View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7748_high_4 (Length: 253)

Name: NF7748_high_4
Description: NF7748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7748_high_4
NF7748_high_4
[»] chr2 (14 HSPs)
chr2 (1-241)||(2894020-2894257)
chr2 (2-77)||(15011338-15011412)
chr2 (1-41)||(14229394-14229434)
chr2 (1-41)||(16514481-16514521)
chr2 (1-35)||(38933644-38933678)
chr2 (1-41)||(2828641-2828681)
chr2 (1-41)||(6722008-6722048)
chr2 (15-71)||(14464567-14464622)
chr2 (2-41)||(6217265-6217304)
chr2 (1-32)||(29508741-29508772)
chr2 (2-41)||(29925611-29925650)
chr2 (1-72)||(37762012-37762082)
chr2 (2-41)||(37961764-37961803)
chr2 (2-30)||(14470644-14470672)
[»] chr4 (20 HSPs)
chr4 (1-78)||(55090001-55090077)
chr4 (1-78)||(47404590-47404666)
chr4 (1-78)||(50384110-50384186)
chr4 (1-41)||(6271759-6271799)
chr4 (1-41)||(23444310-23444350)
chr4 (2-78)||(31430466-31430541)
chr4 (2-78)||(40789237-40789312)
chr4 (1-41)||(42375067-42375107)
chr4 (1-41)||(47661899-47661939)
chr4 (2-41)||(52028607-52028646)
chr4 (1-35)||(51265502-51265536)
chr4 (20-78)||(55090072-55090129)
chr4 (5-78)||(24006075-24006147)
chr4 (2-35)||(45591457-45591490)
chr4 (1-33)||(30861823-30861855)
chr4 (1-41)||(35682223-35682263)
chr4 (2-41)||(25818414-25818453)
chr4 (24-75)||(55089885-55089935)
chr4 (5-35)||(47762669-47762699)
chr4 (125-157)||(9542580-9542612)
[»] chr8 (11 HSPs)
chr8 (1-78)||(8243393-8243469)
chr8 (1-71)||(34229698-34229767)
chr8 (1-41)||(5033218-5033258)
chr8 (1-41)||(33841632-33841672)
chr8 (1-41)||(35441010-35441050)
chr8 (1-78)||(34541808-34541884)
chr8 (2-41)||(10086815-10086854)
chr8 (1-35)||(6296662-6296696)
chr8 (1-35)||(8796479-8796513)
chr8 (5-35)||(31159912-31159942)
chr8 (2-34)||(4958657-4958689)
[»] chr1 (25 HSPs)
chr1 (2-71)||(4609054-4609122)
chr1 (1-70)||(1819502-1819570)
chr1 (2-78)||(8337857-8337931)
chr1 (1-78)||(46333951-46334027)
chr1 (2-71)||(47303453-47303521)
chr1 (1-41)||(741543-741583)
chr1 (1-41)||(17127605-17127645)
chr1 (2-78)||(28928784-28928859)
chr1 (1-41)||(29179638-29179678)
chr1 (1-41)||(32540789-32540829)
chr1 (1-80)||(37155103-37155182)
chr1 (1-41)||(48993958-48993998)
chr1 (2-41)||(1091585-1091624)
chr1 (2-41)||(29371426-29371465)
chr1 (1-41)||(5995426-5995466)
chr1 (1-33)||(15220868-15220900)
chr1 (1-41)||(45728344-45728384)
chr1 (2-33)||(36290456-36290487)
chr1 (1-32)||(44706834-44706865)
chr1 (1-71)||(9157367-9157436)
chr1 (123-156)||(32162459-32162492)
chr1 (1-41)||(33219630-33219670)
chr1 (5-41)||(34062270-34062306)
chr1 (11-87)||(38674501-38674576)
chr1 (2-78)||(48498473-48498547)
[»] chr7 (12 HSPs)
chr7 (2-78)||(27028798-27028873)
chr7 (2-41)||(15027600-15027639)
chr7 (2-79)||(34854699-34854775)
chr7 (5-70)||(41018241-41018305)
chr7 (1-41)||(11016926-11016966)
chr7 (2-41)||(7671952-7671991)
chr7 (1-32)||(38975862-38975893)
chr7 (9-71)||(4649387-4649448)
chr7 (1-79)||(10419515-10419592)
chr7 (2-72)||(29053325-29053394)
chr7 (4-41)||(4290605-4290642)
chr7 (5-41)||(42628356-42628392)
[»] chr5 (15 HSPs)
chr5 (1-71)||(16439195-16439264)
chr5 (1-41)||(2953247-2953287)
chr5 (1-41)||(3899896-3899936)
chr5 (1-41)||(16971201-16971241)
chr5 (2-79)||(19655216-19655301)
chr5 (1-41)||(29699424-29699464)
chr5 (1-71)||(3180072-3180141)
chr5 (1-41)||(2093978-2094018)
chr5 (2-78)||(16802502-16802577)
chr5 (1-53)||(26662456-26662508)
chr5 (1-53)||(26934051-26934103)
chr5 (1-35)||(28818974-28819008)
chr5 (1-41)||(12913860-12913900)
chr5 (1-29)||(19598389-19598417)
chr5 (1-41)||(38134414-38134454)
[»] chr3 (13 HSPs)
chr3 (1-78)||(33689233-33689309)
chr3 (1-71)||(43139721-43139790)
chr3 (5-78)||(55223293-55223365)
chr3 (2-70)||(29031727-29031794)
chr3 (1-41)||(30476515-30476555)
chr3 (2-41)||(47677296-47677335)
chr3 (1-78)||(49418696-49418772)
chr3 (1-41)||(30734443-30734483)
chr3 (1-41)||(47492088-47492128)
chr3 (2-41)||(1801487-1801526)
chr3 (1-35)||(51046120-51046154)
chr3 (2-79)||(18321709-18321785)
chr3 (123-159)||(54747956-54747992)
[»] scaffold0047 (1 HSPs)
scaffold0047 (2-72)||(63815-63884)
[»] chr6 (8 HSPs)
chr6 (1-79)||(551169-551246)
chr6 (1-78)||(10521854-10521930)
chr6 (1-41)||(12343157-12343197)
chr6 (1-33)||(13043514-13043546)
chr6 (1-42)||(24587518-24587559)
chr6 (20-72)||(10521925-10521976)
chr6 (123-159)||(11615349-11615385)
chr6 (1-41)||(24618642-24618682)
[»] scaffold1033 (1 HSPs)
scaffold1033 (1-41)||(2270-2310)
[»] scaffold1029 (1 HSPs)
scaffold1029 (1-41)||(2270-2310)
[»] scaffold0586 (1 HSPs)
scaffold0586 (1-41)||(7088-7128)
[»] scaffold0016 (1 HSPs)
scaffold0016 (1-41)||(49744-49784)
[»] scaffold0481 (1 HSPs)
scaffold0481 (2-41)||(2928-2967)


Alignment Details
Target: chr2 (Bit Score: 86; Significance: 3e-41; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 2894020 - 2894257
Alignment:
Q  1 cttgtgtttctctctctttcacaagcattgtgacactgtgaattaaccaatgttactcaactctatgtcacctaagtgtattccattgtaaagtgacgta 100  Q
    ||||| |||||||||||||||||||||||||||||||||| ||| |||||||| |  ||||||||||||||| || ||||| ||||| ||||| ||| ||    
T  2894020 cttgtatttctctctctttcacaagcattgtgacactgtg-attgaccaatgtcatccaactctatgtcacccaaatgtatcccattataaagcgacata 2894118  T
Q  101 taatttaaaac-aannnnnnnncctaaagtaacatataatttgggacggaaggagtagtatataccatacggctgcctaatgtgcattaatctcttgctt 199  Q
