View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7746_low_3 (Length: 550)
Name: NF7746_low_3
Description: NF7746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7746_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 18 - 490
Target Start/End: Complemental strand, 45267836 - 45267363
Alignment:
| Q |
18 |
tgtttatatcgaagttatctgcttctgcggtggtggggaagctggagaatgtggcgaagaaacttaatttgagggtaacggggaagaaggatttcatggt |
117 |
Q |
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| T |
45267836 |
tgtttatatccaagttgtctgcttctgcggtggtggggaagctggagaatgtggcgaagaagcttaatttgagggtaacggggaagaaggatttcatggt |
45267737 |
T |
|
| Q |
118 |
gagaatgcaggggacaacagaggggaggaaggggaaattgggtatgacggtggaggtgtttgaggtcgcaccggaggtggcagtggtagagttttctaag |
217 |
Q |
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| T |
45267736 |
gagaatgcaggggacaacagaggggaggaaggggaaattgggtatgacggtggaggtgtttgaggtcgcaccggaggtggcagtggtagagttttctaag |
45267637 |
T |
|
| Q |
218 |
tcagctggagacacacttgagtatgtaaagttctgtgaagatgaagttagaccttctctcaaagacattgtgtggagctggcagggtgatactcaatact |
317 |
Q |
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| T |
45267636 |
tcagctggagacacacttgagtatgtaaagttctgtgaagatgaagttagaccttctctcaaagacattgtgtggagctggcagggtgatactcaatact |
45267537 |
T |
|
| Q |
318 |
aatgctgc-ttatcttctttgtattcatatcattaattttcatttttacatgctagaaatatcacagacacagagtagctgtttccattagtattattca |
416 |
Q |
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| T |
45267536 |
aatgctgctttatcttctttgtattcatatcattaattttcatttttacatgctagaaatatcacagacacagcgtagctgtttccattagtattattca |
45267437 |
T |
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| Q |
417 |
tttagattgtattaccagattgataactgtgtgatatttcaatttcaattggagtttgtgaattatggattatt |
490 |
Q |
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| T |
45267436 |
tttagattgtattaccagattgataactgtgtgatatttcaatttcaatttgagtttgtgaattatggattatt |
45267363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 83 - 306
Target Start/End: Complemental strand, 880280 - 880057
Alignment:
| Q |
83 |
aatttgagggtaacggggaagaaggatttcatggtgagaatgcaggggacaacagaggggaggaaggggaaattgggtatgacggtggaggtgtttgagg |
182 |
Q |
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||||||| | |||| ||||||||||| || | ||||||||| |||| ||| |||||||| ||||| || | | ||||| ||||||| ||||||| |
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| T |
880280 |
aatttgaagataacagggaagaaggagtttgtcgtgagaatggagggcgcaagggaggggagaaagggaaaggtagcgatgacaatggaggtatttgagg |
880181 |
T |
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| Q |
183 |
tcgcaccggaggtggcagtggtagagttttctaagtcagctggagacacacttgagtatgtaaagttctgtgaagatgaagttagaccttctctcaaaga |
282 |
Q |
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| T |
880180 |
tggcgccggaggtggcagtggttgagttttctaagtgtggtggagacacattggagtatgttaagatgtgtgaggaacaattgagaccttcactcaaaga |
880081 |
T |
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| Q |
283 |
cattgtgtggagctggcagggtga |
306 |
Q |
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| T |
880080 |
tattgtttggagttggcaaggtga |
880057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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