View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7747_high_3 (Length: 413)
Name: NF7747_high_3
Description: NF7747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7747_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 24 - 228
Target Start/End: Complemental strand, 25814686 - 25814482
Alignment:
| Q |
24 |
agggacattaagttagcatgacccttacttttaatgataaattcttccggtcgggtagaagaagggctagtgcaagtgagattcattggctttcttgaga |
123 |
Q |
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| T |
25814686 |
agggacattaagttagcatgacccttacttttaatgataaattcttccggtcgggtagaagaagggctagtgcaagtgagattcattggctttcttgaga |
25814587 |
T |
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| Q |
124 |
aagaatttcaacaagtaaaaaggtaggcgacacaaggtttagaaacaaataaattcttacgcaccctgaaattttgttgggtacatgtatttgtagacaa |
223 |
Q |
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| T |
25814586 |
aagaatttcaacaagtaaaaaggtaggcgacacaaggtttagaaacaaataaattcttacgcaccctgaaattttgttgggtacatgtatttgtagacaa |
25814487 |
T |
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| Q |
224 |
aactt |
228 |
Q |
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||||| |
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| T |
25814486 |
aactt |
25814482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 371 - 404
Target Start/End: Complemental strand, 25814462 - 25814429
Alignment:
| Q |
371 |
taaaagcaaatattttttgaatggtgatattctt |
404 |
Q |
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|||||||||||||||||||||||||||| ||||| |
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| T |
25814462 |
taaaagcaaatattttttgaatggtgattttctt |
25814429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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