    |||||| |||| ||          |||| ||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||  ||||||||    
T  2894119 taatttgaaacaaatttttttttttaaaataacatataatttgggatggaa-gagtagtatataccgtacggctgcctaatgtgcattaagttcttgctt 2894217  T
Q  200 annnnnnnnnccccaatgggaaatgtcagtaattaaaatatt 241  Q
    |         ||||||||||||||||||||||||||||||||    
T  2894218 a--tttttttccccaatgggaaatgtcagtaattaaaatatt 2894257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 77
Target Start/End: Original strand, 15011338 - 15011412
Alignment:
Q  2 ttgtgtttctctctctttcacaagcattgtgacactgtgaattaaccaatgttactcaactctatgtcacctaagt 77  Q
    |||||||||||||||||||||||||||||||||| |||| |||  ||||||| |||||||||||||||||| ||||    
T  15011338 ttgtgtttctctctctttcacaagcattgtgacattgtg-attggccaatgtcactcaactctatgtcacccaagt 15011412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 14229434 - 14229394
Alignment:
Q  1 cttgtgtttctctctctttcacaagcattgtgacactgtga 41  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  14229434 cttgtgtttctctctctttcacaagcattgtgacattgtga 14229394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 16514481 - 16514521
Alignment:
Q  1 cttgtgtttctctctctttcacaagcattgtgacactgtga 41  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  16514481 cttgtgtttctctctctttcacaagcattgtgacattgtga 16514521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 38933644 - 38933678
Alignment:
Q  1 cttgtgtttctctctctttcacaagcattgtgaca 35  Q
    |||||||||||||||||||||||||||||||||||    
T  38933644 cttgtgtttctctctctttcacaagcattgtgaca 38933678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 2828641 - 2828681
Alignment:
Q  1 cttgtgtttctctctctttcacaagcattgtgacactgtga 41  Q
    ||||||||||||||||||||| ||||||||||||| |||||    
T  2828641 cttgtgtttctctctctttcagaagcattgtgacattgtga 2828681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 6722008 - 6722048
Alignment:
Q  1 cttgtgtttctctctctttcacaagcattgtgacactgtga 41  Q
    |||||||||||||||||||||||| |||||||||| |||||    
T  6722008 cttgtgtttctctctctttcacaaacattgtgacattgtga 6722048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 14464622 - 14464567
Alignment:
Q  15 tctttcacaagcattgtgacactgtgaattaaccaatgttactcaactctatgtcac 71  Q
    ||||||||||| ||||||||| ||||| || |||||||| |||||||||||||||||    
T  14464622 tctttcacaagtattgtgacattgtga-ttgaccaatgtcactcaactctatgtcac 14464567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 6217304 - 6217265
Alignment:
Q  2 ttgtgtttctctctctttcacaagcattgtgacactgtga 41  Q
    ||||||||||||||||||||||||||||||| || |||||    
T  6217304 ttgtgtttctctctctttcacaagcattgtggcattgtga 6217265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 29508772 - 29508741
Alignment:
Q  1 cttgtgtttctctctctttcacaagcattgtg 32  Q
    ||||||||||||||||||||||||||||||||    
T  29508772 cttgtgtttctctctctttcacaagcattgtg 29508741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 29925650 - 29925611
Alignment:
Q  2 ttgtgtttctctctctttcacaagcattgtgacactgtga 41  Q
    |||||||||||||||||||||||||||| ||||| |||||    
T  29925650 ttgtgtttctctctctttcacaagcattctgacattgtga 29925611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 37762082 - 37762012
Alignment:
Q  1 cttgtgtttctctctctttcacaagcattgtgacactgtgaattaaccaatgttactcaactctatgtcacc 72  Q
    ||||||||||| |||||||||||||||||| |||| |||| |||   |||||| ||||||||||| ||||||    
T  37762082 cttgtgtttctttctctttcacaagcattgcgacattgtg-attggtcaatgtcactcaactctacgtcacc 37762012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 37961764 - 37961803
Alignment:
Q  2 ttgtgtttctctctctttcacaagcattgtgacactgtga 41  Q
    ||||||||||||||||||||||||||||||| || |||||    
T  37961764 ttgtgtttctctctctttcacaagcattgtggcattgtga 37961803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 14470672 - 14470644
Alignment:
Q  2 ttgtgtttctctctctttcacaagcattg 30  Q
    |||||||||||||||||||||||||||||    
T  14470672 ttgtgtttctctctctttcacaagcattg 14470644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 55090077 - 55090001
Alignment:
Q  1 cttgtgtttctctctctttcacaagcattgtgacactgtgaattaaccaatgttactcaactctatgtcacctaagtg 78  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||| |||||||| |||||||||||||||||| |||||    
T  55090077 cttgtgtctctctctctttcacaagcattgtgacattgtg-attgaccaatgtcactcaactctatgtcacccaagtg 55090001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 47404666 - 47404590
Alignment:
Q  1 cttgtgtttctctctctttcacaagcattgtgacactgtgaattaaccaatgttactcaactctatgtcacctaagtg 78  Q
    |||| |||||||||||||||||||||||||||||| |||| ||| |||||||| || ||||||||||||||| |||||    
T  47404666 cttgggtttctctctctttcacaagcattgtgacattgtg-attgaccaatgtcacccaactctatgtcacccaagtg 47404590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 50384186 - 50384110
Alignment:
Q  1 cttgtgtttctctctctttcacaagcattgtgacactgtgaattaaccaatgttactcaactctatgtcacctaagtg 78  Q
    ||||||||||||||||||||||||||||||||||| |||| |||  ||||||| || ||||||||||||||| |||||    
T  50384186 cttgtgtttctctctctttcacaagcattgtgacattgtg-attggccaatgtcacccaactctatgtcacccaagtg 50384110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 6271759 - 6271799
Alignment:
Q  1 cttgtgtttctctctctttcacaagcattgtgacactgtga 41  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  6271759 cttgtgtttctctctctttcacaagcattgtgacattgtga 6271799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 23444350 - 23444310
Alignment:
