View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7747_low_5 (Length: 375)
Name: NF7747_low_5
Description: NF7747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7747_low_5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 31781292 - 31781666
Alignment:
| Q |
1 |
atccaagccttaaacgacgcagtagccgtcgcaaaacgccgcggacacgcacaaacaacatcgcttcacgcaatatccgctttgttatctcttccatctt |
100 |
Q |
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| T |
31781292 |
atccaagctttaaacgacgcagtagccgtcgcaaaacgccgcggacacgcacaaacaacctcgcttcacgcaatatccgctttgttatctcttccatctt |
31781391 |
T |
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| Q |
101 |
cttcaatcctccgcgatgcatgttctcgttcgcgaaactcggcttactcaccacgcttacagttcaaagcacttgatctttgtctctcagtatcacttga |
200 |
Q |
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| T |
31781392 |
cttcaatcctccgcgacgcatgttctcgttcgagaaactcggcttactcaccacgcttacagttcaaagcacttgatctttgtctctcagtatcacttga |
31781491 |
T |
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| Q |
201 |
ccgttcaccttcttcgcataacaacgtttcatctgatcatgaaccaccggtttcgaattcgcttatggcggcgattaaacgatctcaggcgaatcaacgc |
300 |
Q |
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| T |
31781492 |
ccgttcaccttcttcgcataacaacgtttcatctgatcatgaaccaccggtttcgaattcgcttatggcggcgattaaacgatctcaggcgaatcaacgg |
31781591 |
T |
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| Q |
301 |
cgtcatcctgataatttccctttttatcatcagcagcaacagttgccgagtcaacaaacgctttctgtttgttct |
375 |
Q |
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| T |
31781592 |
cgtcatcctgataatttccatttctatcatcagcagcaacagttgcagagtcaacaaacgttttctgttagttct |
31781666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 47 - 233
Target Start/End: Complemental strand, 19636367 - 19636181
Alignment:
| Q |
47 |
acgcacaaacaacatcgcttcacgcaatatccgctttgttatctcttccatcttcttcaatcctccgcgatgcatgttctcgttcgcgaaactcggctta |
146 |
Q |
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||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| | ||||||||||||| |
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| T |
19636367 |
acgcacaaacaacatcgattcatgcaatatccgctttgttatcccttccatcttcttcaatcctccgcgacgcatgttctcgttggagaaactcggctta |
19636268 |
T |
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| Q |
147 |
ctcaccacgcttacagttcaaagcacttgatctttgtctctcagtatcacttgaccgttcaccttcttcgcataacaacgtttcatc |
233 |
Q |
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| T |
19636267 |
ctcaccacgcttacagttcaacgcacttgatctttgtctctcagtatcacttgaccgttcaccttcttcgcataacaacgtttcatc |
19636181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 247 - 302
Target Start/End: Original strand, 30106680 - 30106735
Alignment:
| Q |
247 |
ccggtttcgaattcgcttatggcggcgattaaacgatctcaggcgaatcaacgccg |
302 |
Q |
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|||||||||||||| || ||||||||||| ||| | |||||||||||||||||||| |
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| T |
30106680 |
ccggtttcgaattctctcatggcggcgatcaaaaggtctcaggcgaatcaacgccg |
30106735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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