - 133
Target Start/End: Complemental strand, 17294903 - 17294820
Alignment:
Q  50 caagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaacacacaccctcacgcttcagcccagccc 133  Q
    ||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  17294903 caagaatcctatctatccgatgtgggactaaatcccacccgagtgttggccgctaacacaccccctcacgctttagcccagccc 17294820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 35 - 128
Target Start/End: Original strand, 30604513 - 30604606
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaacacacaccctcacgcttcagccc 128  Q
    |||||||||| ||||||||| ||| |||||||| ||||||||||||||| |||||||| |||| |||||||||||| |||||||||||||||||    
T  30604513 tttataaactattctcaagattcctatctatccgatgtgggactaaatcccacccgagagttgaccgctaacacaccccctcacgcttcagccc 30604606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 36 - 128
Target Start/End: Original strand, 4187336 - 4187428
Alignment:
Q  36 ttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaacacacaccctcacgcttcagccc 128  Q
    ||||||||||||||||||| ||| |||||||| ||||||||||||||| ||| |||| ||||||||||||||||| ||||||| |||||||||    
T  4187336 ttataaactcttctcaagattcctatctatccgatgtgggactaaatcccactcgagagttggccgctaacacaccccctcacacttcagccc 4187428  T

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Target: chr1; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 359 - 489
Target Start/End: Complemental strand, 39637581 - 39637451
Alignment:
Q  359 tcaggtaaaagacgtagtagtggaagttgtggaaggagatgctagaaatgttctctgtgatgctgtggagaagcaccatgcttcgattttggtcgtaggt 458  Q
    ||||||||| || ||| |||| || || |||||||| |||||||||||||||||||||||| | ||||| ||| ||| |||||| || ||||| || |||    
T  39637581 tcaggtaaatgatgtaatagtagaggtggtggaaggtgatgctagaaatgttctctgtgatacagtggaaaagtaccgtgcttcaatcttggttgtgggt 39637482  T
Q  459 agtcatggttatggagctataaaaaggtatg 489  Q
    ||||| |||||||| ||||||||||||||||    
T  39637481 agtcacggttatggggctataaaaaggtatg 39637451  T

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Target: chr1; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 359 - 489
Target Start/End: Complemental strand, 39646249 - 39646119
Alignment:
Q  359 tcaggtaaaagacgtagtagtggaagttgtggaaggagatgctagaaatgttctctgtgatgctgtggagaagcaccatgcttcgattttggtcgtaggt 458  Q
    ||||||||| || ||| |||| || || |||||||| |||||||||||||||||||||||| | ||||| ||| ||| |||||| || ||||| || |||    
T  39646249 tcaggtaaatgatgtaatagtagaggtggtggaaggtgatgctagaaatgttctctgtgatacagtggaaaagtaccgtgcttcaatcttggttgtgggt 39646150  T
Q  459 agtcatggttatggagctataaaaaggtatg 489  Q
    ||||| |||||||| ||||||||||||||||    
T  39646149 agtcacggttatggggctataaaaaggtatg 39646119  T

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Target: chr1; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 36 - 109
Target Start/End: Complemental strand, 51722303 - 51722230
Alignment:
Q  36 ttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaacaca 109  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||| |||||||||    
T  51722303 ttataaactcttctcaagaatcctatctatccgatgtgggactaaatcccacccgagtgttggctgctaacaca 51722230  T

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Target: chr1; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 49 - 129
Target Start/End: Original strand, 31411425 - 31411505
Alignment:
Q  49 tcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaacacacaccctcacgcttcagccca 129  Q
    |||||||||| |||||||| ||||| ||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||    
T  31411425 tcaagaatcctatctatccgatgtgagactaaatcccacccgagtgttggtcgctaacacaccccctcacgcttcagccca 31411505  T

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Target: chr1; HSP #10
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 28 - 107
Target Start/End: Complemental strand, 45443278 - 45443200
Alignment:
Q  28 cctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaaca 107  Q
    |||||| |||||||||||||||||||||||| |||||||| ||||||||||||||| || ||||||||||||||||||||    
T  45443278 cctcatctttataaactcttctcaagaatcctatctatccgatgtgggactaaatccca-ccgagtgttggccgctaaca 45443200  T

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Target: chr1; HSP #11
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 17 - 107
Target Start/End: Original strand, 31411595 - 31411685
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaaca 107  Q
    |||||| ||| |||| ||||||||||||||| |||||||||| |||||||  ||||||||||||||| |||||||||||||||| ||||||    
T  31411595 ggtgagatgtgcctcctttttataaactcttttcaagaatcctatctatctgatgtgggactaaatcccacccgagtgttggccactaaca 31411685  T

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Target: chr1; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 36 - 107
Target Start/End: Original strand, 4187567 - 4187638
Alignment:
Q  36 ttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaaca 107  Q
    ||||||||||||||||||| ||| |||||||| ||||||||||||||| |||||||| ||||||||||||||    
T  4187567 ttataaactcttctcaagattcctatctatccgatgtgggactaaatcccacccgagagttggccgctaaca 4187638  T

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Target: chr1; HSP #13
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 29228517 - 29228427
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaaca 107  Q
    ||||||| || |||| | |||||||||||||||||||| ||| |||||||| ||||||| ||||||| |||||||| ||||||||||||||    
T  29228517 ggtgaggagtgcctcctctttataaactcttctcaagattcctatctatccgatgtgggtctaaatcccacccgagagttggccgctaaca 29228427  T

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Target: chr1; HSP #14
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 17 - 107
Target Start/End: Original strand, 33562162 - 33562252
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaaca 107  Q
    ||||||| || |||| | ||||||| ||||| |||||||||| |||||||| ||||||||||||| | |||||||||||||||||||||||    
T  33562162 ggtgaggagtgcctcctctttataacctcttttcaagaatcctatctatccgatgtgggactaaaacccacccgagtgttggccgctaaca 33562252  T

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Target: chr1; HSP #15
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 35 - 107
Target Start/End: Original strand, 29383676 - 29383747
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaaca 107  Q
    ||||||||||||||||||| |||  |||||||| ||||||||||||||| |||||||||||||||||||||||    
T  29383676 tttataaactcttctcaagtatcttatctatccgatgtgggactaaatc-cacccgagtgttggccgctaaca 29383747  T

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Target: chr1; HSP #16
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 49 - 158
Target Start/End: Complemental strand, 45858916 - 45858802
Alignment:
Q  49 tcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaacacacaccctcacgcttcagcccagccc------cctgaagcg 142  Q
    |||||||||| |||||||| ||||| ||||||||| | | |||||||||||||||||||||| | ||||||||||||||| ||||      |||||| ||    
T  45858916 tcaagaatcctatctatccgatgtgagactaaatccc-ctcgagtgttggccgctaacacaccctctcacgcttcagcccggcccaatgggcctgaaacg 45858818  T
Q  143 tggacgatgcaagccc 158  Q
    ||||||||||||||||    
T  45858817 tggacgatgcaagccc 45858802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 18585107 - 18585018
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaaca 107  Q
    ||||||| || |||| | |||||||| ||||||||||||||| |||||||| ||||||||||||||| || |||||||||||| |||||||    
T  18585107 ggtgaggagtccctcctctttataaaatcttctcaagaatcctatctatccgatgtgggactaaatccca-ccgagtgttggctgctaaca 18585018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 45858724 - 45858635
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaaca 107  Q
    ||||||| || |||| | |||||||||||||||||||||||| |||||||| ||||||||||||||| | |  ||||||||||||||||||    
T  45858724 ggtgaggagtgcctcctctttataaactcttctcaagaatcctatctatccgatgtgggactaaatc-cccatgagtgttggccgctaaca 45858635  T

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Target: chr1; HSP #19
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 35 - 108
Target Start/End: Original strand, 40521546 - 40521618
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaacac 108  Q
    |||||||||||||||||||||||  |||||||| ||||||||||||||| | | ||||||||||||||||||||    
T  40521546 tttataaactcttctcaagaatcttatctatccgatgtgggactaaatcac-ctcgagtgttggccgctaacac 40521618  T

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Target: chr1; HSP #20
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 12287917 - 12287828
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaaca 107  Q
    ||||||| || |||| | ||||||| ||||| |||||||||| |||||||| ||||||||||||||| || ||||||||||||| ||||||    
T  12287917 ggtgaggagtgcctcctctttataacctcttttcaagaatcctatctatccgatgtgggactaaatccca-ccgagtgttggccactaaca 12287828  T

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Target: chr1; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 106
Target Start/End: Original strand, 27958082 - 27958170
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaac 106  Q
    ||||||| || |||| | |||||||||||||||||||||||| ||||||| |||| ||||||||||| |  |||||||||||| ||||||    
T  27958082 ggtgaggagtgcctcctctttataaactcttctcaagaatcctatctatctaatgcgggactaaatc-cctccgagtgttggctgctaac 27958170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 35 - 107
Target Start/End: Original strand, 40642829 - 40642903
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcaccc---gagtgttggccgctaaca 107  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||| |||||   |||||||||| |||||||    
T  40642829 tttataaactcttctcaagaatcctatctatccgatgtgggactaaatc-cacccattgagtgttggctgctaaca 40642903  T