Q  1 cttgtgtttctctctctttcacaagcattgtgacactgtga 41  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  23444350 cttgtgtttctctctctttcacaagcattgtgacattgtga 23444310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 78
Target Start/End: Complemental strand, 31430541 - 31430466
Alignment:
Q  2 ttgtgtttctctctctttcacaagcattgtgacactgtgaattaaccaatgttactcaactctatgtcacctaagtg 78  Q
    |||||||||||||||||||| ||||||||||||| |||| |||   |||||| || ||||||||||||||| |||||    
T  31430541 ttgtgtttctctctctttcataagcattgtgacattgtg-attggtcaatgtcacccaactctatgtcacccaagtg 31430466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 78
Target Start/End: Original strand, 40789237 - 40789312
Alignment:
Q  2 ttgtgtttctctctctttcacaagcattgtgacactgtgaattaaccaatgttactcaactctatgtcacctaagtg 78  Q
    |||||||||||||||||||||||||||||||||| |||| |||  ||||| | ||  |||||||||||||| |||||    
T  40789237 ttgtgtttctctctctttcacaagcattgtgacattgtg-attggccaatatcaccaaactctatgtcacccaagtg 40789312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 42375067 - 42375107
Alignment:
Q  1 cttgtgtttctctctctttcacaagcattgtgacactgtga 41  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  42375067 cttgtgtttctctctctttcacaagcattgtgacattgtga 42375107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 47661899 - 47661939
Alignment:
Q  1 cttgtgtttctctctctttcacaagcattgtgacactgtga 41  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  47661899 cttgtgtttctctctctttcacaagcattgtgacattgtga 47661939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 52028607 - 52028646
Alignment:
Q  2 ttgtgtttctctctctttcacaagcattgtgacactgtga 41  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  52028607 ttgtgtttctctctctttcacaagcattgtgacattgtga 52028646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 51265502 - 51265536
Alignment:
Q  1 cttgtgtttctctctctttcacaagcattgtgaca 35  Q
    |||||||||||||||||||||||||||||||||||    
T  51265502 cttgtgtttctctctctttcacaagcattgtgaca 51265536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 55090072 - 55090129
Alignment:
Q  20 cacaagcattgtgacactgtgaattaaccaatgttactcaactctatgtcacctaagtg 78  Q
    |||||||||||||||| ||||| || |||||||| |||||||||||||||||| |||||    
T  55090072 cacaagcattgtgacattgtga-ttgaccaatgtcactcaactctatgtcacccaagtg 55090129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 78
Target Start/End: Complemental strand, 24006147 - 24006075
Alignment:
Q  5 tgtttctctctctttcacaagcattgtgacactgtgaattaaccaatgttactcaactctatgtcacctaagtg 78  Q
    |||||||||||||||||||||||||||| || |||| |||  ||||||| || ||||| ||||||||| |||||    
T  24006147 tgtttctctctctttcacaagcattgtgtcattgtg-attggccaatgtcacccaactgtatgtcacccaagtg 24006075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 35
Target Start/End: Complemental strand, 45591490 - 45591457
Alignment:
Q  2 ttgtgtttctctctctttcacaagcattgtgaca 35  Q
    ||||||||||||||||||||||||||||||||||    
T  45591490 ttgtgtttctctctctttcacaagcattgtgaca 45591457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 30861855 - 30861823
Alignment:
Q  1 cttgtgtttctctctctttcacaagcattgtga 33  Q
    |||||||||||||||||||||||||||||||||    
T  30861855 cttgtgtttctctctctttcacaagcattgtga 30861823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 35682223 - 35682263
Alignment:
Q  1 cttgtgtttctctctctttcacaagcattgtgacactgtga 41  Q
    ||||||||||||| ||||||||||||||||||||| |||||    
T  35682223 cttgtgtttctctatctttcacaagcattgtgacattgtga 35682263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 25818453 - 25818414
Alignment:
Q  2 ttgtgtttctctctctttcacaagcattgtgacactgtga 41  Q
    ||||||||||||||||||||||| |||||||||| |||||    
T  25818453 ttgtgtttctctctctttcacaatcattgtgacattgtga 25818414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 75
Target Start/End: Complemental strand, 55089935 - 55089885
Alignment:
Q  24 agcattgtgacactgtgaattaaccaatgttactcaactctatgtcacctaa 75  Q
    |||||||||||| ||||| || |||||||| |||||||||||||||||||||    
T  55089935 agcattgtgacattgtga-ttgaccaatgtcactcaactctatgtcacctaa 55089885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 35
Target Start/End: Original strand, 47762669 - 47762699
Alignment:
Q  5 tgtttctctctctttcacaagcattgtgaca 35  Q
    |||||||||||||||||||||||||||||||    
T  47762669 tgtttctctctctttcacaagcattgtgaca 47762699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 157
Target Start/End: Original strand, 9542580 - 9542612
Alignment:
Q  125 aaagtaacatataatttgggacggaaggagtag 157  Q
    ||||| |||||||||||||||||||||||||||    
T  9542580 aaagtgacatataatttgggacggaaggagtag 9542612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 8243469 - 8243393
Alignment:
Q  1 cttgtgtttctctctctttcacaagcattgtgacactgtgaattaaccaatgttactcaactctatgtcacctaagtg 78  Q
    |||||||||||||||||||||||||||||||| || |||| ||| | |||||| |||||||||||||||||| |||||    
T  8243469 cttgtgtttctctctctttcacaagcattgtggcattgtg-attgatcaatgtcactcaactctatgtcacccaagtg 8243393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 34229698 - 34229767
Alignment:
Q  1 cttgtgtttctctctctttcacaagcattgtgacactgtgaattaaccaatgttactcaactctatgtcac 71  Q
    ||||||||||||||||||||||||||||||||| | |||| ||| |||||||| ||  |||||||||||||    
T  34229698 cttgtgtttctctctctttcacaagcattgtgatattgtg-attgaccaatgtcacctaactctatgtcac 34229767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 5033218 - 5033258
