View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7747_low_15 (Length: 202)
Name: NF7747_low_15
Description: NF7747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7747_low_15 |
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| [»] scaffold0060 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 12 - 185
Target Start/End: Complemental strand, 48769844 - 48769671
Alignment:
| Q |
12 |
tattattcttctacattcttgacataaaaggagggaataaacttccctcctcaatatctttttcaagttgctgctcttgctcatcacgcatatatgtctc |
111 |
Q |
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|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |
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| T |
48769844 |
tattcttcttctgcattcttgacataaaaggagggaataaacttccctcctcaatatctttttcaaggtgctgctcttgctcatcacgcatatttgtctc |
48769745 |
T |
|
| Q |
112 |
ctcatcagaagcatgatcagaatccaaaccatcatcccaaaatttgctcataagtttttcacttttcttgcaag |
185 |
Q |
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|||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||| |
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| T |
48769744 |
ctcatcaggagcatgatcagaatccaaaccatcatcccagaatttgctcaaaagtttttcactttccttgcaag |
48769671 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 17 - 185
Target Start/End: Original strand, 43404019 - 43404187
Alignment:
| Q |
17 |
ttcttctacattcttgacataaaaggagggaataaacttccctcctcaatatctttttcaagttgctgctcttgctcatcacgcatatatgtctcctcat |
116 |
Q |
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||||||| | ||||||| |||||||||| |||||||||||||||| ||| ||| | ||||| | ||||||||||||||| | ||||| | ||||||| |
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| T |
43404019 |
ttcttcttccttcttgatataaaaggagtgaataaacttccctccgtaatgtctctatcaaggttctgctcttgctcatcgctcatatccttatcctcat |
43404118 |
T |
|
| Q |
117 |
cagaagcatgatcagaatccaaaccatcatcccaaaatttgctcataagtttttcacttttcttgcaag |
185 |
Q |
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| ||||||||||||||||||| ||||| || | || |||| || ||||||||||||||||||||||| |
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| T |
43404119 |
gataagcatgatcagaatccaattcatcagcctataacttgcgcagaagtttttcacttttcttgcaag |
43404187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 122; Significance: 8e-63; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 122; E-Value: 8e-63
Query Start/End: Original strand, 12 - 185
Target Start/End: Original strand, 1558495 - 1558668
Alignment:
| Q |
12 |
tattattcttctacattcttgacataaaaggagggaataaacttccctcctcaatatctttttcaagttgctgctcttgctcatcacgcatatatgtctc |
111 |
Q |
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|||| ||||||| | |||||||||||||| ||| |||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||| |||||| |
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| T |
1558495 |
tattcttcttctgccttcttgacataaaaagagtgaataaacttcccttctcaatatctctttcaaggtgctgctcttgctcatcacgcatatttgtctc |
1558594 |
T |
|
| Q |
112 |
ctcatcagaagcatgatcagaatccaaaccatcatcccaaaatttgctcataagtttttcacttttcttgcaag |
185 |
Q |
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||||||||||||||||||| |||||||||||||| |||| |||||||||| ||||||||||||||||||||||| |
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| T |
1558595 |
ctcatcagaagcatgatcaaaatccaaaccatcagcccagaatttgctcaaaagtttttcacttttcttgcaag |
1558668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 12 - 118
Target Start/End: Original strand, 3959059 - 3959165
Alignment:
| Q |
12 |
tattattcttctacattcttgacataaaaggagggaataaacttccctcctcaatatctttttcaagttgctgctcttgctcatcacgcatatatgtctc |
111 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||| |||||| | |||||||| | |||||| ||||| ||||| |
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| T |
3959059 |
tattattcttctgcattcttgacataaaaggagtgaataaactttcctcctcaatatctccttcaaggttctgctcttccacatcactcatatccgtctc |
3959158 |
T |
|
| Q |
112 |
ctcatca |
118 |
Q |
| |
|
|||||| |
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|
| T |
3959159 |
ttcatca |
3959165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 39735767 - 39735714
Alignment:
| Q |
17 |
ttcttctacattcttgacataaaaggagggaataaacttccctcctcaatatct |
70 |
Q |
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||||||| | |||||||||||||||||| |||||||||||||||||||||||| |
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| T |
39735767 |
ttcttctgccttcttgacataaaaggagtaaataaacttccctcctcaatatct |
39735714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 109; Significance: 5e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 17 - 185
Target Start/End: Complemental strand, 18979808 - 18979640
Alignment:
| Q |
17 |