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Target: chr1; HSP #23
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 28509440 - 28509488
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||    
T  28509440 tttataaactcttctcaagaatcctatctatccgatgtgggactaaatc 28509488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 2697366 - 2697432
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    ||||||| || |||| | |||||||||||||||||||| ||| |||||||| |||||||||||||||    
T  2697366 ggtgaggagtgcctcctctttataaactcttctcaagagtcctatctatccgatgtgggactaaatc 2697432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 4022160 - 4022226
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    ||||||| || |||| | |||||||||||||||||||| ||| |||||||| |||||||||||||||    
T  4022160 ggtgaggagtgcctcctctttataaactcttctcaagagtcctatctatccgatgtgggactaaatc 4022226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 19937078 - 19937144
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    ||||||| || |||| | |||||||||||||||||||||| | |||||||| |||||||||||||||    
T  19937078 ggtgaggagtgcctcctctttataaactcttctcaagaattctatctatccgatgtgggactaaatc 19937144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 35 - 125
Target Start/End: Original strand, 27957862 - 27957950
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaacacacaccctcacgcttcag 125  Q
    |||||||||| |||||||||||||||||||||  ||| ||||||||||| |  || |||||||||| |||| |||| ||||||||||||||    
T  27957862 tttataaacttttctcaagaatcccatctatcagatgcgggactaaatc-cctccaagtgttggccactaa-acaccccctcacgcttcag 27957950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 8520128 - 8520194
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    ||||||| || |||| | |||||||||||||||||||| | | |||||||| |||||||||||||||    
T  8520128 ggtgaggagtgcctcttctttataaactcttctcaagagtgctatctatccgatgtgggactaaatc 8520194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 17419856 - 17419790
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    ||||||| || |||| | |||||||||||||||||||| | | |||||||| |||||||||||||||    
T  17419856 ggtgaggagtgcctcctctttataaactcttctcaagagtgctatctatccgatgtgggactaaatc 17419790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 38474352 - 38474286
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    ||||||| || |||| | ||||||||||||| |||||||||| |||||||| |||| ||||||||||    
T  38474352 ggtgaggagtgcctcctctttataaactcttgtcaagaatcctatctatccgatgtaggactaaatc 38474286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 20208137 - 20208183
Alignment:
Q  37 tataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    ||||||||||| |||||||||  |||||||| |||||||||||||||    
T  20208137 tataaactcttttcaagaatcatatctatccgatgtgggactaaatc 20208183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 20208436 - 20208482
Alignment:
Q  37 tataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    ||||||||||| |||||||||  |||||||| |||||||||||||||    
T  20208436 tataaactcttttcaagaatcatatctatccgatgtgggactaaatc 20208482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 31305780 - 31305714
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    ||||||| || |||| | |||||||||||||||||||| | | |||||||  |||||||||||||||    
T  31305780 ggtgaggagtgcctcctctttataaactcttctcaagagtgctatctatcggatgtgggactaaatc 31305714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 33342313 - 33342374
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggact 78  Q
    |||||||| |||||| | |||||| ||||||||||||| || ||||||||  ||||||||||    
T  33342313 ggtgaggtttacctcctctttatatactcttctcaagagtctcatctatctgatgtgggact 33342374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 198
Target Start/End: Complemental strand, 45443296 - 45443259
Alignment:
Q  161 cttgtacggttaggagtgcctcttttttataaactctt 198  Q
    |||||||||||||||||||||| | |||||||||||||    
T  45443296 cttgtacggttaggagtgcctcatctttataaactctt 45443259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 198
Target Start/End: Complemental strand, 45858735 - 45858694
Alignment:
Q  157 ccgacttgtacggttaggagtgcctcttttttataaactctt 198  Q
    |||||||||||||| ||||||||||| | |||||||||||||    
T  45858735 ccgacttgtacggtgaggagtgcctcctctttataaactctt 45858694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 247
Target Start/End: Complemental strand, 51722265 - 51722232
Alignment:
Q  214 ggactaaatcccacctgagtgttggctgctaaca 247  Q
    ||||||||||||||| ||||||||||||||||||    
T  51722265 ggactaaatcccacccgagtgttggctgctaaca 51722232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 161 - 200
Target Start/End: Original strand, 13356944 - 13356984
Alignment:
Q  161 cttgtacggttaggagtgcct-cttttttataaactcttat 200  Q
    |||||| |||||||||||||| |||||||||||||||||||    
T  13356944 cttgtaaggttaggagtgcctccttttttataaactcttat 13356984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 37600923 - 37600875
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    |||||||||||||||||||| |   |||||||||||| |||||||||||    
T  37600923 tttataaactcttctcaagagtgttatctatccaatgagggactaaatc 37600875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 5e-33; HSPs: 41)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 17 - 133
Target Start/End: Original strand, 11349828 - 11349944
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaacacacaccctc 116  Q
    ||||||| || |||| | ||||||||||||||||||||| || |||||||| ||||||||||||||| ||||||||||||||| |||||||||| |||||    
T  11349828 ggtgaggagtgcctcctctttataaactcttctcaagaaacctatctatccgatgtgggactaaatcccacccgagtgttggctgctaacacaccccctc 11349927  T
Q  117 acgcttcagcccagccc 133  Q
    ||||||| |||||||||    
T  11349928 acgcttcggcccagccc 11349944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 17 - 158
Target Start/End: Original strand, 10861869 - 10862015
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaacacacaccctc 116  Q
    ||||||| || |||| | |||||||||||||||||||||||| || |||||||| |||||||||||| | | |||||||||||||||||||||| |||||    
T  10861869 ggtgaggagtgcctcctctttataaactcttctcaagaatcctatatatccaatatgggactaaatc-ccctcgagtgttggccgctaacacaccccctc 10861967  T
Q  117 acgcttcagcccagccc------cctgaagcgtggacgatgcaagccc 158  Q
    ||||||||||||  |||      |||||||||||||||||||||||||    
T  10861968 acgcttcagcccgacccaatgggcctgaagcgtggacgatgcaagccc 10862015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 17 - 133
Target Start/End: Original strand, 11350222 - 11350338
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaacacacaccctc 116  Q
    ||||||| || |||| | ||||||||||||||||||||| || |||||||| || |||||||||||| ||||||||||||||| |||||||| | || ||    
T  11350222 ggtgaggagtgcctcctctttataaactcttctcaagaaacctatctatccgatatgggactaaatcccacccgagtgttggctgctaacaccccccgtc 11350321  T
Q  117 acgcttcagcccagccc 133  Q
    |||||||||||||||||    
T  11350322 acgcttcagcccagccc 11350338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 17 - 128
Target Start/End: Original strand, 15961835 - 15961946
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaacacacaccctc 116  Q
    ||||||| || |||| | ||||||||   ||||||||| ||| |||||||| ||||||||||||||| |||||||| ||||||||||||||||| |||||    
T  15961835 ggtgaggagtgcctcctctttataaaagattctcaagattcctatctatccgatgtgggactaaatcccacccgagagttggccgctaacacaccccctc 15961934  T
Q  117 acgcttcagccc 128  Q
    ||||||||||||    
T  15961935 acgcttcagccc 15961946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 35 - 107
Target Start/End: Complemental strand, 14280331 - 14280259
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaaca 107  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||| |||| |||||||||| |||||||    
T  14280331 tttataaactcttctcatgaatcctatctatccaatgtgggactaaatcccacctgagtgttggctgctaaca 14280259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 35 - 133
Target Start/End: Complemental strand, 10862357 - 10862260
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaacacacaccctcacgcttcagcccagccc 133  Q
    ||||||||||||||| || ||||  |||||||| ||||||||||||||| | | |||||||||||||||||||||| |||| |||||||||||| ||||    
T  10862357 tttataaactcttctaaaaaatcttatctatccgatgtgggactaaatccc-ctcgagtgttggccgctaacacacccccttacgcttcagcccggccc 10862260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 17 - 107
Target Start/End: Original strand, 15962192 - 15962282
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaaca 107  Q
    ||||||| || |||| | |||||||||| ||||||||| ||| |||||||| ||||||||||||||| |||||||| ||||||||||||||    
T  15962192 ggtgaggagtgcctcctctttataaactattctcaagattcctatctatccgatgtgggactaaatcccacccgagagttggccgctaaca 15962282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 107
Target Start/End: Complemental strand, 39420765 - 39420676
Alignment:
Q  18 gtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaaca 107  Q
    |||||| || |||| | |||||||||||||||||| | ||| |||||||| ||||||||||||||| |||||||| ||||||||||||||    
T  39420765 gtgaggagtgcctcctctttataaactcttctcaaaattcctatctatccgatgtgggactaaatcccacccgagagttggccgctaaca 39420676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 35 - 107
Target Start/End: Original strand, 4506093 - 4506164
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaaca 107  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||| || |||||||||||| |||||||    
T  4506093 tttataaactcttctcaagaatcctatctatccgatgtgggactaaatccca-ccgagtgttggcagctaaca 4506164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 35 - 107
Target Start/End: Original strand, 10862111 - 10862182
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaaca 107  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||| | | |||||||||||||||||||    
T  10862111 tttataaactcttctcaagaatcctatctatccgatgtgggactaaatc-ccctcgagtgttggccgctaaca 10862182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 35 - 107
Target Start/End: Original strand, 32810929 - 32811001
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaaca 107  Q
    ||||||||||||| |||||||||| |||||||| ||| ||||||||||| ||||||||||||||| |||||||    
T  32810929 tttataaactcttatcaagaatcctatctatccgatgcgggactaaatcccacccgagtgttggctgctaaca 32811001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 35 - 106
Target Start/End: Complemental strand, 936863 - 936792
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaac 106  Q
    |||||||||||||||||||| ||| |||||||| ||||| ||||||||| |||||||| |||||||||||||    
T  936863 tttataaactcttctcaagattcctatctatccgatgtgagactaaatcccacccgagagttggccgctaac 936792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 17 - 107
Target Start/End: Original strand, 33532771 - 33532860
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaaca 107  Q
    ||||||| || |||| | |||||||||||||||||||||||| |||||||| ||||||||||||||| | | |||||||||||| ||||||    
T  33532771 ggtgaggagtgcctcctctttataaactcttctcaagaatcctatctatccgatgtgggactaaatc-ccctcgagtgttggccactaaca 33532860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 14 - 108
Target Start/End: Original strand, 4342290 - 4342383
Alignment:
Q  14 tatggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaacac 108  Q