Alignment:
Q  1 cttgtgtttctctctctttcacaagcattgtgacactgtga 41  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  5033218 cttgtgtttctctctctttcacaagcattgtgacattgtga 5033258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 33841672 - 33841632
Alignment:
Q  1 cttgtgtttctctctctttcacaagcattgtgacactgtga 41  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  33841672 cttgtgtttctctctctttcacaagcattgtgacaatgtga 33841632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 35441050 - 35441010
Alignment:
Q  1 cttgtgtttctctctctttcacaagcattgtgacactgtga 41  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  35441050 cttgtgtttctctctctttcacaagcattgtgacattgtga 35441010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 34541884 - 34541808
Alignment:
Q  1 cttgtgtttctctctctttcacaagcattgtgacactgtgaattaaccaatgttactcaactctatgtcacctaagtg 78  Q
    ||||||||||||||||||||||||||||||||| | | || |||  ||||||| || ||||| ||||||||| |||||    
T  34541884 cttgtgtttctctctctttcacaagcattgtgatattatg-attggccaatgtcacccaactttatgtcacccaagtg 34541808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 10086815 - 10086854
Alignment:
Q  2 ttgtgtttctctctctttcacaagcattgtgacactgtga 41  Q
    ||||||||||||||||||||||| |||||||||| |||||    
T  10086815 ttgtgtttctctctctttcacaaacattgtgacattgtga 10086854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 6296662 - 6296696
Alignment:
Q  1 cttgtgtttctctctctttcacaagcattgtgaca 35  Q
    ||||||||||||||||||||||||| |||||||||    
T  6296662 cttgtgtttctctctctttcacaagtattgtgaca 6296696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 8796479 - 8796513
Alignment:
Q  1 cttgtgtttctctctctttcacaagcattgtgaca 35  Q
    ||||||||||||| |||||||||||||||||||||    
T  8796479 cttgtgtttctctatctttcacaagcattgtgaca 8796513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 35
Target Start/End: Original strand, 31159912 - 31159942
Alignment:
Q  5 tgtttctctctctttcacaagcattgtgaca 35  Q
    |||||||||||||||||||||||||||||||    
T  31159912 tgtttctctctctttcacaagcattgtgaca 31159942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 34
Target Start/End: Original strand, 4958657 - 4958689
Alignment:
Q  2 ttgtgtttctctctctttcacaagcattgtgac 34  Q
    |||||||||||||||||||||||| ||||||||    
T  4958657 ttgtgtttctctctctttcacaagtattgtgac 4958689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 71
Target Start/End: Original strand, 4609054 - 4609122
Alignment:
Q  2 ttgtgtttctctctctttcacaagcattgtgacactgtgaattaaccaatgttactcaactctatgtcac 71  Q
    |||||||||||||||||||||||||||||||||| |||| ||| |||||||| || ||||||||||||||    
T  4609054 ttgtgtttctctctctttcacaagcattgtgacattgtg-attgaccaatgtcacccaactctatgtcac 4609122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 1819570 - 1819502
Alignment:
Q  1 cttgtgtttctctctctttcacaagcattgtgacactgtgaattaaccaatgttactcaactctatgtca 70  Q
    ||||||||||||||||||||||||||||||||||| |||| ||| | |||||| || |||||||||||||    
T  1819570 cttgtgtttctctctctttcacaagcattgtgacattgtg-attgatcaatgtcacccaactctatgtca 1819502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 78
Target Start/End: Complemental strand, 8337931 - 8337857
Alignment:
Q  2 ttgtgtttctctctctttcacaagcattgtgacactgtgaattaaccaatgttactcaactctatgtcacctaagtg 78  Q
    ||||||||||||||||||||||| |||||||||| |||| ||| |||||||| || ||||||||| |||||||||||    
T  8337931 ttgtgtttctctctctttcacaaacattgtgacattgtg-attgaccaatgtcac-caactctatatcacctaagtg 8337857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 46334027 - 46333951
Alignment:
Q  1 cttgtgtttctctctctttcacaagcattgtgacactgtgaattaaccaatgttactcaactctatgtcacctaagtg 78  Q
    ||||||||| ||||||||||||||||||||||||| |||| |||  ||||||| |  ||||||||||||||| |||||    
T  46334027 cttgtgtttttctctctttcacaagcattgtgacattgtg-attggccaatgtcatccaactctatgtcacccaagtg 46333951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 71
Target Start/End: Original strand, 47303453 - 47303521
Alignment:
Q  2 ttgtgtttctctctctttcacaagcattgtgacactgtgaattaaccaatgttactcaactctatgtcac 71  Q
    ||||||||||||||||||||||| |||||||||| |||| ||| |||||||| ||  |||||||||||||    
T  47303453 ttgtgtttctctctctttcacaaacattgtgacattgtg-attgaccaatgtcacctaactctatgtcac 47303521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 741583 - 741543
Alignment:
Q  1 cttgtgtttctctctctttcacaagcattgtgacactgtga 41  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  741583 cttgtgtttctctctctttcacaagcattgtgacattgtga 741543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 17127645 - 17127605
Alignment:
Q  1 cttgtgtttctctctctttcacaagcattgtgacactgtga 41  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  17127645 cttgtgtttctctctctttcacaagcattgtgacattgtga 17127605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 78
Target Start/End: Complemental strand, 28928859 - 28928784
Alignment:
Q  2 ttgtgtttctctctctttcacaagcattgtgacactgtgaattaaccaatgttactcaactctatgtcacctaagtg 78  Q
    |||||||||||||||||||||||||| ||||||| |||| |||  ||||||| ||  |||||||||||||| |||||    
T  28928859 ttgtgtttctctctctttcacaagcactgtgacattgtg-attggccaatgtcaccaaactctatgtcacccaagtg 28928784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 29179678 - 29179638
Alignment:
