View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7748_low_10 (Length: 240)

Name: NF7748_low_10
Description: NF7748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7748_low_10
NF7748_low_10
[»] chr8 (3 HSPs)
chr8 (26-137)||(2766866-2766977)
chr8 (53-137)||(5913119-5913203)
chr8 (53-125)||(9039665-9039737)
[»] chr1 (2 HSPs)
chr1 (64-137)||(1671329-1671402)
chr1 (64-137)||(30858507-30858580)
[»] chr3 (1 HSPs)
chr3 (51-137)||(49303206-49303292)
[»] chr4 (4 HSPs)
chr4 (32-129)||(47020044-47020141)
chr4 (89-137)||(9242923-9242971)
chr4 (85-137)||(38131469-38131521)
chr4 (53-137)||(42118974-42119058)
[»] chr7 (2 HSPs)
chr7 (53-137)||(8260879-8260963)
chr7 (89-137)||(33802978-33803025)
[»] chr5 (7 HSPs)
chr5 (53-135)||(43147431-43147513)
chr5 (89-136)||(10399269-10399316)
chr5 (32-69)||(24531050-24531087)
chr5 (80-137)||(41758716-41758773)
chr5 (53-137)||(7662207-7662291)
chr5 (89-137)||(10532827-10532875)
chr5 (53-137)||(12144046-12144130)
[»] scaffold0753 (1 HSPs)
scaffold0753 (53-137)||(3998-4082)
[»] scaffold0217 (1 HSPs)
scaffold0217 (89-137)||(25634-25682)
[»] chr6 (1 HSPs)
chr6 (89-136)||(2419801-2419848)
[»] chr2 (2 HSPs)
chr2 (89-137)||(20149599-20149647)
chr2 (89-137)||(29908537-29908585)


Alignment Details
Target: chr8 (Bit Score: 108; Significance: 2e-54; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 26 - 137
Target Start/End: Complemental strand, 2766977 - 2766866
Alignment:
Q  26 gcccaacatgatttccaaatatacccatgcgtgagtttagtcacaaaccactgaacctctgcacgagttaacgcatgcaagttggccagtggtcaaaact 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  2766977 gcccaacatgatttccaaatatacccatgcgtgagtttagtcacaaaccactgaacctctgcacgagttaacgcacgcaagttggccagtggtcaaaact 2766878  T
Q  126 gaagaacaaacg 137  Q
    ||||||||||||    
T  2766877 gaagaacaaacg 2766866  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 137
Target Start/End: Complemental strand, 5913203 - 5913119
Alignment:
Q  53 tgcgtgagtttagtcacaaaccactgaacctctgcacgagttaacgcatgcaagttggccagtggtcaaaactgaagaacaaacg 137  Q
    ||||||| || ||||||| |||| ||| ||||||  ||||||||| |  ||||||||||| ||||| |||||||||| |||||||    
T  5913203 tgcgtgacttaagtcacacaccattgagcctctgtgcgagttaactcgcgcaagttggccggtggtaaaaactgaagcacaaacg 5913119  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 125
Target Start/End: Original strand, 9039665 - 9039737
Alignment:
Q  53 tgcgtgagtttagtcacaaaccactgaacctctgcacgagttaacgcatgcaagttggccagtggtcaaaact 125  Q
    ||||||| || ||||||| |||||||||||||||| |||||||||    ||||||||||| ||||| ||||||    
T  9039665 tgcgtgacttaagtcacacaccactgaacctctgcgcgagttaacttgcgcaagttggccggtggtaaaaact 9039737  T