    ||||||||||| | |||| | ||||| |||||| ||||||||| | |||||||| ||||||||||||||| || | |||||||||||||||||||    
T  4342290 tatggtgaggtctgcctcctctttattaactctcctcaagaattctatctatccgatgtgggactaaatccca-ctgagtgttggccgctaacac 4342383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 17 - 107
Target Start/End: Original strand, 28193370 - 28193459
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaaca 107  Q
    ||||||| || |||| | |||||||||||||||||||||||| |||||||| ||||| ||||||||| | | ||||||||||||| |||||    
T  28193370 ggtgaggagtgcctcctatttataaactcttctcaagaatcctatctatccgatgtgagactaaatc-ccctcgagtgttggccgataaca 28193459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 17 - 107
Target Start/End: Original strand, 28193610 - 28193699
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaaca 107  Q
    ||||||| || |||| | |||||||| ||||||||||||||| |||||||  ||||||||||||||| | | |||||||||||||||||||    
T  28193610 ggtgaggagtgcctcctctttataaaatcttctcaagaatcctatctatctgatgtgggactaaatc-ccctcgagtgttggccgctaaca 28193699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 54 - 128
Target Start/End: Original strand, 15962000 - 15962080
Alignment:
Q  54 aatcccatctatccaatgtgggactaaatctcacccgagtgttggccg------ctaacacacaccctcacgcttcagccc 128  Q
    ||||| |||||||||||||||||||||||| |||||||| ||||||||      ||||||||| |||||||||||||||||    
T  15962000 aatcctatctatccaatgtgggactaaatcccacccgagagttggccgctaagtctaacacaccccctcacgcttcagccc 15962080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 21213920 - 21213986
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    ||||||| || |||| | |||||||||||||||||||| | | ||||||||||||||||||||||||    
T  21213920 ggtgaggagtgcctcctctttataaactcttctcaagagtactatctatccaatgtgggactaaatc 21213986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 35 - 133
Target Start/End: Complemental strand, 32197253 - 32197156
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaacacacaccctcacgcttcagcccagccc 133  Q
    |||||||| |||| || ||||||| || |||   ||||||||||||||| || | |||||||||||||||||| || ||||||||||||||||| ||||    
T  32197253 tttataaattcttttcgagaatcctatatataagatgtgggactaaatcccatc-gagtgttggccgctaacataccccctcacgcttcagcccggccc 32197156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 214 - 249
Target Start/End: Complemental strand, 14280292 - 14280257
Alignment:
Q  214 ggactaaatcccacctgagtgttggctgctaacaat 249  Q
    ||||||||||||||||||||||||||||||||||||    
T  14280292 ggactaaatcccacctgagtgttggctgctaacaat 14280257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 30166113 - 30166180
Alignment:
Q  16 tggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    |||||||| || |||| | |||||||||||||||||||| | | |||||||| |||||||||||||||    
T  30166113 tggtgaggagtgcctcttctttataaactcttctcaagagtgctatctatccgatgtgggactaaatc 30166180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 3976506 - 3976572
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    ||||||| || |||| | ||||||||||||||||||||||   |||||||| |||||||||||||||    
T  3976506 ggtgaggagtgcctcctctttataaactcttctcaagaatattatctatccgatgtgggactaaatc 3976572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 21214236 - 21214302
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    ||||||| || |||| | |||||||||||||||||||| | | ||||||| ||||||||||||||||    
T  21214236 ggtgaggagtgcctcctctttataaactcttctcaagagtgctatctatctaatgtgggactaaatc 21214302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 108
Target Start/End: Original strand, 36161403 - 36161473
Alignment:
Q  39 taaactcttctcaagaatcccatct-atccaatgtgggactaaatctcacccgagtgttggccgctaacac 108  Q
    |||||||||||||||||||| |||| |||| ||||||||||||||| || | ||| ||||||||| |||||    
T  36161403 taaactcttctcaagaatcctatcttatccgatgtgggactaaatcccagctgagagttggccgccaacac 36161473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 43169311 - 43169245
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    ||||||| || |||| | |||||||||||||||||||| | | |||||||| |||||||||||||||    
T  43169311 ggtgaggagtgcctcctctttataaactcttctcaagagtactatctatccgatgtgggactaaatc 43169245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 3977056 - 3977104
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    |||||||||||||||||||| | | |||||||| |||||||||||||||    
T  3977056 tttataaactcttctcaagagtactatctatccgatgtgggactaaatc 3977104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 83
Target Start/End: Original strand, 3976209 - 3976256
Alignment:
Q  36 ttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    ||||||||||||||||||| | | |||||||| |||||||||||||||    
T  3976209 ttataaactcttctcaagagtactatctatccgatgtgggactaaatc 3976256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 107
Target Start/End: Original strand, 17326097 - 17326155
Alignment:
Q  48 ctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaaca 107  Q
    ||||||||||| |||||||  |||||||||||||||||| |  |||||||||||||||||    
T  17326097 ctcaagaatcctatctatcagatgtgggactaaatctca-ctaagtgttggccgctaaca 17326155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 78
Target Start/End: Original strand, 26847295 - 26847338
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggact 78  Q
    ||||||||||||| |||||| ||| |||||||||||||||||||    
T  26847295 tttataaactcttatcaagagtcctatctatccaatgtgggact 26847338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 43195853 - 43195786
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatct 84  Q
    ||||||| || |||| | |||||||||||||||||||| | | |||||||  ||||||||||||||||    
T  43195853 ggtgaggagtgcctcctctttataaactcttctcaagagtactatctatctgatgtgggactaaatct 43195786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 133
Target Start/End: Complemental strand, 937038 - 936992
Alignment:
Q  87 cccgagtgttggccgctaacacacaccctcacgcttcagcccagccc 133  Q
    |||||| ||||||||| ||||||| ||||||||||||||||| ||||    
T  937038 cccgagagttggccgccaacacaccccctcacgcttcagcccggccc 936992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 11969121 - 11969055
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    ||||||| || |||| | |||||||||||||||||||| | | |||||||| | |||||||||||||    
T  11969121 ggtgaggagtgcctcctctttataaactcttctcaagagtactatctatccgacgtgggactaaatc 11969055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 214 - 248
Target Start/End: Original strand, 32810968 - 32811002
Alignment:
Q  214 ggactaaatcccacctgagtgttggctgctaacaa 248  Q
    ||||||||||||||| |||||||||||||||||||    
T  32810968 ggactaaatcccacccgagtgttggctgctaacaa 32811002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 247
Target Start/End: Original strand, 11349885 - 11349918
Alignment:
Q  214 ggactaaatcccacctgagtgttggctgctaaca 247  Q
    ||||||||||||||| ||||||||||||||||||    
T  11349885 ggactaaatcccacccgagtgttggctgctaaca 11349918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 247
Target Start/End: Original strand, 11350279 - 11350312
Alignment:
Q  214 ggactaaatcccacctgagtgttggctgctaaca 247  Q
    ||||||||||||||| ||||||||||||||||||    
T  11350279 ggactaaatcccacccgagtgttggctgctaaca 11350312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 6183419 - 6183467
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    |||||||||||||||||||| | | |||||||| |||||||| ||||||    
T  6183419 tttataaactcttctcaagagtactatctatccgatgtgggattaaatc 6183467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 17325221 - 17325173
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    |||||||| |||||| |||||||| |||||||  |||||||||||||||    
T  17325221 tttataaattcttcttaagaatcctatctatcagatgtgggactaaatc 17325173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 18901917 - 18901965
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    ||||||||||||| |||||| ||  |||||||| |||||||||||||||    
T  18901917 tttataaactcttttcaagagtcttatctatccgatgtgggactaaatc 18901965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 25441747 - 25441699
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    |||||||||||||||||||| | | |||||||  |||||||||||||||    
T  25441747 tttataaactcttctcaagagtactatctatctgatgtgggactaaatc 25441699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 43688474 - 43688522
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    |||||||||||||||||||| ||| |||||||| ||||| || ||||||    
T  43688474 tttataaactcttctcaagagtcctatctatccgatgtgagattaaatc 43688522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 44266361 - 44266409
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    |||||||||||||||||| ||||  |||||||  |||||||||||||||    
T  44266361 tttataaactcttctcaaaaatcttatctatctgatgtgggactaaatc 44266409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 7e-32; HSPs: 34)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 35 - 133
Target Start/End: Original strand, 83863 - 83961
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaacacacaccctcacgcttcagcccagccc 133  Q
    |||||||||| ||||||||||||| || ||||| ||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||    
T  83863 tttataaacttttctcaagaatcctatatatccgatgtgggactaaatcccacccgagtgttggccgctaacaccccccctcacgcttcagcccagccc 83961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 40 - 128
Target Start/End: Complemental strand, 33040331 - 33040243
Alignment:
Q  40 aaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaacacacaccctcacgcttcagccc 128  Q
    ||||||||||||||||||| |||||||| ||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||    
T  33040331 aaactcttctcaagaatcctatctatccgatgtgggactaaatcccacgcgagtgttggccgctaacacaccccctcacgcttcagccc 33040243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 38 - 158
Target Start/End: Complemental strand, 33040518 - 33040392
Alignment:
Q  38 ataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaacacacaccctcacgcttcagcccagcc----- 132  Q
    ||||||||||||||||||||| |||||||  ||||||||||||||| ||| ||||||||||||||||||||||  |||||||||||||||| |||         
T  33040518 ataaactcttctcaagaatcctatctatctgatgtgggactaaatcccacgcgagtgttggccgctaacacacctcctcacgcttcagcccggccgaatg 33040419  T
Q  133 -ccctgaagcgtggacgatgcaagccc 158  Q
      |||||||||||||||||||||||||    
T  33040418 ggcctgaagcgtggacgatgcaagccc 33040392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 17 - 127
Target Start/End: Original strand, 22196361 - 22196470
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaacacacaccctc 116  Q
    ||||||| || |||| | |||||||||||||||||||| | | |||||||| ||||||||||||||| || |||||||||||||||||| |||| |||||    
T  22196361 ggtgaggagtgcctcctctttataaactcttctcaagagtactatctatccgatgtgggactaaatccca-ccgagtgttggccgctaaaacaccccctc 22196459  T
Q  117 acgcttcagcc 127  Q
    |||||||||||    
T  22196460 acgcttcagcc 22196470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 17 - 107
Target Start/End: Original strand, 84069 - 84159
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaaca 107  Q
    ||||||| || |||| | |||||||||||||||||||||||| || ||||| ||||||||||||||| |||||||||||||||| ||||||    
T  84069 ggtgaggagtgcctcctctttataaactcttctcaagaatcctatatatccgatgtgggactaaatcccacccgagtgttggccactaaca 84159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 30329905 - 30329815
