View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7747_low_10 (Length: 318)
Name: NF7747_low_10
Description: NF7747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7747_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 8 - 303
Target Start/End: Complemental strand, 2019313 - 2019018
Alignment:
| Q |
8 |
ccaggtgttggatatggccacttatccccgattcttcaattctccaagctacttgttcagcttcatccatactttcatgtcacatgtttcattccctcaa |
107 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2019313 |
ccaggtgttggatatggccacttattcccgattcttcaattctccaagctacttgttcagcttcatccatactttcatgtcacatgtttcattccctcaa |
2019214 |
T |
|
| Q |
108 |
ttgagtctctcccaaccgattcaaaaaccatcattcaaactcttccatcaaacatcaactgtacttttcttccatcagtgagctccaaagacttaccaca |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2019213 |
ttgagtctctcccaaccgattcaaaaaccatcattcaaactcttccatcaaacatcaactgtacttttcttccatcagtgagctccaaagacttaccaca |
2019114 |
T |
|
| Q |
208 |
agggattgctttagtacttcaaattcagctcacagtaattcactcactgccatctatacatcaggccttgaagtccttaactttaaggacaccctt |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2019113 |
agggattgctttagtacttcaaattcagctcacagtaattcactcactgccatctatacatcaggccttgaagtccttaactttaaggacaccctt |
2019018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 11 - 303
Target Start/End: Original strand, 1962502 - 1962794
Alignment:
| Q |
11 |
ggtgttggatatggccacttatccccgattcttcaattctccaagctacttgttcagcttcatccatactttcatgtcacatgtttcattccctcaattg |
110 |
Q |
| |
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|||||||||||| ||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |
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| T |
1962502 |
ggtgttggatatagccacttattcccaattcttcaattctccaaactacttgttcagcttcatccatactttcatgtcacatgcttcattccctcacttg |
1962601 |
T |
|
| Q |
111 |
agtctctcccaaccgattcaaaaaccatcattcaaactcttccatcaaacatcaactgtacttttcttccatcagtgagctccaaagacttaccacaagg |
210 |
Q |
| |
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||||||||||| ||||||||||| || || ||||||||||||||||||||| |||||||||||||||| |||||| ||| || ||| |||||||||| |
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| T |
1962602 |
gttctctcccaactgattcaaaaacaatacttgaaactcttccatcaaacatcagctgtacttttcttccaccagtgaactctaatgacctaccacaagg |
1962701 |
T |
|
| Q |
211 |
gattgctttagtacttcaaattcagctcacagtaattcactcactgccatctatacatcaggccttgaagtccttaactttaaggacaccctt |
303 |
Q |
| |
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| ||||||||| |||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
1962702 |
ggttgctttagcccttcaacttcagctcacactaactcactcactgccatctatacatcaggccttgaagtccttaactttaagggcaccctt |
1962794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 8 - 303
Target Start/End: Complemental strand, 2015930 - 2015635
Alignment:
| Q |
8 |
ccaggtgttggatatggccacttatccccgattcttcaattctccaagctacttgttcagcttcatccatactttcatgtcacatgtttcattccctcaa |
107 |
Q |
| |
|
||||||||||||||| |||| || | | |||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||| |
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|
| T |
2015930 |
ccaggtgttggatatagccatttggtctctattcttcaattctccaagagacttgttcagcttcatccaaactttcatgtcacatgcttcattccctcac |
2015831 |
T |
|
| Q |
108 |
ttgagtctctcccaaccgattcaaaaaccatcattcaaactcttccatcaaacatcaactgtacttttcttccatcagtgagctccaaagacttaccaca |
207 |
Q |
| |
|
||| ||||||||||| ||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||| |||||| |||||| ||| ||||||| |
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|
| T |
2015830 |
ttggttctctcccaactgattcaaaaacaatccttcaaactcttccatcaaacatcagctgtacttttcttccaccagtgaactccaatgacctaccaca |
2015731 |
T |
|
| Q |
208 |
agggattgctttagtacttcaaattcagctcacagtaattcactcactgccatctatacatcaggccttgaagtccttaactttaaggacaccctt |
303 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
2015730 |
agggattgctttagtacttcaacttcagctcacactgactcactcactgccatctatacatcaggccttgaagtccttaactttaaagacaccctt |
2015635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 8 - 212
Target Start/End: Complemental strand, 2005536 - 2005332
Alignment:
| Q |
8 |
ccaggtgttggatatggccacttatccccgattcttcaattctccaagctacttgttcagcttcatccatactttcatgtcacatgtttcattccctcaa |
107 |
Q |
| |
|
||||||||||||||| |||| || | | |||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
2005536 |
ccaggtgttggatatagccatttggtctctattcttcaattctccaagagacttgttcaacttcatccaaactttcatgtcacatgtttcattccctcac |
2005437 |
T |
|
| Q |
108 |
ttgagtctctcccaaccgattcaaaaaccatcattcaaactcttccatcaaacatcaactgtacttttcttccatcagtgagctccaaagacttaccaca |
207 |
Q |
| |
|
||| |||| | |||| ||||| | ||| |||||||||||||||||||||||||| ||||||||||||| | |||| | | || ||| ||||||| |
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| T |
2005436 |
