View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7747_low_9 (Length: 319)
Name: NF7747_low_9
Description: NF7747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7747_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 162; Significance: 2e-86; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 127 - 296
Target Start/End: Complemental strand, 26492477 - 26492309
Alignment:
| Q |
127 |
cagattgagatgttatcaaggttgaaccacaagaattttgtgaatcttattggttattgtgaagagaataagccattcacaaggatgatggtttttgagt |
226 |
Q |
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| T |
26492477 |
cagattgagatgttatcaaggttgaaccacaagaattttgtgaatcttattggttattgtgaagagaataagccattcacaaggatgatggtttttgagt |
26492378 |
T |
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| Q |
227 |
atgctccgaatggaacgctgtttgagcatctacatagtaagtcctgttatgtttcacaatttagttgcag |
296 |
Q |
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| T |
26492377 |
atgctccgaatggaacgctgtttgagcatctacatagtaagtcctgttatg-ttcacaatttagttgcag |
26492309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 90
Target Start/End: Complemental strand, 26492591 - 26492514
Alignment:
| Q |
13 |
aatatgcaagctcagttccgaaagaaggtattcaaaggcaacaaatatagcaaatgaatcacacattttctgatctgg |
90 |
Q |
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| T |
26492591 |
aatatgcaagctcagttccgaaagaaggtattcaaaggcaacaaatatagcaaatgaatcacacattttctgatctgg |
26492514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 261
Target Start/End: Complemental strand, 32067148 - 32067026
Alignment:
| Q |
139 |
ttatcaaggttgaaccacaagaattttgtgaatcttattggttattgtgaagagaataagccattcacaaggatgatggtttttgagtatgctccgaatg |
238 |
Q |
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| T |
32067148 |
ttatcaaagatgaaccacaagaatttcgtaaatcttcttggattttgtgaagaagacgagcctttcaccagaatggtggtttttgaatatgccccaaatg |
32067049 |
T |
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| Q |
239 |
gaacgctgtttgagcatctacat |
261 |
Q |
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| T |
32067048 |
gaacactctttgaacatttacat |
32067026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 149 - 264
Target Start/End: Complemental strand, 37747884 - 37747769
Alignment:
| Q |
149 |
tgaaccacaagaattttgtgaatcttattggttattgtgaagagaataagccattcacaaggatgatggtttttgagtatgctccgaatggaacgctgtt |
248 |
Q |
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| T |
37747884 |
tgaaccacaagaattttgtcaatcttattggatattgtgaagaagaagagcctttcaccagaatgttggtttttgaatatgccccaaatggaacactatt |
37747785 |
T |
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| Q |
249 |
tgagcatctacatagt |
264 |
Q |
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| T |
37747784 |
tgagcatttacatagt |
37747769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 266
Target Start/End: Complemental strand, 35832247 - 35832150
Alignment:
| Q |
169 |
aatcttattggttattgtgaaga-gaataagccattcacaaggatgatggtttttgagtatgctccgaatggaacgctgtttgagcatctacatagtaa |
266 |
Q |
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|||||||||||||| ||||| || ||| || |||||||||||||||||||| || ||||||||||| ||||||| | || |||||||||||| |||| |
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| T |
35832247 |
aatcttattggttactgtgacgaagaagaa-ccattcacaaggatgatggtgttggagtatgctccaaatggaagcttattcgagcatctacatggtaa |
35832150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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