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaaca 107  Q
    ||||||| || |||| | |||||||||||||||||||||||| |||||||| ||||||||||||||| | |||||| ||||||||||||||    
T  30329905 ggtgaggagttcctcctctttataaactcttctcaagaatcctatctatccgatgtgggactaaatccctcccgagagttggccgctaaca 30329815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 32395350 - 32395439
Alignment:
Q  18 gtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaaca 107  Q
    |||||| || |||| | |||||||||||||||||||| ||| |||||||| ||||||||||||||| |||||||| ||||||||||||||    
T  32395350 gtgaggagtgcctcctctttataaactcttctcaagattcctatctatccgatgtgggactaaatcccacccgagagttggccgctaaca 32395439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 45 - 153
Target Start/End: Complemental strand, 18541991 - 18541878
Alignment:
Q  45 cttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaacacacaccctcacgcttcagcccagccc------cctga 138  Q
    |||||||||||||| |||||||| ||||| ||||||||| ||||  |||||||||||||||||| | ||||||||||||||||| ||||      |||||    
T  18541991 cttctcaagaatcctatctatccgatgtgagactaaatcccacca-agtgttggccgctaacaccccccctcacgcttcagcccggcccaatgggcctga 18541893  T
Q  139 agcgtggacgatgca 153  Q
    |||||||||||||||    
T  18541892 agcgtggacgatgca 18541878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 35 - 107
Target Start/End: Original strand, 14769885 - 14769956
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaaca 107  Q
    |||||||||||||||||||||||| |||||||| ||||| ||||||||| ||| |||||||||||||||||||    
T  14769885 tttataaactcttctcaagaatcctatctatccgatgtgagactaaatc-cactcgagtgttggccgctaaca 14769956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 17 - 108
Target Start/End: Original strand, 29396378 - 29396469
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaacac 108  Q
    ||||||| || |||| | |||||||||| ||||||||| ||| |||||||  ||||||||||||||| |||||||| |||||||||||||||    
T  29396378 ggtgaggagtgcctcctctttataaacttttctcaagattcctatctatctgatgtgggactaaatcccacccgagagttggccgctaacac 29396469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 69 - 158
Target Start/End: Complemental strand, 946907 - 946811
Alignment:
Q  69 atgtgggactaaatctcacccgagtgttggccgctaacacacaccctcacgcttcagcccagccc-------cctgaagcgtggacgatgcaagccc 158  Q
    ||||||||||||||| |||||||| ||||||||||||||||| |||||| |||||||||| | ||       |||||||||||||||||||||||||    
T  946907 atgtgggactaaatcccacccgagagttggccgctaacacaccccctcatgcttcagcccggtcccaacgagcctgaagcgtggacgatgcaagccc 946811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 35 - 109
Target Start/End: Original strand, 22196606 - 22196679
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaacaca 109  Q
    |||||||||||||||||||| ||  |||||||| ||||||||||||||| || ||||||||||||||||||||||    
T  22196606 tttataaactcttctcaagagtcatatctatccgatgtgggactaaatccca-ccgagtgttggccgctaacaca 22196679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 36 - 109
Target Start/End: Original strand, 24792320 - 24792394
Alignment:
Q  36 ttataaactcttctcaagaatcccatctatccaatgtgggactaaatctca-cccgagtgttggccgctaacaca 109  Q
    ||||||||||||||||||| ||| |||||||| || ||||||||||||||| |||||| ||||||||||||||||    
T  24792320 ttataaactcttctcaagattcctatctatccgatatgggactaaatctcaccccgagagttggccgctaacaca 24792394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 35 - 107
Target Start/End: Original strand, 5095949 - 5096021
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaaca 107  Q
    ||||||||||||||| || ||||| |||||||| |||||||| |||||| ||||||||||||| |||||||||    
T  5095949 tttataaactcttctaaaaaatcctatctatccgatgtgggagtaaatcccacccgagtgttgaccgctaaca 5096021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 17 - 124
Target Start/End: Complemental strand, 30330130 - 30330024
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaacacacaccctc 116  Q
    ||||||| || |||| | |||||| ||||||||||||||||  |||||| ||||||||||||||||| | | | |||||||||| ||||||||| |||||    
T  30330130 ggtgaggagtgcctcctctttatatactcttctcaagaatcatatctattcaatgtgggactaaatcgc-ctcaagtgttggcctctaacacaccccctc 30330032  T
Q  117 acgcttca 124  Q
    || |||||    
T  30330031 acacttca 30330024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 37 - 110
Target Start/End: Complemental strand, 9850522 - 9850446
Alignment:
Q  37 tataaactcttctcaagaatcccatctatccaatgtgggactaaat---ctcacccgagtgttggccgctaacacac 110  Q
    ||||||||||| |||||||||| ||||||||||||||||| |||||   | ||||||||||||||| ||||||||||    
T  9850522 tataaactcttatcaagaatcctatctatccaatgtgggaataaatccacccacccgagtgttggctgctaacacac 9850446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 35 - 108
Target Start/End: Complemental strand, 19439911 - 19439839
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaacac 108  Q
    |||||||| ||||||||||||||| |||||||  ||||||||||||||| | | ||||||||||||||||||||    
T  19439911 tttataaattcttctcaagaatcctatctatctgatgtgggactaaatc-ccctcgagtgttggccgctaacac 19439839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 17 - 107
Target Start/End: Original strand, 2471728 - 2471817
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaaca 107  Q
    ||||||| || |||| | |||||||||||||||||| || || |||||||| ||||||||||||||| | | ||||||||||| |||||||    
T  2471728 ggtgaggagtgcctcctctttataaactcttctcaaaaaccctatctatccgatgtgggactaaatc-ccctcgagtgttggctgctaaca 2471817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 38131815 - 38131767
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    |||||||||||||||||||| ||| |||||||| |||||||||||||||    
T  38131815 tttataaactcttctcaagagtcctatctatccgatgtgggactaaatc 38131767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 35 - 78
Target Start/End: Complemental strand, 395418 - 395375
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggact 78  Q
    ||||||||||||| |||||||||| |||||||||||||||||||    
T  395418 tttataaactcttatcaagaatcctatctatccaatgtgggact 395375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 873751 - 873797
Alignment:
Q  37 tataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    |||||||||||||||||| ||| |||||||| |||||||||||||||    
T  873751 tataaactcttctcaagagtcctatctatccgatgtgggactaaatc 873797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 1028128 - 1028194
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    ||||||| || |||| | |||||||||||||||||||| | | |||||||| |||||||||||||||    
T  1028128 ggtgaggagtgcctcctctttataaactcttctcaagagtgctatctatccgatgtgggactaaatc 1028194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 73 - 127
Target Start/End: Original strand, 24792192 - 24792246
Alignment:
Q  73 gggactaaatctcacccgagtgttggccgctaacacacaccctcacgcttcagcc 127  Q
    ||||| |||||||||| ||| |||||||| |||||||| ||||||||||||||||    
T  24792192 gggacaaaatctcacctgagagttggccgttaacacaccccctcacgcttcagcc 24792246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 27760144 - 27760078
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    ||||||| || |||| | |||| ||||||||||||||| ||| |||||||| |||||||||||||||    
T  27760144 ggtgaggagtgcctcttctttagaaactcttctcaagagtcctatctatccgatgtgggactaaatc 27760078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 107
Target Start/End: Complemental strand, 33040112 - 33040042
Alignment:
Q  37 tataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaaca 107  Q
    ||||||||||| |||||||||| || ||| | ||||| ||||||||| ||||| |||||| ||||||||||    
T  33040112 tataaactcttttcaagaatcctatatattcgatgtgagactaaatcccacccaagtgttagccgctaaca 33040042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 29432463 - 29432415
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    ||||||||||||| |||||| ||| ||||| ||||||||||||||||||    
T  29432463 tttataaactcttatcaagagtcctatctaaccaatgtgggactaaatc 29432415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 37995687 - 37995735
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    |||||||||||||||||||| | | |||||||| |||||||||||||||    
T  37995687 tttataaactcttctcaagagtgctatctatccgatgtgggactaaatc 37995735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 39668470 - 39668518
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    |||||||| ||||||||||||||  |||||||| |||||||||||||||    
T  39668470 tttataaattcttctcaagaatcatatctatccgatgtgggactaaatc 39668518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 396321 - 396263
Alignment:
Q  25 gtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    ||||||| | |||||||| |||| |||||| ||| |||||| |||||||||||||||||    
T  396321 gtacctcctctttataaagtcttatcaagagtcctatctattcaatgtgggactaaatc 396263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 69 - 107
Target Start/End: Complemental strand, 946760 - 946722
Alignment:
Q  69 atgtgggactaaatctcacccgagtgttggccgctaaca 107  Q
    ||||||||||||||| |||||||| ||||||||||||||    
T  946760 atgtgggactaaatcccacccgagagttggccgctaaca 946722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 35 - 108
Target Start/End: Complemental strand, 18541773 - 18541702
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaacac 108  Q
    |||||||||| ||||||||||||  |||||||| || |  ||||||||||   |||||||||||||||||||||    
T  18541773 tttataaactattctcaagaatcttatctatccgatcttagactaaatct--accgagtgttggccgctaacac 18541702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 13843748 - 13843700
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    |||||||||||||||||||| | | |||||||  |||||||||||||||    
T  13843748 tttataaactcttctcaagagtactatctatctgatgtgggactaaatc 13843700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 13844064 - 13844016
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    |||||||||||||||||||| | | |||||||  |||||||||||||||    
T  13844064 tttataaactcttctcaagagtactatctatcagatgtgggactaaatc 13844016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 28009850 - 28009898
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    |||||||||||||||||||| | | |||||||  |||||||||||||||    
T  28009850 tttataaactcttctcaagagttctatctatctgatgtgggactaaatc 28009898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 1e-30; HSPs: 40)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 17 - 158
Target Start/End: Original strand, 46528958 - 46529104
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaacacacaccctc 116  Q
    ||||||| || |||| | |||||||||||||||||||||||| |||||||| ||||| ||||||||| || |||||||||||| |||||||||| |||||    
T  46528958 ggtgaggagtgcctcctctttataaactcttctcaagaatccaatctatccgatgtgagactaaatccca-ccgagtgttggctgctaacacaccccctc 46529056  T
Q  117 acgcttcagcccagccc------cctgaagcgtggacgatgcaagccc 158  Q
     ||||||||||| ||||      |||||||||||||||||||||||||    
T  46529057 gcgcttcagcccggcccaatgggcctgaagcgtggacgatgcaagccc 46529104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 35 - 107
Target Start/End: Complemental strand, 11290220 - 11290148
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaaca 107  Q
    |||||||||||||||||||| ||| |||||||| ||||||||||||||| |||||||| ||||||||||||||    
T  11290220 tttataaactcttctcaagattcctatctatccgatgtgggactaaatcccacccgagagttggccgctaaca 11290148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 35 - 151