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Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 64 - 137
Target Start/End: Complemental strand, 1671402 - 1671329
Alignment:
Q  64 agtcacaaaccactgaacctctgcacgagttaacgcatgcaagttggccagtggtcaaaactgaagaacaaacg 137  Q
    |||||| ||||||||| ||||||| |||||||||||| ||||||||| | ||||||||||||||||||||||||    
T  1671402 agtcacgaaccactgagcctctgcgcgagttaacgcacgcaagttggtcggtggtcaaaactgaagaacaaacg 1671329  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 137
Target Start/End: Original strand, 30858507 - 30858580
Alignment:
Q  64 agtcacaaaccactgaacctctgcacgagttaacgcatgcaagttggccagtggtcaaaactgaagaacaaacg 137  Q
    ||||| |||||| ||| ||||| | ||||||||| |  ||||||||||| ||||||||| ||||||||||||||    
T  30858507 agtcataaaccattgagcctctacgcgagttaactcgcgcaagttggccggtggtcaaagctgaagaacaaacg 30858580  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 51 - 137
Target Start/End: Original strand, 49303206 - 49303292
Alignment:
Q  51 catgcgtgagtttagtcacaaaccactgaacctctgcacgagttaacgcatgcaagttggccagtggtcaaaactgaagaacaaacg 137  Q
    ||||||||| || ||||||| |||||||| ||||||| ||||||||| |  ||||||||||| ||||| |||||||||| |||||||    
T  49303206 catgcgtgacttaagtcacacaccactgagcctctgcgcgagttaactcgcgcaagttggccggtggtaaaaactgaagcacaaacg 49303292  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 129
Target Start/End: Original strand, 47020044 - 47020141
Alignment:
Q  32 catgatttccaaatatacccatgcgtgagtttagtcacaaaccactgaacctctgcacgagttaacgcatgcaagttggccagtggtcaaaactgaag 129  Q
    |||| |||||||||||| || |||||||||| ||||||  |||||||| ||||||| |||||||||    ||||||||| | ||||| ||||||||||    
T  47020044 catgttttccaaatataaccttgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactgaag 47020141  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 137
Target Start/End: Complemental strand, 9242971 - 9242923
Alignment:
Q  89 cgagttaacgcatgcaagttggccagtggtcaaaactgaagaacaaacg 137  Q
    ||||||||| || ||||||||||| || |||| ||||||||||||||||    
T  9242971 cgagttaactcacgcaagttggccggtagtcagaactgaagaacaaacg 9242923  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 38131469 - 38131521
Alignment:
Q  85 tgcacgagttaacgcatgcaagttggccagtggtcaaaactgaagaacaaacg 137  Q
    ||||||||||||| || ||| ||| ||| ||||||| ||||||||||||||||    
T  38131469 tgcacgagttaactcacgcacgttagccggtggtcacaactgaagaacaaacg 38131521  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 137
Target Start/End: Original strand, 42118974 - 42119058
Alignment:
Q  53 tgcgtgagtttagtcacaaaccactgaacctctgcacgagttaacgcatgcaagttggccagtggtcaaaactgaagaacaaacg 137  Q
    ||||||| || ||||||  |||||||| ||||| | |||||||||    ||||||||||| ||||| |||||||||| |||||||    
T  42118974 tgcgtgacttaagtcacgcaccactgagcctctacgcgagttaacttgcgcaagttggccggtggtaaaaactgaagcacaaacg 42119058  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 53 - 137
Target Start/End: Original strand, 8260879 - 8260963
Alignment:
Q  53 tgcgtgagtttagtcacaaaccactgaacctctgcacgagttaacgcatgcaagttggccagtggtcaaaactgaagaacaaacg 137  Q
    ||||||| || ||||||  |||||||| ||| ||| ||||||||| || ||||||||||| ||||||| |||||| |||||||||    
T  8260879 tgcgtgacttaagtcacgcaccactgagcctttgcgcgagttaactcacgcaagttggccggtggtcagaactgatgaacaaacg 8260963  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 137
Target Start/End: Original strand, 33802978 - 33803025
Alignment:
Q  89 cgagttaacgcatgcaagttggccagtggtcaaaactgaagaacaaacg 137  Q
    |||||||||||  |||||||| || ||||||||||||||||||||||||    
T  33802978 cgagttaacgcgcgcaagttg-ccggtggtcaaaactgaagaacaaacg 33803025  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 53 - 135
Target Start/End: Complemental strand, 43147513 - 43147431
Alignment:
Q  53 tgcgtgagtttagtcacaaaccactgaacctctgcacgagttaacgcatgcaagttggccagtggtcaaaactgaagaacaaa 135  Q
    ||||||| || ||||||  |||||||| ||||| ||||||||||| |  ||||||||||| ||||| ||||||||| ||||||    
T  43147513 tgcgtgacttaagtcacgcaccactgagcctctacacgagttaactcgcgcaagttggccggtggtaaaaactgaaaaacaaa 43147431  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 136
Target Start/End: Complemental strand, 10399316 - 10399269
Alignment:
Q  89 cgagttaacgcatgcaagttggccagtggtcaaaactgaagaacaaac 136  Q
    ||||||||| |||||| ||| ||| |||||||||||||||||||||||    
T  10399316 cgagttaactcatgcacgtttgccggtggtcaaaactgaagaacaaac 10399269  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 69
Target Start/End: Complemental strand, 24531087 - 24531050
Alignment:
Q  32 catgatttccaaatatacccatgcgtgagtttagtcac 69  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  24531087 catgatttccaaatatacccctgcgtgagttaagtcac 24531050  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 41758773 - 41758716
Alignment:
Q  80 acctctgcacgagttaacgcatgcaagttggccagtggtcaaaactgaagaacaaacg 137  Q
    |||| ||| ||||||||| |||||| ||||||  ||||||| ||||||||||||||||    
T  41758773 acctatgcgcgagttaactcatgcacgttggctggtggtcagaactgaagaacaaacg 41758716  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 137
Target Start/End: Complemental strand, 7662291 - 7662207
Alignment:
Q  53 tgcgtgagtttagtcacaaaccactgaacctctgcacgagttaacgcatgcaagttggccagtggtcaaaactgaagaacaaacg 137  Q
    |||||||||| ||||||  |||||||| ||| ||| ||| |||||    ||||||||||| ||||| |||||||||| |||||||    
T  7662291 tgcgtgagttaagtcacgcaccactgagcctatgcgcgatttaacttgcgcaagttggccggtggtaaaaactgaagcacaaacg 7662207  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 137
Target Start/End: Original strand, 10532827 - 10532875
Alignment:
Q  89 cgagttaacgcatgcaagttggccagtggtcaaaactgaagaacaaacg 137  Q
    ||||||||| || ||||||||||| ||||||| | ||||||||||||||    
T  10532827 cgagttaactcacgcaagttggccggtggtcagagctgaagaacaaacg 10532875  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 137
Target Start/End: Original strand, 12144046 - 12144130
Alignment:
Q  53 tgcgtgagtttagtcacaaaccactgaacctctgcacgagttaacgcatgcaagttggccagtggtcaaaactgaagaacaaacg 137  Q
    ||||||| || ||||||  |||||||| ||| |||||||||||||    ||||||||| ||||| | |||||||||| |||||||    
T  12144046 tgcgtgacttaagtcacgcaccactgagcctatgcacgagttaacttgcgcaagttggtcagtgttaaaaactgaagcacaaacg 12144130  T

