View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7747_low_1 (Length: 503)
Name: NF7747_low_1
Description: NF7747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7747_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 10 - 487
Target Start/End: Complemental strand, 9994706 - 9994226
Alignment:
| Q |
10 |
attatactgctatttggctatcatggtagtcgttaaaaacaaggacttcgccgttatcttcagattccatgtaatgatgggaatgctactggaaattgct |
109 |
Q |
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| T |
9994706 |
attatactgctatttggctatcatggtagtcgttaaaaacaaggacttccccgttatcttcagattccatgtaatgatgggaatgctactggaaattgct |
9994607 |
T |
|
| Q |
110 |
ctgcagatagtatgggttgtaagcaattttatgccacttctacacttcaagggaacacttgggatgtattattgggctggtgtagcgttggcatatattg |
209 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9994606 |
ctgcagatagtatgggttgtaagcaattttatgctacttctacacttcaagggaacacttgggatgtattattgggctggtgtagcgttggcatatattg |
9994507 |
T |
|
| Q |
210 |
tcatgatcatgcattccatcaggtgtgctcttcttggtactttttcgaacatcccggttattagtgaatcggctttccttcattccctacttaatatagg |
309 |
Q |
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| T |
9994506 |
tcatgatcatgcattccatcaggtgtgctcttcttggtactttttcgaacatcccggttattagtgaatcggctttccttcattccctacttaatatagg |
9994407 |
T |
|
| Q |
310 |
agggatccagtggccattttag---gtagtcaagagcatatttgtaaactatatgtgttgtatataaagagataagggttattagtggttttatataaag |
406 |
Q |
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| T |
9994406 |
agggatccagtggccattttaggaagtagtcaagagcatatttgtaaactatatgtgttgtatataaagagataagggttattagtggttttatataaag |
9994307 |
T |
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| Q |
407 |
agataagggttattgaaattctgataaggattctaacaattgtgctgttgtttttcttctctctccctcccaaattctcct |
487 |
Q |
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| T |
9994306 |
agataaaggttattgaaattctgataaggattctaacaattgtgctgttgtttttcttctctctccctcccaaattctcct |
9994226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 243; Significance: 1e-134; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 10 - 359
Target Start/End: Original strand, 38118096 - 38118448
Alignment:
| Q |
10 |
attatactgctatttggctatcatggtagtcgttaaaaacaaggacttcgccgttatcttcagattccatgtaatgatgggaatgctactggaaattgct |
109 |
Q |
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||||||||||||||||||||||||||| || || ||||| | ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38118096 |
attatactgctatttggctatcatggtggtggtaaaaaatagggacttccccattatcttcagattccatgtaatgatgggaatgctactggaaattgct |
38118195 |
T |
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| Q |
110 |
ctgcagatagtatgggttgtaagcaattttatgccacttctacacttcaagggaacacttgggatgtattattgggctggtgtagcgttggcatatattg |
209 |
Q |
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| T |
38118196 |
ctgcagattgtatgggttgcaagcaatttcatgccactgatacacttcaagggaacacttgggatgtattactgggctggtgtggcgttggcatatattg |
38118295 |
T |
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| Q |
210 |
tcatgatcatgcattccatcaggtgtgctcttcttggtactttttcgaacatcccggttattagtgaatcggctttccttcattccctacttaatatagg |
309 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||| |
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| T |
38118296 |
tcataatcatgcattccatcaggtgtgctcttcttggtacattttcgaacatccctgttattagcgaatcagctttccttcattccctacttaatatagg |
38118395 |
T |
|
| Q |
310 |
agggatccagtggccattttag---gtagtcaagagcatatttgtaaactata |
359 |
Q |
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|||| ||||| |||| |||||| ||||||||| || ||||||||||||||| |
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| T |
38118396 |
agggttccagcggccgttttaggaagtagtcaagggcttatttgtaaactata |
38118448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 71 - 353
Target Start/End: Original strand, 38112200 - 38112485
Alignment:
| Q |
71 |
agattccatgtaatgatgggaatgctactggaaattgctctgcagatagtatgggttgtaagcaattttatgccacttctacacttcaagggaacacttg |
170 |
Q |
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|||||||||||||||||||||||||||||||||| |||| | |||||||||| |||| |||||||| |||||| | ||||||| ||||||||||||| |
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| T |
38112200 |
agattccatgtaatgatgggaatgctactggaaactgctttccagatagtatctgttgcaagcaattacatgccattgatacactttaagggaacacttg |
38112299 |
T |
|
| Q |
171 |
ggatgtattattgggctggtgtagcgttggcatatattgtcatgatcatgcattccatcaggtgtgctcttcttggtactttttcgaacatcccggttat |
270 |
Q |
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|||||||||| ||||||||| | || ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| || ||||| |
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| T |
38112300 |
ggatgtattactgggctggtttggcattggcatatattgtcataatcatgcattccatcaggtgtgctcttcttggtacattttcgaacattcctgttat |
38112399 |
T |
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| Q |
271 |
tagtgaatcggctttccttcattccctacttaatataggagggatccagtggccattttag---gtagtcaagagcatatttgtaa |
353 |
Q |
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| T |
38112400 |
tagtgaatcagctctccttcattgcctatttaatataggagggttccagcggccgttttaggaagtagtcaagagcatatttgtaa |
38112485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 397 - 470
Target Start/End: Original strand, 38112618 - 38112691
Alignment:
| Q |
397 |
ttatataaagagataagggttattgaaattctgataaggattctaacaattgtgctgttgtttttcttctctct |
470 |
Q |
| |
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||||||||| | ||||||| |||||||||||||||| ||||||||| |||||| ||||||||||||| ||||| |
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| T |
38112618 |
ttatataaatatataagggatattgaaattctgatatggattctaataattgttgtgttgtttttcttgtctct |
38112691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 397 - 464
Target Start/End: Original strand, 38118572 - 38118637
Alignment:
| Q |
397 |
ttatataaagagataagggttattgaaattctgataaggattctaacaattgtgctgttgtttttctt |
464 |
Q |
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| T |
38118572 |
ttatataaagatataag--ttattgaaattctgatacggattctaataattgggctgttgtttttctt |
38118637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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