Target Start/End: Original strand, 52810678 - 52810799
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaacacacaccctcacgcttcagcccagccc- 133  Q
    |||||||||||||||||||||||  |||||||| |||| |||||||||  ||   ||||||||||||||||||||| ||||||||||||||||| ||||     
T  52810678 tttataaactcttctcaagaatcttatctatccgatgtaggactaaattccatt-gagtgttggccgctaacacaccccctcacgcttcagcccggccca 52810776  T
Q  134 -----cctgaagcgtggacgatg 151  Q
         ||||||||||||||||||    
T  52810777 atgggcctgaagcgtggacgatg 52810799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 14 - 108
Target Start/End: Complemental strand, 4026145 - 4026052
Alignment:
Q  14 tatggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaacac 108  Q
    ||||||||||  | |||||| |||||||||||||||||||||||| |||||||| ||||||||||||||| || | ||||||||||||| |||||    
T  4026145 tatggtgaggaatgcctcatatttataaactcttctcaagaatcctatctatccgatgtgggactaaatccca-ctgagtgttggccgccaacac 4026052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 35 - 108
Target Start/End: Original strand, 50868066 - 50868139
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaacac 108  Q
    |||||||||||||||||||| ||| |||||||| ||||||||||||||| |||||||| ||||| |||||||||    
T  50868066 tttataaactcttctcaagattcctatctatccgatgtgggactaaatcccacccgagagttggtcgctaacac 50868139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 47845839 - 47845769
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaa 105  Q
    ||||||||||||||||||||| || |||||||| | ||||||||||||| ||||||||||||||| |||||    
T  47845839 tttataaactcttctcaagaaacctatctatccgacgtgggactaaatcccacccgagtgttggctgctaa 47845769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 18 - 107
Target Start/End: Complemental strand, 33912111 - 33912023
Alignment:
Q  18 gtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaaca 107  Q
    |||||| || |||| | ||||||||||||||||||| |||| ||||| || ||||||||||||||| || ||||||||||||||||||||    
T  33912111 gtgaggagtgcctcctctttataaactcttctcaagtatcctatctacccgatgtgggactaaatccca-ccgagtgttggccgctaaca 33912023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 13254452 - 13254386
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    ||||||| || |||||| |||||||||||||||||| | ||| ||||||||||||||||||||||||    
T  13254452 ggtgaggagtgcctcatctttataaactcttctcaatagtcctatctatccaatgtgggactaaatc 13254386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 33 - 107
Target Start/End: Original strand, 37288920 - 37288993
Alignment:
Q  33 tttttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaaca 107  Q
    |||||||||||||||||||||||||  |||||||| ||||||||||||||| || |||| ||||||| |||||||    
T  37288920 tttttataaactcttctcaagaatcatatctatccgatgtgggactaaatccca-ccgattgttggcagctaaca 37288993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 35 - 107
Target Start/End: Original strand, 37097784 - 37097855
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaaca 107  Q
    |||||||| ||||||||||||||| |||||||  ||||||||||||||| || ||||||||||| ||||||||    
T  37097784 tttataaaatcttctcaagaatcctatctatctgatgtgggactaaatccca-ccgagtgttggtcgctaaca 37097855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 52810911 - 52810978
Alignment:
Q  41 aactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaacaca 109  Q
    |||||||||||||||||   ||||||| ||||||||||||||| || ||||||||||||||||||||||    
T  52810911 aactcttctcaagaatcttttctatccgatgtgggactaaatccca-ccgagtgttggccgctaacaca 52810978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 37 - 108
Target Start/End: Complemental strand, 26941910 - 26941840
Alignment:
Q  37 tataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaacac 108  Q
    ||||||||||||||||| || | |||||| | ||||||||||||||| || |||||||||||||||||||||    
T  26941910 tataaactcttctcaaggatactatctattcgatgtgggactaaatccca-ccgagtgttggccgctaacac 26941840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 2016601 - 2016512
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaaca 107  Q
    ||||||| || |||| | |||||||||||||||||||||||| |||||||  ||||| ||||||||| | | |||||||||||| ||||||    
T  2016601 ggtgaggagtgcctcctctttataaactcttctcaagaatcctatctatctgatgtgagactaaatc-ccctcgagtgttggccactaaca 2016512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 35 - 109
Target Start/End: Complemental strand, 5427179 - 5427106
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaacaca 109  Q
    |||||||||||||||||| ||||  |||||||||||||||| ||||| | || || |||||||||||||||||||    
T  5427179 tttataaactcttctcaaaaatcttatctatccaatgtggggctaaacccca-ccaagtgttggccgctaacaca 5427106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 51469550 - 51469484
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    ||||||| || |||| | |||||||||||||||||||| ||| |||||||| |||||||||||||||    
T  51469550 ggtgaggagtgcctcctctttataaactcttctcaagagtcctatctatccgatgtgggactaaatc 51469484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 44 - 133
Target Start/End: Original strand, 37288700 - 37288788
Alignment:
Q  44 tcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaacacacaccctcacgcttcagcccagccc 133  Q
    |||||||||||||| ||||||||| ||||||||| ||||| || ||||||| |||  | |||||||  ||||||| ||||||||||||||    
T  37288700 tcttctcaagaatctcatctatccgatgtgggacaaaatccca-ccgagtgctggtggttaacacagcccctcacccttcagcccagccc 37288788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 53 - 128
Target Start/End: Complemental strand, 42901851 - 42901775
Alignment:
Q  53 gaatcccatctatccaatgtgggactaaatctcacccgagtg-ttggccgctaacacacaccctcacgcttcagccc 128  Q
    |||||| |||||||  ||||||||||||||| |||||||| | ||||| |||||||||| |||||||||||| ||||    
T  42901851 gaatcctatctatctgatgtgggactaaatcccacccgagagtttggcagctaacacaccccctcacgcttctgccc 42901775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 36 - 83
Target Start/End: Complemental strand, 51470533 - 51470486
Alignment:
Q  36 ttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    ||||||||||||||||||| ||| |||||||| |||||||||||||||    
T  51470533 ttataaactcttctcaagagtcctatctatccgatgtgggactaaatc 51470486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 15665202 - 15665156
Alignment:
Q  37 tataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    |||||||||||||||||| ||| |||||||| |||||||||||||||    
T  15665202 tataaactcttctcaagagtcctatctatccgatgtgggactaaatc 15665156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 22867153 - 22867087
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    ||||||| || |||| | |||||||||||||||||||| ||| |||||||| | |||||||||||||    
T  22867153 ggtgaggagtgcctcctctttataaactcttctcaagagtcctatctatccgacgtgggactaaatc 22867087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 29669398 - 29669464
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    ||||||| || |||| | |||||||||||||||||||| | | |||||||| |||||||||||||||    
T  29669398 ggtgaggagtgcctcctctttataaactcttctcaagagtgctatctatccgatgtgggactaaatc 29669464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 43798162 - 43798228
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    ||||||| |||||||   || ||||||||||||||||||||| || ||||| |||||||||||||||    
T  43798162 ggtgaggagtacctccccttaataaactcttctcaagaatcctatatatccgatgtgggactaaatc 43798228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 50858081 - 50858015
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    ||||||| ||||||| | |||||||| ||||||||||| | | |||||||| |||||||||||||||    
T  50858081 ggtgaggagtacctcttctttataaaatcttctcaagagtactatctatccgatgtgggactaaatc 50858015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 53740251 - 53740185
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    ||||||| || |||| | |||||||||||||||||||| | | |||||||| |||||||||||||||    
T  53740251 ggtgaggagtgcctcctctttataaactcttctcaagagtactatctatccgatgtgggactaaatc 53740185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 43972090 - 43972042
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    ||||| |||||||||||||| ||| |||||||||| |||||||||||||    
T  43972090 tttatcaactcttctcaagagtcctatctatccaacgtgggactaaatc 43972042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 33797144 - 33797203
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtggga 76  Q
    ||||||| || |||| | ||||||||||||| |||||| ||| |||||||||||||||||    
T  33797144 ggtgaggagtgcctcgtctttataaactcttatcaagagtcctatctatccaatgtggga 33797203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 107
Target Start/End: Complemental strand, 47846076 - 47846029
Alignment:
Q  60 atctatccaatgtgggactaaatctcacccgagtgttggccgctaaca 107  Q
    |||||||| ||||||||||||||||||||||||| ||||  |||||||    
T  47846076 atctatccgatgtgggactaaatctcacccgagtattggatgctaaca 47846029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 29669713 - 29669779
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    ||||||| || |||| | |||||||||||||||||||| | | |||||||  |||||||||||||||    
T  29669713 ggtgaggagtgcctcctctttataaactcttctcaagagtgctatctatctgatgtgggactaaatc 29669779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 45426971 - 45427037
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    ||||||| || |||| | |||||||||||||||||||| | | |||||||| ||||||| |||||||    
T  45426971 ggtgaggagtgcctcctctttataaactcttctcaagagtactatctatccgatgtggggctaaatc 45427037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 990616 - 990551
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaat 82  Q
    ||||||| || |||| | |||||||||||||||||||| |   |||||||| ||||||||||||||    
T  990616 ggtgaggagtgcctcctctttataaactcttctcaagagtgttatctatccgatgtgggactaaat 990551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 43972424 - 43972359
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaat 82  Q
    ||||||| || |||| | ||||| |||| ||||||||| ||| |||||||| ||||||||||||||    
T  43972424 ggtgaggagtgcctcctctttatcaacttttctcaagagtcctatctatccgatgtgggactaaat 43972359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 52827267 - 52827328
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggact 78  Q
    ||||||| || |||| | ||||||||||||| |||||| ||| |||||||||||||| ||||    
T  52827267 ggtgaggagtgcctcctctttataaactcttatcaagagtcctatctatccaatgtgagact 52827328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 33629727 - 33629671
Alignment:
Q  18 gtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgg 74  Q
    |||||| ||||||| | ||||||||||||  |||||| || ||||||||||||||||    
T  33629727 gtgaggagtacctcctatttataaactctcatcaagagtctcatctatccaatgtgg 33629671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 33629989 - 33629929
Alignment:
Q  18 gtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggact 78  Q
    |||||| || |||| | ||||||||||||  |||||| || ||||||||||||||||||||    
T  33629989 gtgaggagtgcctcctatttataaactctcatcaagagtctcatctatccaatgtgggact 33629929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 36558519 - 36558567
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    |||||||||||||||||| | ||  |||||||| |||||||||||||||    
T  36558519 tttataaactcttctcaaaagtcatatctatccgatgtgggactaaatc 36558567  T