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Target: scaffold0753 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0753
Description:

Target: scaffold0753; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 137
Target Start/End: Original strand, 3998 - 4082
Alignment:
Q  53 tgcgtgagtttagtcacaaaccactgaacctctgcacgagttaacgcatgcaagttggccagtggtcaaaactgaagaacaaacg 137  Q
    ||||||| || ||||||  |||||||| ||| | | ||||||||| || |||||||| || ||||||| ||||||||||||||||    
T  3998 tgcgtgacttaagtcacgcaccactgagcctttccgcgagttaactcacgcaagttgaccggtggtcagaactgaagaacaaacg 4082  T

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Target: scaffold0217 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 137
Target Start/End: Original strand, 25634 - 25682
Alignment:
Q  89 cgagttaacgcatgcaagttggccagtggtcaaaactgaagaacaaacg 137  Q
    ||||||||| || ||||||||||| ||||||| ||||||||||||||||    
T  25634 cgagttaactcacgcaagttggccggtggtcagaactgaagaacaaacg 25682  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 136
Target Start/End: Complemental strand, 2419848 - 2419801
Alignment:
Q  89 cgagttaacgcatgcaagttggccagtggtcaaaactgaagaacaaac 136  Q
    ||||||||| || ||||||||||| ||||||| |||||||||||||||    
T  2419848 cgagttaactcacgcaagttggccggtggtcagaactgaagaacaaac 2419801  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 137
Target Start/End: Complemental strand, 20149647 - 20149599
Alignment:
Q  89 cgagttaacgcatgcaagttggccagtggtcaaaactgaagaacaaacg 137  Q
    ||||||||| || ||| |||||||| |||||| ||||||||||||||||    
T  20149647 cgagttaactcacgcacgttggccaatggtcataactgaagaacaaacg 20149599  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 137
Target Start/End: Original strand, 29908537 - 29908585
Alignment:
Q  89 cgagttaacgcatgcaagttggccagtggtcaaaactgaagaacaaacg 137  Q
    ||||||||| |||||| ||||||| ||||| | ||||||||||||||||    
T  29908537 cgagttaactcatgcacgttggccggtggttagaactgaagaacaaacg 29908585  T

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