View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7747_high_2 (Length: 433)
Name: NF7747_high_2
Description: NF7747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7747_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 15 - 417
Target Start/End: Complemental strand, 4383924 - 4383514
Alignment:
| Q |
15 |
atgagcacaaactgaatacaggaatttaaatttcacttcaattgaagtaactttagtacatgttctagtatgtaatcaattaattatgtcattcacatgt |
114 |
Q |
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| T |
4383924 |
atgagcacaaactgaatacaggaatttaaatttcacttcaattgaagtaactttagtacatgttctagtatgtaatcaattaattatgtcattcacatgt |
4383825 |
T |
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| Q |
115 |
aattcaatgactataacaactgaactgaatactgttattattttctttggtttgttcaataagtaaccttacggatcatagccatgtcctctaactttca |
214 |
Q |
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| T |
4383824 |
aattcaatgactataacaactgaactgaatactgttattattttctttggattgttcaataagtaaccttacggatcatagccatgtcctctaactttca |
4383725 |
T |
|
| Q |
215 |
tggctgtaatagacgattgcatatgccgagacctggcaataataaacggtcgcatatgtcgagaccaattttgattctaaagtgttatttgg-----cac |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
4383724 |
tggctgtaatagacgattgcatatgccgagacctggcaataataaacggtcgcatatgtcgagaccaattttgattctaaagtgttatttggcacgacac |
4383625 |
T |
|
| Q |
310 |
attttatcgccaaaaacacaccattcagagattgaccattaaatactttg---nnnnnnnnnnnntaaagctaagaacttggcggaaatcactgagaagt |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
4383624 |
attttatcgccaaaaacacaccattcagagattgaccattaaatactttgaaaaaaaaataaaaataaagctaagaacttggcggaaatcactgagaagt |
4383525 |
T |
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| Q |
407 |
ggtggtaaaac |
417 |
Q |
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| T |
4383524 |
ggtggtaaaac |
4383514 |
T |
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