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Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 49544383 - 49544335
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    |||||||||||||||||||||||  |||||||| |||||| || |||||    
T  49544383 tttataaactcttctcaagaatcttatctatccgatgtggaacaaaatc 49544335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 50858379 - 50858331
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    |||||||||||||||||||| | | |||||||  |||||||||||||||    
T  50858379 tttataaactcttctcaagagtactatctatctgatgtgggactaaatc 50858331  T

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Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 53738261 - 53738309
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    |||||||||||||||||||| ||  |||||| | |||||||||||||||    
T  53738261 tttataaactcttctcaagagtcttatctattctatgtgggactaaatc 53738309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 53739917 - 53739869
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    |||||||||||||||||||| | | |||||||| || ||||||||||||    
T  53739917 tttataaactcttctcaagagtactatctatccgatatgggactaaatc 53739869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 56509660 - 56509612
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    |||||||||||||||||||  ||| |||||||| |||| ||||||||||    
T  56509660 tttataaactcttctcaagggtcctatctatccgatgtaggactaaatc 56509612  T

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Target: chr3 (Bit Score: 69; Significance: 1e-30; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 36 - 128
Target Start/End: Original strand, 10450478 - 10450570
Alignment:
Q  36 ttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaacacacaccctcacgcttcagccc 128  Q
    |||||||||||||||||||| || |||||||| ||||||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||    
T  10450478 ttataaactcttctcaagaaacctatctatccgatgtgggactaaatcccacccgagtgttggctgctaacacaccccctcacgcttcagccc 10450570  T

