View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7748_low_11 (Length: 236)
Name: NF7748_low_11
Description: NF7748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7748_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 9 - 214
Target Start/End: Complemental strand, 53032889 - 53032672
Alignment:
| Q |
9 |
atcatagacaacttgtgagatacgacccatcaatcctatgcttcctcctccatataccaagtcaatgtttctttccacctacaccatacacacac----- |
103 |
Q |
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| T |
53032889 |
atcatagacaacttgtgagatacgacccatcaatcctatgcttcctcctccatataccaagtcaatgtttctttccacctacaccatacacatacacata |
53032790 |
T |
|
| Q |
104 |
-------ttttattatttttctctaatcaattatatattctaaatgtcaaacttaacttaagccttttaattaatcactcatattgaataatggtatgta |
196 |
Q |
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| T |
53032789 |
cacacgcttttattatttttctctaatcaattatatattctaaatgtcaaacttaacttaagccttttaattaatcactcatattgaataatggtatgta |
53032690 |
T |
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| Q |
197 |
ttatattattgcagccaa |
214 |
Q |
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| T |
53032689 |
ttatattattgcagccaa |
53032672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 7884326 - 7884254
Alignment:
| Q |
16 |
acaacttgtgagatacgacccatcaatcctatgcttcctcctccatataccaagtcaatgtttctttccacct |
88 |
Q |
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||||||||||| || ||||||||| || ||||||||||||||||||||||||||||| || || ||||||| |
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| T |
7884326 |
acaacttgtgatattaaacccatcaaaccaatgcttcctcctccatataccaagtcaatattcctctccacct |
7884254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 7900009 - 7899937
Alignment:
| Q |
16 |
acaacttgtgagatacgacccatcaatcctatgcttcctcctccatataccaagtcaatgtttctttccacct |
88 |
Q |
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||||||||||| || ||||||||| || ||| ||||||||||||||||||||||||| || || ||||||| |
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| T |
7900009 |
acaacttgtgatattaaacccatcaaaccaatgtttcctcctccatataccaagtcaatattcctctccacct |
7899937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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