View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7746_low_5 (Length: 519)
Name: NF7746_low_5
Description: NF7746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7746_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 119 - 503
Target Start/End: Complemental strand, 22250126 - 22249744
Alignment:
| Q |
119 |
tattctaattgagatcgattatttggtgttatattttcatttttcatttgtaccaaaagtgtaatttcatttgtcctcctttttaaaatgcacatgggtt |
218 |
Q |
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| T |
22250126 |
tattctaattgagatcgattatt-gttgttaaattttcatttttcctttgtaccaaaagtgtaatttcatttgtcctcctttttaaaatgcacatgggtt |
22250028 |
T |
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| Q |
219 |
tggtcatgagattttttaccattttagaagtcatccgaataacaaaaagaaacaaattctcacctgctctgtttcacacaaatcatgtatctcacataag |
318 |
Q |
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||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
22250027 |
tggtcatgagattttttactattttagaagtcatctggataacaaaaagaaacaaattctcacctgctc-gaatcacacaaatcatgtatctcacataag |
22249929 |
T |
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| Q |
319 |
acacatatatcatgattctccctattttataccaaaaacaacaacgagtgctataacaaaagagaccattcttctattatcttcccttctctcacttttc |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22249928 |
acacatatatcatgattctccctattttataccaaaaacaacaacgagtgctataacaaaagagaccattcttctattatcttcccttctctcacttttc |
22249829 |
T |
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| Q |
419 |
tccaatattttatatcatttctcaaccaaactcatatatcagtcttaatagcccctcattttagtacttcttatgggtttttagt |
503 |
Q |
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| T |
22249828 |
tccaatattttatatcatttctcaaccaaactcatatatcagtcttaatagcccctcattttagtacttcttatgggtttttagt |
22249744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 22 - 118
Target Start/End: Complemental strand, 22250504 - 22250408
Alignment:
| Q |
22 |
aaatatacagctatcgcagtaaattctattaacaacatactgaatgaaaacattcagcatttcagatatctttctctgtcaaccatgtataattttc |
118 |
Q |
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|||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22250504 |
aaatatacagctatcgtagtgtattttattaacaacatactgaatgaaaacattcagcatttcagatatctttctctgtcaaccatgtataattttc |
22250408 |
T |
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