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Target: chr3; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 35 - 133
Target Start/End: Original strand, 48511463 - 48511563
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaacacaca--ccctcacgcttcagcccagcc 132  Q
    |||||||||||||||||||| ||| |||||||| ||||||||||||||| |||||||| ||||||||||||||||||  ||||||||||||||||| |||    
T  48511463 tttataaactcttctcaagattcctatctatccgatgtgggactaaatcccacccgagagttggccgctaacacacaccccctcacgcttcagcccggcc 48511562  T
Q  133 c 133  Q
    |    
T  48511563 c 48511563  T

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Target: chr3; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 35 - 109
Target Start/End: Complemental strand, 53966284 - 53966210
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaacaca 109  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||| ||||||||||||||||    
T  53966284 tttataaactcttctcaagaatcctatctatccgatgtgggactaaatcccacccgagagttggccgctaacaca 53966210  T

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Target: chr3; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 17 - 108
Target Start/End: Original strand, 10450683 - 10450774
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaacac 108  Q
    ||||||| || |||| | ||||||||||||||||||||| || |||||||| ||||||||||||||| ||||||||||||||| ||||||||    
T  10450683 ggtgaggagtgcctcctctttataaactcttctcaagaaacctatctatccgatgtgggactaaatcccacccgagtgttggctgctaacac 10450774  T

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Target: chr3; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 36 - 107
Target Start/End: Original strand, 15820659 - 15820730
Alignment:
Q  36 ttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaaca 107  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||| |||||||    
T  15820659 ttataaactcttctcaagaatcctatctatccgatgtgggactaaatcccacccgagtgttggctgctaaca 15820730  T

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Target: chr3; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 35 - 133
Target Start/End: Complemental strand, 9180419 - 9180322
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaacacacaccctcacgcttcagcccagccc 133  Q
    |||||||||| ||||||||||||| |||||||| ||||||||||||||| |   |||| ||||||||||||||||| | ||||||||||||||||||||    
T  9180419 tttataaacttttctcaagaatcctatctatccgatgtgggactaaatc-cgatcgagggttggccgctaacacacccactcacgcttcagcccagccc 9180322  T

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Target: chr3; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 35 - 133
Target Start/End: Original strand, 22666371 - 22666467
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaacacacaccctcacgcttcagcccagccc 133  Q
    |||||||||||||||||||||||| |||||||| | ||||||||||||||   | || ||||| | |||||||||||||||||||||||||||| ||||    
T  22666371 tttataaactcttctcaagaatcctatctatccgacgtgggactaaatct--actgaatgttgactgctaacacacaccctcacgcttcagcccggccc 22666467  T

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Target: chr3; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 17 - 107
Target Start/End: Original strand, 11244576 - 11244666
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaaca 107  Q
    ||||||| || |||| | ||||||||||||||||||||| || |||||||| ||||||||||||||| ||||||||||||| | |||||||    
T  11244576 ggtgaggagtgcctcctctttataaactcttctcaagaaacctatctatccgatgtgggactaaatcccacccgagtgttgactgctaaca 11244666  T

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Target: chr3; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 35 - 133
Target Start/End: Original strand, 40769965 - 40770062
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaacacacaccctcacgcttcagcccagccc 133  Q
    ||||| |||||||| ||| ||||  |||||||| ||||||||||||||| | | |||||||||||||||||||||| ||||||||||| ||||||||||    
T  40769965 tttatgaactcttcacaataatcatatctatccgatgtgggactaaatccc-ctcgagtgttggccgctaacacaccccctcacgctttagcccagccc 40770062  T

