View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7747_high_7 (Length: 338)
Name: NF7747_high_7
Description: NF7747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7747_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 47333720 - 47333395
Alignment:
| Q |
1 |
tgtcgtgattgcagtataaaagaaaaatatga--ttcattgaattgaatatcc---ataaacaaaacaggataattaaaattgatcatgaattcagcaac |
95 |
Q |
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| T |
47333720 |
tgtcgtgattgcagtataaaagacaaatatgaaattcattgaattgaatatcccatataaacaaaacaggataattaaaattgatcatgaattcagcaac |
47333621 |
T |
|
| Q |
96 |
cccatctccaatttattacaaaaatcaacaataaaattacctaatgaccctcttcaaatcaaacaagaaaagaagcaatacgtttgaccatatcaataga |
195 |
Q |
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| T |
47333620 |
cccatctccaatttattacaaaaatcaacaataaaattacctaatgaccctcttcaaatcaaacaagaaaagaagcaatacgtttgaccatatcaataga |
47333521 |
T |
|
| Q |
196 |
attctgagtttcaggatgataaatctgaaaacaatgttcttcaccttcaacatgaacaagttccacatcacctttccaaccacttttcttaacagcatca |
295 |
Q |
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| T |
47333520 |
actctgagtttcaggatgataaatctgaaaacaatgttcttcaccttcaacatgaacaagttccacatcacctttccaaccacttttcttaacagcatca |
47333421 |
T |
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| Q |
296 |
tagtaccaaatccctctgtctcttaa |
321 |
Q |
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|||||||||||||||||||||||||| |
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| T |
47333420 |
tagtaccaaatccctctgtctcttaa |
47333395 |
T |
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