Q  1 cttgtgtttctctctctttcacaagcattgtgacactgtga 41  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  29179678 cttgtgtttctctctctttcacaagcattgtgacattgtga 29179638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 32540829 - 32540789
Alignment:
Q  1 cttgtgtttctctctctttcacaagcattgtgacactgtga 41  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  32540829 cttgtgtttctctctctttcacaagcattgtgacattgtga 32540789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 37155103 - 37155182
Alignment:
Q  1 cttgtgtttctctctctttcacaagcattgtgacactgtgaattaaccaatgttactcaactcta-tgtcacctaagtgta 80  Q
    ||||||||||||||||||||||||| ||||||||| |||| |||  ||||||| || |||||||| ||||||| |||||||    
T  37155103 cttgtgtttctctctctttcacaagtattgtgacattgtg-attggccaatgtcacccaactctattgtcacccaagtgta 37155182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 48993998 - 48993958
Alignment:
Q  1 cttgtgtttctctctctttcacaagcattgtgacactgtga 41  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  48993998 cttgtgtttctctctctttcacaagcattgtgacattgtga 48993958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 1091624 - 1091585
Alignment:
Q  2 ttgtgtttctctctctttcacaagcattgtgacactgtga 41  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  1091624 ttgtgtttctctctctttcacaagcattgtgacattgtga 1091585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 29371426 - 29371465
Alignment:
Q  2 ttgtgtttctctctctttcacaagcattgtgacactgtga 41  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  29371426 ttgtgtttctctctctttcacaagcattgtgacattgtga 29371465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 5995426 - 5995466
Alignment:
Q  1 cttgtgtttctctctctttcacaagcattgtgacactgtga 41  Q
    |||||||||||||||||||||||||||||||| || |||||    
T  5995426 cttgtgtttctctctctttcacaagcattgtggcattgtga 5995466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 15220868 - 15220900
Alignment:
Q  1 cttgtgtttctctctctttcacaagcattgtga 33  Q
    |||||||||||||||||||||||||||||||||    
T  15220868 cttgtgtttctctctctttcacaagcattgtga 15220900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 45728344 - 45728384
Alignment:
Q  1 cttgtgtttctctctctttcacaagcattgtgacactgtga 41  Q
    ||||||||||||||||||||||||||||| ||||| |||||    
T  45728344 cttgtgtttctctctctttcacaagcattatgacattgtga 45728384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 33
Target Start/End: Complemental strand, 36290487 - 36290456
Alignment:
Q  2 ttgtgtttctctctctttcacaagcattgtga 33  Q
    ||||||||||||||||||||||||||||||||    
T  36290487 ttgtgtttctctctctttcacaagcattgtga 36290456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 44706865 - 44706834
Alignment:
Q  1 cttgtgtttctctctctttcacaagcattgtg 32  Q
    ||||||||||||||||||||||||||||||||    
T  44706865 cttgtgtttctctctctttcacaagcattgtg 44706834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 9157367 - 9157436
Alignment:
Q  1 cttgtgtttctctctctttcacaagcattgtgacactgtgaattaaccaatgttactcaactctatgtcac 71  Q
    |||||||||||||||||||| |||||||||||| | |||| ||| | |||||| |  ||||||||||||||    
T  9157367 cttgtgtttctctctctttctcaagcattgtgatattgtg-attgatcaatgtcaaccaactctatgtcac 9157436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 123 - 156
Target Start/End: Original strand, 32162459 - 32162492
Alignment:
Q  123 ctaaagtaacatataatttgggacggaaggagta 156  Q
    ||||||||||||| ||||||||||||||||||||    
T  32162459 ctaaagtaacatacaatttgggacggaaggagta 32162492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 33219630 - 33219670
Alignment:
Q  1 cttgtgtttctctctctttcacaagcattgtgacactgtga 41  Q
    ||||||||| ||||||||||||||||||| ||||| |||||    
T  33219630 cttgtgtttttctctctttcacaagcattatgacattgtga 33219670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 34062270 - 34062306
Alignment:
Q  5 tgtttctctctctttcacaagcattgtgacactgtga 41  Q
    |||||||||||||||||||| |||||||||| |||||    
T  34062270 tgtttctctctctttcacaaacattgtgacattgtga 34062306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 87
Target Start/End: Complemental strand, 38674576 - 38674501
Alignment:
Q  11 tctctctttcacaagcattgtgacactgtgaattaaccaatgttactcaactctatgtcacctaagtgtattccatt 87  Q
    ||||||||||||||||||||||||| |||| |||  ||||| | || |||||| |||||||| |||| | |||||||    
T  38674576 tctctctttcacaagcattgtgacattgtg-attggccaatatcacccaactccatgtcacccaagtattttccatt 38674501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 78
Target Start/End: Original strand, 48498473 - 48498547
Alignment:
Q  2 ttgtgtttctctctctttcacaagcattgtgacactgtgaattaaccaatgttactcaactctatgtcacctaagtg 78  Q
    ||||||||||||||||||||||||||| || ||| ||||| ||   |||||| || ||||||||||||||| |||||    
T  48498473 ttgtgtttctctctctttcacaagcatggtaacattgtga-ttggtcaatgtcac-caactctatgtcacccaagtg 48498547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 78
Target Start/End: Complemental strand, 27028873 - 27028798
Alignment:
Q  2 ttgtgtttctctctctttcacaagcattgtgacactgtgaattaaccaatgttactcaactctatgtcacctaagtg 78  Q
    |||||||||||||||||||| ||||||||||||| |||| |||  |||||||||| ||||||||||||||| |||||    
T  27028873 ttgtgtttctctctctttcagaagcattgtgacattgtg-attgtccaatgttacccaactctatgtcacccaagtg 27028798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 15027600 - 15027639
Alignment:
Q  2 ttgtgtttctctctctttcacaagcattgtgacactgtga 41  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  15027600 ttgtgtttctctctctttcacaagcattgtgacattgtga 15027639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 79