ttggatctccctcaactaccacaaaatctatccttcaaactcttccatcaaacatcaaccatacttttcttccacctgtgaaccctaatgacctaccaca |
2005337 |
T |
|
| Q |
208 |
aggga |
212 |
Q |
| |
|
||||| |
|
|
| T |
2005336 |
aggga |
2005332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 8 - 212
Target Start/End: Complemental strand, 2008916 - 2008712
Alignment:
| Q |
8 |
ccaggtgttggatatggccacttatccccgattcttcaattctccaagctacttgttcagcttcatccatactttcatgtcacatgtttcattccctcaa |
107 |
Q |
| |
|
||||||||||||||| |||| || ||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| | |
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|
| T |
2008916 |
ccaggtgttggatatagccatttggtccctattcttcaattctccaagagacttgttcagcttcatccaaactttcatgtcacatgtttcattcccacgc |
2008817 |
T |
|
| Q |
108 |
ttgagtctctcccaaccgattcaaaaaccatcattcaaactcttccatcaaacatcaactgtacttttcttccatcagtgagctccaaagacttaccaca |
207 |
Q |
| |
|
||| |||| | ||| | ||||| | ||| |||||||||||||||||||||||||| |||||||||||| | |||| | |||| ||| ||||||| |
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| T |
2008816 |
ttggatctccctcaaatgccacaaaatctatccttcaaactcttccatcaaacatcaaccacacttttcttccacctgtgaaccccaatgacctaccaca |
2008717 |
T |
|
| Q |
208 |
aggga |
212 |
Q |
| |
|
||||| |
|
|
| T |
2008716 |
aggga |
2008712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 8 - 212
Target Start/End: Original strand, 1968099 - 1968303
Alignment:
| Q |
8 |
ccaggtgttggatatggccacttatccccgattcttcaattctccaagctacttgttcagcttcatccatactttcatgtcacatgtttcattccctcaa |
107 |
Q |
| |
|
||||||||||||||| | || || ||| |||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||| || |
|
|
| T |
1968099 |
ccaggtgttggatatagtcatttggtccctattcttcaattctccaagagacttgttcaacttcatccagactttcatgtcacatgtttcattcccacac |
1968198 |
T |
|
| Q |
108 |
ttgagtctctcccaaccgattcaaaaaccatcattcaaactcttccatcaaacatcaactgtacttttcttccatcagtgagctccaaagacttaccaca |
207 |
Q |
| |
|
||| |||| | ||| | ||||| | ||| |||||||||||||||||||||||||| |||||||||||| | |||| |||| ||| ||||||| |
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|
| T |
1968199 |
ttggatctccctcaaatgccacaaaatctatccttcaaactcttccatcaaacatcaaccacacttttcttccacctgtgaatcccaatgacctaccaca |
1968298 |
T |
|
| Q |
208 |
aggga |
212 |
Q |
| |
|
||||| |
|
|
| T |
1968299 |
aggga |
1968303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 2013463 - 2013377
Alignment:
| Q |
8 |
ccaggtgttggatatggccacttatccccgattcttcaattctccaagctacttgttcagcttcatccatactttcatgtcacatgt |
94 |
Q |
| |
|
||||||||||||||| | ||||||| ||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2013463 |
ccaggtgttggatatagtcacttattcccaattcttcaattttcgaagctacttgttcagcttcatccatactttcatgtcacatgt |
2013377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 159
Target Start/End: Complemental strand, 2012531 - 2012380
Alignment:
| Q |
8 |
ccaggtgttggatatggccacttatccccgattcttcaattctccaagctacttgttcagcttcatccatactttcatgtcacatgtttcattccctcaa |
107 |
Q |
| |
|
|||||||| || ||||| |||||| ||| |||||||| ||||| ||| ||||| | ||||||||||| || |||||||||||||| |||||||| || |
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|
| T |
2012531 |
ccaggtgtcgggtatggacacttagtccctattcttcatttctcaaagttacttatccagcttcatccggacattcatgtcacatgtatcattcccacac |
2012432 |
T |
|
| Q |
108 |
ttgagtctctcccaaccgattcaaaaaccatcattcaaactcttccatcaaa |
159 |
Q |
| |
|
||| |||| ||||| ||| |||||||| ||||||| ||||||||||| |
|
|
| T |
2012431 |
ttggttctcccccaagttcctcagaaaccatccttcaaacccttccatcaaa |
2012380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 5901708 - 5901772
Alignment:
| Q |
38 |
attcttcaattctccaagctacttgttcagcttcatccatactttcatgtcacatgtttcattcc |
102 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |||||| ||||||||||||| || |||||||| |
|
|
| T |
5901708 |
attcttgaattctccaagctacttgttcagctccatccagactttcatgtcacttgcttcattcc |
5901772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 166
Target Start/End: Original strand, 18189464 - 18189622
Alignment:
| Q |
8 |
ccaggtgttggatatggccacttatccccgattcttcaattctccaagctacttgttcagcttcatccatactttcatgtcacatgtttcattccctcaa |
107 |
Q |
| |
|
||||||||||| ||||| |||||| ||| |||||||||||||| ||| ||||| | || ||||||||| || |||||| ||||||| |||||| | || |
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|
| T |
18189464 |
ccaggtgttgggtatggacacttagtccctattcttcaattctcaaagttacttatccatcttcatccagacattcatgccacatgtatcattcgcacac |
18189563 |
T |
|
| Q |
108 |
ttgagtctctcccaaccgattcaaaaaccatcattcaaactcttccatcaaacatcaac |
166 |
Q |
| |
|
||| |||| ||||| ||| || ||||| ||||||||||||||||||| |||||| |
|
|
| T |
18189564 |
ttggttctcccccaagttcctcagaacccatccttcaaactcttccatcaaatatcaac |
18189622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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