ttcttctacattcttgacataaaaggagggaataaacttccctcctcaatatctttttcaagttgctgctcttgctcatcacgcatatatgtctcctcat |
116 |
Q |
| |
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||||||| | ||||||||| ||||| || ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||| |||| |
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| T |
18979808 |
ttcttctgccttcttgacaaaaaagaagtgaataaacttccctcctcaatatctctttcaaggtgctgctcttgctcatcacgcatatctgtctcatcat |
18979709 |
T |
|
| Q |
117 |
cagaagcatgatcagaatccaaaccatcatcccaaaatttgctcataagtttttcacttttcttgcaag |
185 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||| ||||| |||| |||||||||| |||||||||||| |
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| T |
18979708 |
cagaagcatgatcagaatccaaaccttcagcccagaatttactcagaagtttttcatttttcttgcaag |
18979640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 12 - 185
Target Start/End: Complemental strand, 26155231 - 26155058
Alignment:
| Q |
12 |
tattattcttctacattcttgacataaaaggagggaataaacttccctcctcaatatctttttcaagttgctgctcttgctcatcacgcatatatgtctc |
111 |
Q |
| |
|
|||| ||||||| | |||||||||||||||||| ||||||||||||||||||||||||| ||||||| | ||||||||||||||||| ||||| ||||| |
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| T |
26155231 |
tattcttcttctgccttcttgacataaaaggagtgaataaacttccctcctcaatatctctttcaaggttctgctcttgctcatcactcatatccgtctc |
26155132 |
T |
|
| Q |
112 |
ctcatcagaagcatgatcagaatccaaaccatcatcccaaaatttgctcataagtttttcacttttcttgcaag |
185 |
Q |
| |
|
|||||||| |||||| ||||||||||| ||| || |||| |||||||||| ||||||||||||||||||||||| |
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| T |
26155131 |
ctcatcaggagcatggtcagaatccaacccaccagcccagaatttgctcagaagtttttcacttttcttgcaag |
26155058 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 94; Significance: 4e-46; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 12 - 185
Target Start/End: Complemental strand, 40275090 - 40274917
Alignment:
| Q |
12 |
tattattcttctacattcttgacataaaaggagggaataaacttccctcctcaatatctttttcaagttgctgctcttgctcatcacgcatatatgtctc |
111 |
Q |
| |
|
|||||||||||| | |||||||||||||||||| |||||||||||||||| |||||| | | ||||| | ||||||||||||||||| ||||| |||| |
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| T |
40275090 |
tattattcttctgccttcttgacataaaaggagtgaataaacttccctccgcaatatttctatcaaggttctgctcttgctcatcactcatatccttctc |
40274991 |
T |
|
| Q |
112 |
ctcatcagaagcatgatcagaatccaaaccatcatcccaaaatttgctcataagtttttcacttttcttgcaag |
185 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||| |||||||| | ||||||||||||||||||||||| |
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|
| T |
40274990 |
ctcatcagaagcatgatcagaatccaatttatcagcccataatttgcttagaagtttttcacttttcttgcaag |
40274917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 13698082 - 13697981
Alignment:
| Q |
17 |
ttcttctacattcttgacataaaaggagggaataaacttccctcctcaatatctttttcaagttgctgctcttgctcatcacgcatatatgtctcctcat |
116 |
Q |
| |
|
||||||| | |||||||||||||||||| |||||||| || |||||||||||| |||||| | |||||||| ||||||| | ||| |||||| |||| |
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| T |
13698082 |
ttcttctgccttcttgacataaaaggagtaaataaactcccatcctcaatatctccttcaaggttatgctcttgatcatcactcctatttgtctcttcat |
13697983 |
T |
|
| Q |
117 |
ca |
118 |
Q |
| |
|
|| |
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|
| T |
13697982 |
ca |
13697981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 118
Target Start/End: Complemental strand, 14555830 - 14555739
Alignment:
| Q |
27 |
ttcttgacataaaaggagggaataaacttccctcctcaatatctttttcaagttgctgctcttgctcatcacgcatatatgtctcctcatca |
118 |
Q |
| |
|
|||| ||||||||||||| |||| |||| ||||| |||| |||| |||||| | |||||||||||| |||| |||| ||||||| |||||| |
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|
| T |
14555830 |
ttctggacataaaaggagtgaatgaactcccctcatcaaaatctccttcaagattctgctcttgctcgtcactcatagatgtctcttcatca |
14555739 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 60; Significance: 8e-26; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 12 - 119
Target Start/End: Complemental strand, 18878 - 18771
Alignment:
| Q |
12 |
tattattcttctacattcttgacataaaaggagggaataaacttccctcctcaatatctttttcaagttgctgctcttgctcatcacgcatatatgtctc |
111 |
Q |
| |
|
|||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||| |||||| | ||||||||||||||||| | ||| ||||| |
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| T |
18878 |
tattattcttctgccttcttgacataaaaggagtgaataaacttccctcctcaatatctccttcaagcttctgctcttgctcatcactcgtatccgtctc |
18779 |
T |
|
| Q |
112 |
ctcatcag |
119 |
Q |
| |
|
||||||| |
|
|
| T |
18778 |
ttcatcag |
18771 |
T |
|
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