Target Start/End: Complemental strand, 34854775 - 34854699
Alignment:
Q  2 ttgtgtttctctctctttcacaagcattgtgacactgtgaattaaccaatgttactcaactctatgtcacctaagtgt 79  Q
    |||||||||| |||||||||||||||||||| || |||| |||  ||||||| ||  |||||||||||||| ||||||    
T  34854775 ttgtgtttctatctctttcacaagcattgtggcattgtg-attggccaatgtcaccaaactctatgtcacccaagtgt 34854699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 41018305 - 41018241
Alignment:
Q  5 tgtttctctctctttcacaagcattgtgacactgtgaattaaccaatgttactcaactctatgtca 70  Q
    |||||||||||||||||||||||||| |||| |||| |||  ||||||| || |||||||||||||    
T  41018305 tgtttctctctctttcacaagcattgggacattgtg-attggccaatgtcacccaactctatgtca 41018241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 11016926 - 11016966
Alignment:
Q  1 cttgtgtttctctctctttcacaagcattgtgacactgtga 41  Q
    |||||||||||||||||||||||| |||||||||| |||||    
T  11016926 cttgtgtttctctctctttcacaaacattgtgacattgtga 11016966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 7671991 - 7671952
Alignment:
Q  2 ttgtgtttctctctctttcacaagcattgtgacactgtga 41  Q
    ||||||||||||||||||||||||||||||| || |||||    
T  7671991 ttgtgtttctctctctttcacaagcattgtggcattgtga 7671952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 38975862 - 38975893
Alignment:
Q  1 cttgtgtttctctctctttcacaagcattgtg 32  Q
    ||||||||||||||||||||||||||||||||    
T  38975862 cttgtgtttctctctctttcacaagcattgtg 38975893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 71
Target Start/End: Original strand, 4649387 - 4649448
Alignment:
Q  9 tctctctctttcacaagcattgtgacactgtgaattaaccaatgttactcaactctatgtcac 71  Q
    |||||||||||||||||||| |||||| |||| ||| |||||||| ||  |||||||||||||    
T  4649387 tctctctctttcacaagcatcgtgacattgtg-attgaccaatgtcaccaaactctatgtcac 4649448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 10419515 - 10419592
Alignment:
Q  1 cttgtgtttctctctctttcacaagcattgtgacactgtgaattaaccaatgttactcaactctatgtcacctaagtgt 79  Q
    |||||||||||||||||||||||||  |||||||| |||| || | ||||||| ||  |||||||||| ||| ||||||    
T  10419515 cttgtgtttctctctctttcacaagttttgtgacattgtg-atcagccaatgtcaccaaactctatgttacccaagtgt 10419592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 29053394 - 29053325
Alignment:
Q  2 ttgtgtttctctctctttcacaagcattgtgacactgtgaattaaccaatgttactcaactctatgtcacc 72  Q
    ||||||||||||||||||||||||||||| | || |||| |||  ||||||| ||  ||||||||||||||    
T  29053394 ttgtgtttctctctctttcacaagcattgaggcattgtg-attggccaatgtcaccaaactctatgtcacc 29053325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 41
Target Start/End: Original strand, 4290605 - 4290642
Alignment:
Q  4 gtgtttctctctctttcacaagcattgtgacactgtga 41  Q
    |||||||||||||||||||||| ||||||||| |||||    
T  4290605 gtgtttctctctctttcacaagaattgtgacattgtga 4290642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 42628356 - 42628392
Alignment:
Q  5 tgtttctctctctttcacaagcattgtgacactgtga 41  Q
    |||||||||||||||||||||||||| |||| |||||    
T  42628356 tgtttctctctctttcacaagcattgggacattgtga 42628392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 16439195 - 16439264
Alignment:
Q  1 cttgtgtttctctctctttcacaagcattgtgacactgtgaattaaccaatgttactcaactctatgtcac 71  Q
    ||||||||||||||||||||||||||||||||||| |||| ||| | |||||| || ||||||||||||||    
T  16439195 cttgtgtttctctctctttcacaagcattgtgacattgtg-attgatcaatgtcacccaactctatgtcac 16439264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 2953247 - 2953287
Alignment:
Q  1 cttgtgtttctctctctttcacaagcattgtgacactgtga 41  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  2953247 cttgtgtttctctctctttcacaagcattgtgacattgtga 2953287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 3899896 - 3899936
Alignment:
Q  1 cttgtgtttctctctctttcacaagcattgtgacactgtga 41  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  3899896 cttgtgtttctctctctttcacaagcattgtgacattgtga 3899936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 16971201 - 16971241
Alignment:
Q  1 cttgtgtttctctctctttcacaagcattgtgacactgtga 41  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  16971201 cttgtgtttctctctctttcacaagcattgtgacattgtga 16971241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 79
Target Start/End: Original strand, 19655216 - 19655301
Alignment:
Q  2 ttgtgtttctctctctttcacaagcattgtgacactgtgaat--------taaccaatgttactcaactctatgtcacctaagtgt 79  Q
    |||||||||||||||||||||||||||||||||| ||||| |        | |||||||| |||||||||||||||||| ||||||    
T  19655216 ttgtgtttctctctctttcacaagcattgtgacattgtgattggacaatgtcaccaatgtcactcaactctatgtcacccaagtgt 19655301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 29699424 - 29699464
Alignment:
Q  1 cttgtgtttctctctctttcacaagcattgtgacactgtga 41  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  29699424 cttgtgtttctctctctttcacaagcattgtgacattgtga 29699464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 3180141 - 3180072
Alignment:
Q  1 cttgtgtttctctctctttcacaagcattgtgacactgtgaattaaccaatgttactcaactctatgtcac 71  Q
    |||||||||||||||||||||||| |||||||||| | || ||| | |||||| || ||||||||||||||    
T  3180141 cttgtgtttctctctctttcacaaacattgtgacattatg-attgatcaatgtcacccaactctatgtcac 3180072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 2094018 - 2093978
Alignment:
Q  1 cttgtgtttctctctctttcacaagcattgtgacactgtga 41  Q
