View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7747_low_11 (Length: 304)
Name: NF7747_low_11
Description: NF7747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7747_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 16 - 288
Target Start/End: Complemental strand, 49684379 - 49684107
Alignment:
| Q |
16 |
ataaatcaataaagaaaaaacaaccaattttcaagatatgtcacattactaatagagtatacataagtttttggctaacctttggatcctatgacaagtg |
115 |
Q |
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| T |
49684379 |
ataaatcaataaagaaaaaacaaccaattttcaagatatgtcacattactaatagagtatacataagtttttggctaacctttggatcctatgacaagtg |
49684280 |
T |
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| Q |
116 |
ctgatgaaatcttatcattatctactgaaatattaaaggttcaatttactagtgtcatattacattcggctcgccgattgaccactgacattagaagcag |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49684279 |
ctgatgaaatcttatcattatctactgaaatattaaaggttcaatttactagtgtcatattacattcggctcgccgattgaccactgacattagaagcag |
49684180 |
T |
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| Q |
216 |
tcgattcactatacgatttatctgtcatagctgtaggaggtgttaacttcttattcttcaacaatttcatctc |
288 |
Q |
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| T |
49684179 |
tcgattcactatacgatttatctgtcatagctgtaggaggtgttaacttcttattcttcaacaatttcatctc |
49684107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 166 - 288
Target Start/End: Complemental strand, 49676198 - 49676076
Alignment:
| Q |
166 |
agtgtcatattacattcggctcgccgattgaccactgacattagaagcagtcgattcactatacgatttatctgtcatagctgtaggaggtgttaacttc |
265 |
Q |
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| T |
49676198 |
agtgttatattaaatccggcttgctgactgaccgctgacattagaagtagtcgattcactatcccatttatccgtcacacccgtaggagacgttaacttt |
49676099 |
T |
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| Q |
266 |
ttattcttcaacaatttcatctc |
288 |
Q |
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| T |
49676098 |
ttattcttcaacaatttcatctc |
49676076 |
T |
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