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Target: chr3; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 36 - 107
Target Start/End: Original strand, 42190530 - 42190601
Alignment:
Q  36 ttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaaca 107  Q
    ||||||||||||||||||| ||| |||||||| |||||||| |||||| |||||||| ||||||||||||||    
T  42190530 ttataaactcttctcaagattcctatctatccgatgtgggattaaatcccacccgagagttggccgctaaca 42190601  T

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Target: chr3; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 17 - 127
Target Start/End: Original strand, 10453738 - 10453846
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaacacacaccctc 116  Q
    ||||||| || |||| | ||||||||| |||||||||||||| |||||||| || |||||||||||| || || ||||||||| |||||||||| |||||    
T  10453738 ggtgaggagtgcctcctctttataaacccttctcaagaatcctatctatccgatctgggactaaatc-ca-ccaagtgttggctgctaacacaccccctc 10453835  T
Q  117 acgcttcagcc 127  Q
    || ||||||||    
T  10453836 acacttcagcc 10453846  T

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Target: chr3; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 24453847 - 24453758
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaaca 107  Q
    ||||||| || |||| | ||||||||||||||||||||| || |||||||| ||||||||||||||| | | |||||||||||||||||||    
T  24453847 ggtgaggagtgcctcctgtttataaactcttctcaagaaccctatctatccgatgtgggactaaatc-ccctcgagtgttggccgctaaca 24453758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 17 - 98
Target Start/End: Original strand, 48511674 - 48511755
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttgg 98  Q
    ||||||| || |||| | |||||||||||||||||||| ||| |||||||| ||||||||||||||| |||||||| |||||    
T  48511674 ggtgaggagtgcctcctctttataaactcttctcaagattcctatctatccgatgtgggactaaatcccacccgagagttgg 48511755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 36 - 108
Target Start/End: Original strand, 51734611 - 51734681
Alignment:
Q  36 ttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaacac 108  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||||| || |||||||||||| ||||||||    
T  51734611 ttataaactcttctcaagaatcctatctatccgatgtgggactaaatc-ca-ccgagtgttggctgctaacac 51734681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 35 - 106
Target Start/End: Complemental strand, 9179184 - 9179114
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaac 106  Q
    ||||||||||||||||| |||||   ||||||| ||||||||||||||| || |||||||||||||||||||    
T  9179184 tttataaactcttctcatgaatcatgtctatccgatgtgggactaaatccca-ccgagtgttggccgctaac 9179114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 13769326 - 13769392
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    ||||||| || |||| | |||||||||||||||||||| | | ||||||||||||||||||||||||    
T  13769326 ggtgaggagtgcctcctctttataaactcttctcaagagtgctatctatccaatgtgggactaaatc 13769392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 37 - 107
Target Start/End: Original strand, 48837063 - 48837132
Alignment:
Q  37 tataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaaca 107  Q
    |||| ||||||||||| ||||| |||||||| ||||||||||||||| || |||||||||||| |||||||    
T  48837063 tatatactcttctcaataatcctatctatccgatgtgggactaaatccca-ccgagtgttggcagctaaca 48837132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 54369107 - 54369042
Alignment:
Q  18 gtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    |||||| || |||| | |||||||||||||||||||| ||| |||||||| |||||||||||||||    
T  54369107 gtgaggagtgcctcctctttataaactcttctcaagagtcctatctatccgatgtgggactaaatc 54369042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 35 - 107
Target Start/End: Original strand, 10856679 - 10856750
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaaca 107  Q
    ||||||||||||| |||||||||| ||| |||| ||||||||||||||| || || ||| |||||||||||||    
T  10856679 tttataaactcttttcaagaatcctatccatccgatgtgggactaaatccca-ccaagtattggccgctaaca 10856750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 45443331 - 45443283
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    |||||||||||||||||||| | | ||||||||||||||||||||||||    
T  45443331 tttataaactcttctcaagagtgctatctatccaatgtgggactaaatc 45443283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 29 - 104
Target Start/End: Original strand, 16045417 - 16045491
Alignment:
Q  29 ctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgcta 104  Q
    ||||| ||||||||||||||||||||||   || ||||| ||||||||||||||| ||  ||||||||||||||||    
T  16045417 ctcatatttataaactcttctcaagaatattatatatccgatgtgggactaaatccca-tcgagtgttggccgcta 16045491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 29 - 104
Target Start/End: Original strand, 16060932 - 16061006
Alignment:
Q  29 ctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgcta 104  Q
    ||||| ||||||||||||||||||||||   || ||||| ||||||||||||||| ||  ||||||||||||||||    
T  16060932 ctcatctttataaactcttctcaagaatattatatatccgatgtgggactaaatccca-tcgagtgttggccgcta 16061006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 101
Target Start/End: Complemental strand, 9178958 - 9178893
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccg 101  Q
    ||||||||||||||| |||||||| |||||||| || ||||||||||| ||  ||||||||||||||    
T  9178958 tttataaactcttcttaagaatcctatctatccgatatgggactaaat-tccaccgagtgttggccg 9178893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 27219398 - 27219332
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    ||||||| || |||| | |||||||||||||||||||| | | |||||||| |||||||||||||||    
T  27219398 ggtgaggagtgcctcctctttataaactcttctcaagagtgctatctatccgatgtgggactaaatc 27219332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 43101406 - 43101472
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    ||||||| || |||| | |||||||||||||||||||| ||| |||||||  |||||||||||||||    
T  43101406 ggtgaggagtgcctcctctttataaactcttctcaagagtcctatctatctgatgtgggactaaatc 43101472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 44573395 - 44573329
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    ||||||| || |||| | |||||||||||||||||||| | | |||||||| |||||||||||||||    
T  44573395 ggtgaggagtgcctcctctttataaactcttctcaagagtactatctatccgatgtgggactaaatc 44573329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 47833697 - 47833763
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    ||||||| || |||| | ||||||||| |||||||||| ||| |||||||| |||||||||||||||    
T  47833697 ggtgaggagtgcctcctctttataaacacttctcaagagtcctatctatccgatgtgggactaaatc 47833763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 35 - 84
Target Start/End: Original strand, 5321589 - 5321638
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatct 84  Q
    ||||||||||||| |||| ||||| |||||||| ||||||||||||||||    
T  5321589 tttataaactcttttcaaaaatcctatctatccgatgtgggactaaatct 5321638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 2800014 - 2800062
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    ||||||||||| ||| |||||||| |||||||| |||||||||||||||    
T  2800014 tttataaactcatcttaagaatcctatctatccgatgtgggactaaatc 2800062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 41380775 - 41380727
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    |||||||||||||||||||| | | |||||||| |||||||||||||||    
T  41380775 tttataaactcttctcaagagtgctatctatccgatgtgggactaaatc 41380727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 29 - 107
Target Start/End: Original strand, 16051582 - 16051659
Alignment:
Q  29 ctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaaca 107  Q
    ||||| ||||||||||||||||||||||   || ||||  ||||||||||||||| ||   ||||||||||||||||||    
T  16051582 ctcatctttataaactcttctcaagaatattatatatctgatgtgggactaaatccca-ttgagtgttggccgctaaca 16051659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 34715490 - 34715556
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    ||||||| || |||| | |||||||||||||||||| | | | |||||||| |||||||||||||||    
T  34715490 ggtgaggagtgcctcctctttataaactcttctcaaaagtgctatctatccgatgtgggactaaatc 34715556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 247
Target Start/End: Original strand, 10450516 - 10450549
Alignment:
Q  214 ggactaaatcccacctgagtgttggctgctaaca 247  Q
    ||||||||||||||| ||||||||||||||||||    
T  10450516 ggactaaatcccacccgagtgttggctgctaaca 10450549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 247
Target Start/End: Original strand, 10450740 - 10450773
Alignment:
Q  214 ggactaaatcccacctgagtgttggctgctaaca 247  Q
    ||||||||||||||| ||||||||||||||||||    
T  10450740 ggactaaatcccacccgagtgttggctgctaaca 10450773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 247
Target Start/End: Original strand, 15820697 - 15820730
Alignment:
Q  214 ggactaaatcccacctgagtgttggctgctaaca 247  Q
    ||||||||||||||| ||||||||||||||||||    
T  15820697 ggactaaatcccacccgagtgttggctgctaaca 15820730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 3985824 - 3985776
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    |||||||||||||||||| | ||  |||||||| |||||||||||||||    
T  3985824 tttataaactcttctcaaaagtcatatctatccgatgtgggactaaatc 3985776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 48685370 - 48685418
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    |||||||||||||||||||| | | || ||||| |||||||||||||||    
T  48685370 tttataaactcttctcaagagtactatatatccgatgtgggactaaatc 48685418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 50203892 - 50203956
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaa 81  Q
    ||||||| || |||| | |||||||||||||||||||| ||  |||||||| ||||| |||||||    
T  50203892 ggtgaggagtgcctcctctttataaactcttctcaagagtcttatctatccgatgtgagactaaa 50203956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 35 - 133
Target Start/End: Complemental strand, 165835 - 165738
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaacacacaccctcacgcttcagcccagccc 133  Q
    |||||||||||||||||||||| | |||||||| |||| |||||||||| | | |||||||||||||||||||||| ||||||||||||||||| ||||    
T  165835 tttataaactcttctcaagaattctatctatccgatgtaggactaaatccc-ctcgagtgttggccgctaacacaccccctcacgcttcagcccggccc 165738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 1e-24; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 35 - 125
Target Start/End: Complemental strand, 33396576 - 33396487
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaacacacaccctcacgcttcag 125  Q
    |||||||||||||||||| ||||| |||||||| |||||| |||||||| |||||||||||||||||||||||||| || |||||||||||    
T  33396576 tttataaactcttctcaaaaatcctatctatccgatgtgg-actaaatcccacccgagtgttggccgctaacacaccccgtcacgcttcag 33396487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 35 - 107
Target Start/End: Complemental strand, 33396358 - 33396286
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaaca 107  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||| ||||| |||||||||||||||||    
T  33396358 tttataaactcttctcaagaatcctatctatccgatgtgggactaaatcccaccctagtgttggccgctaaca 33396286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 26842789 - 26842699
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaaca 107  Q
    ||||||| || |||| | ||||||||||||||||||||| || |||||||| ||||||||||||||| ||||||||||||||| |||||||    
T  26842789 ggtgaggagtgcctcctctttataaactcttctcaagaaacctatctatccgatgtgggactaaatcccacccgagtgttggctgctaaca 26842699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 35 - 158
Target Start/End: Complemental strand, 16194071 - 16193943
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaacacacaccctcacgcttcagcccagccc- 133  Q
    ||||||||||||||| |||||||| || ||||| ||||||||||| ||||| | | |||||||||||||| ||||| ||||||||||||||||| | ||     
T  16194071 tttataaactcttctaaagaatcctatatatccgatgtgggactagatctc-ctctagtgttggccgctagcacaccccctcacgcttcagccccgtcca 16193973  T
Q  134 -----cctgaagcgtggacgatgcaagccc 158  Q
         |||||||||||||| ||||||||||    
T  16193972 atggacctgaagcgtggactatgcaagccc 16193943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 35 - 107
Target Start/End: Complemental strand, 25184054 - 25183982
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaaca 107  Q
    ||||||||||||| |||||||||  |||||||| ||| ||||||||||| ||||||||||||||| |||||||    
T  25184054 tttataaactcttatcaagaatcttatctatccgatgcgggactaaatcccacccgagtgttggctgctaaca 25183982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 35 - 92
Target Start/End: Complemental strand, 25184261 - 25184204
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgag 92  Q
    ||||||||||||| |||||||||| |||||||| ||| ||||||||||| ||||||||    
T  25184261 tttataaactcttatcaagaatcctatctatccgatgcgggactaaatcccacccgag 25184204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 8144086 - 8144020
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    ||||||| || |||| | |||||||||||||||||||| | | |||||||| |||||||||||||||    
T  8144086 ggtgaggagtgcctcctctttataaactcttctcaagagtgctatctatccgatgtgggactaaatc 8144020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 24055144 - 24055210
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    ||||||| || |||| | |||||||||||||||||||| | | |||||||| |||||||||||||||    
T  24055144 ggtgaggagtgcctcgtctttataaactcttctcaagagtgctatctatccgatgtgggactaaatc 24055210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 35 - 108
Target Start/End: Original strand, 26339895 - 26339967
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaacac 108  Q
    |||||||||||||||||||| ||  |||||||| ||||||||||||||| | | ||||||||||| | ||||||    
T  26339895 tttataaactcttctcaagattcttatctatccgatgtgggactaaatc-ccctcgagtgttggctgttaacac 26339967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 19753657 - 19753705
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    |||||||||||||||||||| ||| |||||| | |||||||||||||||    
T  19753657 tttataaactcttctcaagagtcctatctataccatgtgggactaaatc 19753705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 21067110 - 21067158
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    |||||||||||||||||||||| | |||||||| || ||||||||||||    
T  21067110 tttataaactcttctcaagaatgctatctatccgatatgggactaaatc 21067158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 21088901 - 21088949
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    |||||||||||||||||||||| | |||||||| || ||||||||||||    
T  21088901 tttataaactcttctcaagaatgctatctatccgatatgggactaaatc 21088949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 214 - 250
Target Start/End: Complemental strand, 26842732 - 26842696
Alignment:
Q  214 ggactaaatcccacctgagtgttggctgctaacaata 250  Q
    ||||||||||||||| |||||||||||||||||||||    
T  26842732 ggactaaatcccacccgagtgttggctgctaacaata 26842696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 1744877 - 1744940
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaa 80  Q
    ||||||| || |||| | ||||||||||||| |||||| | | |||||||||||||||||||||    
T  1744877 ggtgaggagtgcctcctctttataaactcttttcaagagtactatctatccaatgtgggactaa 1744940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 19054562 - 19054499
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaa 80  Q
    ||||||| || |||||| |||||||||||||||||||| |   |||||||| ||||||||||||    
T  19054562 ggtgaggagtgcctcatctttataaactcttctcaagagtgttatctatccgatgtgggactaa 19054499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 8427619 - 8427530
Alignment:
Q  17 ggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaaca 107  Q
    ||||||| || |||| | ||| |||||||||||||||||||  || ||||| |||||  ||||||||||| |||| | |||||||||||||    
T  8427619 ggtgaggagtgcctcctctttctaaactcttctcaagaatcttatatatccgatgtgaaactaaatctca-ccgaatattggccgctaaca 8427530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 27577839 - 27577885
Alignment:
Q  37 tataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    |||||||||||||||||||||  ||||||||  ||||||||||||||    
T  27577839 tataaactcttctcaagaatcttatctatccgttgtgggactaaatc 27577885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 80
Target Start/End: Original strand, 12134536 - 12134581
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaa 80  Q
    |||||||||||||||||||| | | |||||||| ||||||||||||    
T  12134536 tttataaactcttctcaagagtgctatctatccgatgtgggactaa 12134581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 84
Target Start/End: Original strand, 17096751 - 17096800
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatct 84  Q
    |||||||||||||||||||| ||| |||||| | ||||| ||||||||||    
T  17096751 tttataaactcttctcaagactcctatctattcgatgtgagactaaatct 17096800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 247
Target Start/End: Complemental strand, 25184015 - 25183982
Alignment:
Q  214 ggactaaatcccacctgagtgttggctgctaaca 247  Q
    ||||||||||||||| ||||||||||||||||||    
T  25184015 ggactaaatcccacccgagtgttggctgctaaca 25183982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 80
Target Start/End: Original strand, 27443590 - 27443635
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaa 80  Q
    |||||||||||||||||||||||| |||||||  |||||| |||||    
T  27443590 tttataaactcttctcaagaatcctatctatctgatgtggtactaa 27443635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 10733491 - 10733539
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    |||||||||||||||||||| |   |||| |||||||||||||||||||    
T  10733491 tttataaactcttctcaagagtgttatctgtccaatgtgggactaaatc 10733539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 21043834 - 21043882
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    |||||||||||||||||||| | | |||||||| || ||||||||||||    
T  21043834 tttataaactcttctcaagagtgctatctatccgatatgggactaaatc 21043882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 37 - 109
Target Start/End: Complemental strand, 23591578 - 23591508
Alignment:
Q  37 tataaactcttctcaagaatcccatctatccaatgtgggactaaatctcacccgagtgttggccgctaacaca 109  Q
    |||||||| ||||||||||||  |||||||  |||||||| |||||| || |||||||||||| |||||||||    
T  23591578 tataaacttttctcaagaatcttatctatctgatgtgggattaaatc-ca-ccgagtgttggctgctaacaca 23591508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 36 - 109
Target Start/End: Original strand, 34703 - 34777
Alignment:
Q  36 ttataaactcttctcaagaatcccatctatccaatgtgggactaaatctca-cccgagtgttggccgctaacaca 109  Q
    ||||||||||||||||||| ||| |||||||| || ||||||||||||||| |||||| ||||||||||||||||    
T  34703 ttataaactcttctcaagattcctatctatccgatatgggactaaatctcaccccgagagttggccgctaacaca 34777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 73 - 127
Target Start/End: Original strand, 34575 - 34629
Alignment:
Q  73 gggactaaatctcacccgagtgttggccgctaacacacaccctcacgcttcagcc 127  Q
    ||||| |||||||||| ||| |||||||| |||||||| ||||||||||||||||    
T  34575 gggacaaaatctcacctgagagttggccgttaacacaccccctcacgcttcagcc 34629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0785 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: scaffold0785
Description:

Target: scaffold0785; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 69 - 122
Target Start/End: Original strand, 2983 - 3035
Alignment:
Q  69 atgtgggactaaatctcacccgagtgttggccgctaacacacaccctcacgctt 122  Q
    ||||||||||||||| |||| ||||||||||||||||||||| |||||||||||    
T  2983 atgtgggactaaatcccacc-gagtgttggccgctaacacaccccctcacgctt 3035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0785; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 3152 - 3221
Alignment:
Q  14 tatggtgaggtgtacctcatttttataaactcttctcaagaatcccatctatccaatgtgggactaaatc 83  Q
    |||||||||| ||  ||| | |||||||||||||||||| ||| | |||||||| |||||||||||||||    
T  3152 tatggtgaggagtgtctcctctttataaactcttctcaaaaattctatctatccgatgtgggactaaatc 3221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 80
Target Start/End: Complemental strand, 43771 - 43726
Alignment:
Q  35 tttataaactcttctcaagaatcccatctatccaatgtgggactaa 80  Q
    |||||||||||||||||||||||| |||||||  |||||| |||||    
T  43771 tttataaactcttctcaagaatcctatctatctgatgtggtactaa 43726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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