    ||||||||||||||||||||||||||||| ||||| |||||    
T  2094018 cttgtgtttctctctctttcacaagcattatgacattgtga 2093978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 78
Target Start/End: Original strand, 16802502 - 16802577
Alignment:
Q  2 ttgtgtttctctctctttcacaagcattgtgacactgtgaattaaccaatgttactcaactctatgtcacctaagtg 78  Q
    |||||||||||||||||| ||||||||||||||| | || |||   |||||| |||||||||||| |||| ||||||    
T  16802502 ttgtgtttctctctcttttacaagcattgtgacattctg-attggtcaatgtcactcaactctatatcacttaagtg 16802577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 26662456 - 26662508
Alignment:
Q  1 cttgtgtttctctctctttcacaagcattgtgacactgtgaattaaccaatgt 53  Q
    ||||||||||||||| ||||||||| ||||||||| ||||| || ||||||||    
T  26662456 cttgtgtttctctctttttcacaagtattgtgacattgtgatttgaccaatgt 26662508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 26934051 - 26934103
Alignment:
Q  1 cttgtgtttctctctctttcacaagcattgtgacactgtgaattaaccaatgt 53  Q
    ||||||||||||||| ||||||||| ||||||||| ||||| || ||||||||    
T  26934051 cttgtgtttctctctttttcacaagtattgtgacattgtgatttgaccaatgt 26934103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 28818974 - 28819008
Alignment:
Q  1 cttgtgtttctctctctttcacaagcattgtgaca 35  Q
    ||||| |||||||||||||||||||||||||||||    
T  28818974 cttgtatttctctctctttcacaagcattgtgaca 28819008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 12913860 - 12913900
Alignment:
Q  1 cttgtgtttctctctctttcacaagcattgtgacactgtga 41  Q
    ||||||| ||||||||||||||||||||| ||||| |||||    
T  12913860 cttgtgtatctctctctttcacaagcattatgacattgtga 12913900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 19598389 - 19598417
Alignment:
Q  1 cttgtgtttctctctctttcacaagcatt 29  Q
    |||||||||||||||||||||||||||||    
T  19598389 cttgtgtttctctctctttcacaagcatt 19598417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 38134454 - 38134414
Alignment:
Q  1 cttgtgtttctctctctttcacaagcattgtgacactgtga 41  Q
    ||||||||||| |||||||||| |||||||||||| |||||    
T  38134454 cttgtgtttctttctctttcactagcattgtgacattgtga 38134414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 33689233 - 33689309
Alignment:
Q  1 cttgtgtttctctctctttcacaagcattgtgacactgtgaattaaccaatgttactcaactctatgtcacctaagtg 78  Q
    ||||||||||||||||||||||||||||||||||| |||| |||  ||||||| || |||||| |||||||| |||||    
T  33689233 cttgtgtttctctctctttcacaagcattgtgacattgtg-attggccaatgtcacccaactcaatgtcacccaagtg 33689309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 43139790 - 43139721
Alignment:
Q  1 cttgtgtttctctctctttcacaagcattgtgacactgtgaattaaccaatgttactcaactctatgtcac 71  Q
    ||||||||||||||||||||||||||||| ||||| |||| ||| ||| |||| || ||||||||||||||    
T  43139790 cttgtgtttctctctctttcacaagcattctgacattgtg-attgaccgatgtcacccaactctatgtcac 43139721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 78
Target Start/End: Original strand, 55223293 - 55223365
Alignment:
Q  5 tgtttctctctctttcacaagcattgtgacactgtgaattaaccaatgttactcaactctatgtcacctaagtg 78  Q
    ||||||||||||||||||||||||||||||| | || ||| |||||| | ||| |||||||||||||| |||||    
T  55223293 tgtttctctctctttcacaagcattgtgacattatg-attgaccaatatcacttaactctatgtcacccaagtg 55223365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 70
Target Start/End: Complemental strand, 29031794 - 29031727
Alignment:
Q  2 ttgtgtttctctctctttcacaagcattgtgacactgtgaattaaccaatgttactcaactctatgtca 70  Q
    |||||||||||||||||||||||||||||||||| |||| ||| |||||| | ||  ||||||||||||    
T  29031794 ttgtgtttctctctctttcacaagcattgtgacattgtg-attgaccaatatcacctaactctatgtca 29031727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 30476555 - 30476515
Alignment:
Q  1 cttgtgtttctctctctttcacaagcattgtgacactgtga 41  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  30476555 cttgtgtttctctctctttcacaagcattgtgacattgtga 30476515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 47677335 - 47677296
Alignment:
Q  2 ttgtgtttctctctctttcacaagcattgtgacactgtga 41  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  47677335 ttgtgtttctctctctttcacaagcattgtgacattgtga 47677296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 49418772 - 49418696
Alignment:
Q  1 cttgtgtttctctctctttcacaagcattgtgacactgtgaattaaccaatgttactcaactctatgtcacctaagtg 78  Q
    ||||||||||||||||||||||||  ||| ||||| |||| ||| |||||| | || ||||||||||||||| |||||    
T  49418772 cttgtgtttctctctctttcacaaatattatgacattgtg-attgaccaatatcacccaactctatgtcacccaagtg 49418696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 30734483 - 30734443
Alignment:
Q  1 cttgtgtttctctctctttcacaagcattgtgacactgtga 41  Q
    ||||||||||||| ||||||||||||||||||||| |||||    
T  30734483 cttgtgtttctctatctttcacaagcattgtgacattgtga 30734443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 47492128 - 47492088
Alignment:
Q  1 cttgtgtttctctctctttcacaagcattgtgacactgtga 41  Q
    ||||||||||||||| ||||||||||||||||||| |||||    
T  47492128 cttgtgtttctctctttttcacaagcattgtgacattgtga 47492088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 1801526 - 1801487
Alignment:
Q  2 ttgtgtttctctctctttcacaagcattgtgacactgtga 41  Q
    ||||||||||||||||||||||||||||||| || |||||    
T  1801526 ttgtgtttctctctctttcacaagcattgtggcattgtga 1801487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 51046154 - 51046120
Alignment:
Q  1 cttgtgtttctctctctttcacaagcattgtgaca 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  51046154 cttgtgtttctctctctttcacaaacattgtgaca 51046120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 79
Target Start/End: Original strand, 18321709 - 18321785
Alignment:
Q  2 ttgtgtttctctctctttcacaagcattgtgacactgtgaattaaccaatgttactcaactctatgtcacctaagtgt 79  Q
    |||||||| ||||| ||||||| ||||||||||| |||| ||| |||||||| |  ||||||||||||| | ||||||    
T  18321709 ttgtgtttttctctttttcacatgcattgtgacattgtg-attgaccaatgtcatccaactctatgtcatccaagtgt 18321785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 159
Target Start/End: Original strand, 54747956 - 54747992
Alignment:
Q  123 ctaaagtaacatataatttgggacggaaggagtagta 159  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  54747956 ctaaagtgacatacaatttgggacggaaggagtagta 54747992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 63815 - 63884
Alignment:
Q  2 ttgtgtttctctctctttcacaagcattgtgacactgtgaattaaccaatgttactcaactctatgtcacc 72  Q
    |||||||||||||||||||||||||||||||||| |||| |||  ||||||| || ||||||||| |||||    
T  63815 ttgtgtttctctctctttcacaagcattgtgacattgtg-attggccaatgtcacccaactctatatcacc 63884  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 551246 - 551169
Alignment:
Q  1 cttgtgtttctctctctttcacaagcattgtgacactgtgaattaaccaatgttactcaactctatgtcacctaagtgt 79  Q
    |||||||||||||||||||||||| ||||||| || |||| ||| |||||||| || |||||||||| |||| ||||||    
T  551246 cttgtgtttctctctctttcacaaacattgtggcattgtg-attgaccaatgtcacccaactctatgccacccaagtgt 551169  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 10521930 - 10521854
Alignment:
Q  1 cttgtgtttctctctctttcacaagcattgtgacactgtgaattaaccaatgttactcaactctatgtcacctaagtg 78  Q
    ||||||||||||||||||||| ||||||||||||| |||| |||  ||||||| ||  |||||||||||||| |||||    
T  10521930 cttgtgtttctctctctttcataagcattgtgacattgtg-attggccaatgtcaccaaactctatgtcacccaagtg 10521854  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 12343157 - 12343197
Alignment:
Q  1 cttgtgtttctctctctttcacaagcattgtgacactgtga 41  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  12343157 cttgtgtttctctctctttcacaagcattgtgacattgtga 12343197  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 13043514 - 13043546
Alignment:
Q  1 cttgtgtttctctctctttcacaagcattgtga 33  Q
    |||||||||||||||||||||||||||||||||    
T  13043514 cttgtgtttctctctctttcacaagcattgtga 13043546  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 24587518 - 24587559
Alignment:
Q  1 cttgtgtttctctctctttcacaagcattgtgacactgtgaa 42  Q
    |||||||||||| || ||||||||||||||||||| ||||||    
T  24587518 cttgtgtttctcgctttttcacaagcattgtgacattgtgaa 24587559  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 10521925 - 10521976
Alignment:
Q  20 cacaagcattgtgacactgtgaattaaccaatgttactcaactctatgtcacc 72  Q
    |||||||||| ||||| ||||| || |||||||| ||||||||||||||||||    
T  10521925 cacaagcattatgacattgtga-ttgaccaatgtcactcaactctatgtcacc 10521976  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 159
Target Start/End: Complemental strand, 11615385 - 11615349
Alignment:
Q  123 ctaaagtaacatataatttgggacggaaggagtagta 159  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  11615385 ctaaagtgacatataatttgggacggagggagtagta 11615349  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 24618682 - 24618642
Alignment:
Q  1 cttgtgtttctctctctttcacaagcattgtgacactgtga 41  Q
    ||||||||||||||||||||| ||||||| ||||| |||||    
T  24618682 cttgtgtttctctctctttcataagcattatgacattgtga 24618642  T

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Target: scaffold1033 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold1033
Description:

Target: scaffold1033; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 2270 - 2310
Alignment:
Q  1 cttgtgtttctctctctttcacaagcattgtgacactgtga 41  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  2270 cttgtgtttctctctctttcacaagcattgtgacattgtga 2310  T

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Target: scaffold1029 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold1029
Description:

Target: scaffold1029; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 2270 - 2310
Alignment:
Q  1 cttgtgtttctctctctttcacaagcattgtgacactgtga 41  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  2270 cttgtgtttctctctctttcacaagcattgtgacattgtga 2310  T

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Target: scaffold0586 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 7128 - 7088
Alignment:
Q  1 cttgtgtttctctctctttcacaagcattgtgacactgtga 41  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  7128 cttgtgtttctctctctttcacaagcattgtgacattgtga 7088  T

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Target: scaffold0016 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 49784 - 49744
Alignment:
Q  1 cttgtgtttctctctctttcacaagcattgtgacactgtga 41  Q
    ||||||||||||| ||||||||||||||||||||| |||||    
T  49784 cttgtgtttctctttctttcacaagcattgtgacattgtga 49744  T

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Target: scaffold0481 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 2967 - 2928
Alignment:
Q  2 ttgtgtttctctctctttcacaagcattgtgacactgtga 41  Q
    ||||||||||||||||||||||| |||||||||| |||||    
T  2967 ttgtgtttctctctctttcacaaacattgtgacattgtga 2928  T

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